mRNA_P-wetherbeei_contig14929.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14929.2.1
Unique NamemRNA_P-wetherbeei_contig14929.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14929.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14929contigP-wetherbeei_contig14929:272..767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog5888.CAK82724
PFAMsMORN
Model size255
Max annot lvl5878|Ciliophora
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.69e-05
EggNOG OGsCOG5253@1|root,KOG0229@2759|Eukaryota,3ZD2I@5878|Ciliophora
DescriptionPossible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases.
Cds size234
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.7007809-UTR-P-wetherbeei_contig14929:271..2921683186037.7007809-UTR-P-wetherbeei_contig14929:271..292Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14929 272..292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.7146542-CDS-P-wetherbeei_contig14929:292..4031683186037.7146542-CDS-P-wetherbeei_contig14929:292..403Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14929 293..403 +
1683186037.7264519-CDS-P-wetherbeei_contig14929:644..7671683186037.7264519-CDS-P-wetherbeei_contig14929:644..767Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14929 645..767 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14929.2.1prot_P-wetherbeei_contig14929.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14929 293..767 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14929.2.1

>prot_P-wetherbeei_contig14929.2.1 ID=prot_P-wetherbeei_contig14929.2.1|Name=mRNA_P-wetherbeei_contig14929.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=78bp
MYVGPFVDGKREGTGAITEAGGTVYEGGWRGDNKHGQGYARFPDGAEFVG
QFQYGMMHGRGRWTYPDGAVYEGKFIF*
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mRNA from alignment at P-wetherbeei_contig14929:272..767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14929.2.1 ID=mRNA_P-wetherbeei_contig14929.2.1|Name=mRNA_P-wetherbeei_contig14929.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=496bp|location=Sequence derived from alignment at P-wetherbeei_contig14929:272..767+ (Phaeothamnion wetherbeei SAG_119_79)
TACTCTGCCAGTAACGGCGACATGTACGTGGGACCTTTCGTGGACGGGAA
GCGGGAGGGCACCGGAGCCATCACAGAAGCCGGCGGCACTGTGTACGAAG
GTGGCTGGAGGGGCGACAACAAGCACGGCCAGGTACTTTTTATGTGCATA
CACATACAAAGAGTTGAGCTATCGTTACCGGCGGCATTTCCGTCTTGCGC
ATGCGTGCCCTTTTTTTGGAAAGTCATTCTAGTGGGTTCATGCCTTCGGA
GGAGAGTATGCATAAGCAGTGCCTTTCCCTTTCAGAAATGGTCAGCCACG
TTTGGTCTAAACCTCCCGGAGCACGTGCCTTCACCGCTACCCGCACAAAC
CGGTTTCGGGATATGCTCCACAGGGGTATGCGAGATTTCCTGACGGCGCC
GAGTTTGTCGGCCAGTTCCAGTATGGGATGATGCACGGTCGCGGGCGCTG
GACGTACCCGGACGGAGCCGTATACGAAGGCAAGTTCATATTTTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14929:272..767+

>mRNA_P-wetherbeei_contig14929.2.1 ID=mRNA_P-wetherbeei_contig14929.2.1|Name=mRNA_P-wetherbeei_contig14929.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=234bp|location=Sequence derived from alignment at P-wetherbeei_contig14929:272..767+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGTGGGACCTTTCGTGGACGGGAAGCGGGAGGGCACCGGAGCCAT
CACAGAAGCCGGCGGCACTGTGTACGAAGGTGGCTGGAGGGGCGACAACA
AGCACGGCCAGGGGTATGCGAGATTTCCTGACGGCGCCGAGTTTGTCGGC
CAGTTCCAGTATGGGATGATGCACGGTCGCGGGCGCTGGACGTACCCGGA
CGGAGCCGTATACGAAGGCAAGTTCATATTTTAA
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