mRNA_P-wetherbeei_contig14928.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14928.1.1
Unique NamemRNA_P-wetherbeei_contig14928.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A3C0TVP3_9PROT (Pseudouridine synthase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TVP3_9PROT)

HSP 1 Score: 381 bits (978), Expect = 3.300e-130
Identity = 190/269 (70.63%), Postives = 222/269 (82.53%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRS-RAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNAL 804
            SYRVK G+ F+I IP  VDA   PE IPLN++YED +LIVIDKPAGLVVHP AGNW+GTLVHALL+HCG SLSGIGGV+RPGIVHRLDK TSGLLVAAKT RAH  LA QFA H+V RSYLA VWGAP PA+GR+V+QIGRSPSNRQKMAVRP+GG++AITNYE LQ FG+  +P +SLVRCRLETGRTHQIRVH+AH G+P++GDPVYGG  + R K LP +  + I GLGRQALHA  LGFIHP+++E   + S LPE+++ LL  L
Sbjct:   59 SYRVKSGERFHICIPAPVDAVIRPENIPLNIIYEDEDLIVIDKPAGLVVHPGAGNWQGTLVHALLAHCGASLSGIGGVKRPGIVHRLDKLTSGLLVAAKTGRAHEILAAQFAEHSVTRSYLALVWGAPKPAKGRLVSQIGRSPSNRQKMAVRPNGGKQAITNYETLQSFGNPLRPAVSLVRCRLETGRTHQIRVHLAHQGNPVIGDPVYGGNPAGREKLLPHELRKVIGGLGRQALHAAILGFIHPVRNEEMYFESPLPEEISRLLPLL 327          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A2H6J111_9BACT (Pseudouridine synthase n=1 Tax=bacterium BMS3Bbin10 TaxID=2005733 RepID=A0A2H6J111_9BACT)

HSP 1 Score: 341 bits (875), Expect = 1.840e-114
Identity = 171/276 (61.96%), Postives = 211/276 (76.45%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAH----TVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGG-RSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALERM 813
            ++RVKPG+T+ IT+PP   A P+ E IPL+VVYED  LIVIDKPAGLVVHPAAGNW GTLVHAL+ HCG SLSG+GGV+RPGIVHR+DK+TSGL+V AK+D AH ALA QFA H     ++RSY A VWG PHP +G I   +GR P  RQKM V   GG++A+T+YEVL+ FG A++PV S VRCRLETGRTHQIRVHMAHIG+P++GDP+YG G R++A+ LPD    A+  L RQALHAT LGF HP   +   + S LPED++ +L +L  +
Sbjct:   62 NFRVKPGETYCITVPPAQPAIPKGENIPLDVVYEDDWLIVIDKPAGLVVHPAAGNWSGTLVHALIHHCGGSLSGVGGVKRPGIVHRIDKETSGLMVVAKSDAAHRALAEQFADHGRTGPLERSYEALVWGIPHPPKGTIDAALGRKPQQRQKMGVLAAGGKQAVTHYEVLETFGPAKEPVASRVRCRLETGRTHQIRVHMAHIGNPLIGDPLYGTGFRTKARILPDGPREAVEKLLRQALHATLLGFAHPKDKQAMRFESALPEDISRVLKSLSEV 337          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A352K9U0_9PROT (Pseudouridine synthase n=6 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352K9U0_9PROT)

HSP 1 Score: 330 bits (845), Expect = 5.750e-110
Identity = 168/271 (61.99%), Postives = 196/271 (72.32%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALERM 813
            SYRVKP ++F + IP  V+A P+P+ I L++ YED+ LIVIDKPAGLVVHP AGN  GTLV+ALL HCGDSLSGIGG++RPGIVHRLDK TSGLLV AKTD AH ALA QF  H+V+R Y A VWGAP  A+ RI TQ+GRS  NRQKM V    G+ AITNY     +G    P+ + V CRLETGRTHQIRVHMAHIGHPI+GDPVYG  R + K LPD     I  LGRQALHA  LGFIHP       + S LP D+  L+N+ E++
Sbjct:   63 SYRVKPAESFCVDIPAPVEATPQPQQIALDIRYEDAALIVIDKPAGLVVHPGAGNSEGTLVNALLHHCGDSLSGIGGIKRPGIVHRLDKDTSGLLVVAKTDLAHQALAAQFEEHSVERRYQALVWGAPQHAEDRIETQLGRSRYNRQKMTVLRQNGKHAITNYRCTDYYGPPASPLATRVACRLETGRTHQIRVHMAHIGHPIIGDPVYGQARIKRKQLPDALNALIDRLGRQALHAAVLGFIHPESGRKLRFESALPHDLHELVNSFEQL 333          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A5J4E1W9_9BACT (Pseudouridine synthase n=1 Tax=bacterium MnTg02 TaxID=2080452 RepID=A0A5J4E1W9_9BACT)

HSP 1 Score: 329 bits (843), Expect = 1.780e-109
Identity = 168/274 (61.31%), Postives = 204/274 (74.45%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHT----VQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGG-RSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALE 807
            +YRVKPG+ F + +P    A P PEAIPLNVV+ED  +I+IDKPAGLVVHPAAG+W GTLV+AL++HCGDSLSGIGGVRRPGIVHRLDK+TSGL+V AKTD AH  LA QFA+H     ++RSY A VWG P  ++GRI T IGR  SNR KMA    GG+ ++T+YE+ +R  +   P+ SLV+C LETGRTHQIRVHMAHIGHP++GD  YG G  + A+ L  +A  A+  LGRQALHA  LGFIHPL  E   + S LPED A L+ AL+
Sbjct:   73 NYRVKPGECFLVDVPEPEPAIPRPEAIPLNVVFEDDSVIIIDKPAGLVVHPAAGHWTGTLVNALIAHCGDSLSGIGGVRRPGIVHRLDKETSGLMVVAKTDAAHQGLAAQFASHGRDGHLERSYAALVWGVPARSKGRIETGIGRKISNRLKMAAVIKGGKPSVTHYEIARRLPNGDAPLASLVKCTLETGRTHQIRVHMAHIGHPVLGDMTYGAGFAASARKLAPEARAALDTLGRQALHAQFLGFIHPLSGEKLRFESTLPEDFAALVEALK 346          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: UPI001105D6C0 (RluA family pseudouridine synthase n=1 Tax=Luteithermobacter gelatinilyticus TaxID=2582913 RepID=UPI001105D6C0)

HSP 1 Score: 327 bits (839), Expect = 8.480e-109
Identity = 165/289 (57.09%), Postives = 202/289 (69.90%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPV--------------------ISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALE 807
            SYRVKPG+TF + IP LV+  PE E IPL++VYED  L+VIDKPAG+VVHPA G+W GTLV+AL++HCGDSLSGI GV+RPGIVHR+DK TSGL+V AKTD+AH  LA QFA H+++R+YLA VWG P+PA G I   IGR P NR KMAV   GG+EA+TNY VL+R    + P                     +SLV CRLETGRTHQ+RVHMA  GHP++GDP+YG      K   + A  AI+G  RQALHA  +GF+HP+  E+  + S LP DM  L+ ALE
Sbjct:   62 SYRVKPGETFELKIPDLVEPEPEGENIPLDIVYEDDHLLVIDKPAGMVVHPAPGSWHGTLVNALIAHCGDSLSGINGVKRPGIVHRIDKDTSGLIVVAKTDKAHKKLAKQFANHSLERAYLAVVWGVPNPADGFIEANIGRDPRNRLKMAVVTEGGKEALTNYRVLRRLEPPRTPTRSGGAYSSGKKVKALRLPPSVSLVECRLETGRTHQVRVHMAAAGHPLIGDPLYGRRNPPLKNFSEQAREAISGFHRQALHAHVIGFVHPVTGEVLKFESDLPNDMRRLITALE 350          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A3A0EPD9_9PROT (Pseudouridine synthase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A3A0EPD9_9PROT)

HSP 1 Score: 322 bits (824), Expect = 7.470e-107
Identity = 160/270 (59.26%), Postives = 195/270 (72.22%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALER 810
            ++++K G+   + +P  V A P  EA+PL+VVYED +LI+I+KPAGLVVHP AGN   TLV+AL+ HCG SLSGIGGVRRPGIVHR+DK+TSGLLVAAK D AH  LA QFAAH ++R+YLA VWGAP P  GRI   IGR P  RQKM VR  GG+ AIT+Y  L+RF  A K   +LV CRL+TGRTHQIRVHM H+GHP++GD VYG      +GLP+   R +A   RQALHA SLGF HP   +   +++ LP DM  LLN LE+
Sbjct:   57 AHKLKGGEAVEVVVPAAVAATPRAEALPLDVVYEDDDLIIINKPAGLVVHPGAGNAEHTLVNALIHHCGASLSGIGGVRRPGIVHRIDKETSGLLVAAKNDLAHHGLAAQFAAHDLERAYLAIVWGAPTPPAGRIAGNIGRHPIQRQKMTVRATGGKTAITHYRTLKRFDCAGKAAAALVECRLQTGRTHQIRVHMTHVGHPLIGDAVYGRATRHGRGLPEGLKRLLAAFPRQALHAASLGFRHPRTSKALKFSAELPHDMTALLNELEK 326          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A1N7IJ99_9PROT (Pseudouridine synthase n=2 Tax=Insolitispirillum peregrinum TaxID=80876 RepID=A0A1N7IJ99_9PROT)

HSP 1 Score: 322 bits (824), Expect = 4.630e-106
Identity = 163/267 (61.05%), Postives = 190/267 (71.16%), Query Frame = 1
Query:    4 YRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNAL 804
            + VKPG    + +P    A PEP+ IPL VVYED  LIVIDKPAG+VVHPAAG+  GT+V+ALL HCG SLSGIGGVRRPGIVHR+DK TSGLLV AKTD+AH  LA QFAAHT++R+Y A VWG P P QG I   IGRSP NRQKMA+   GG+ A+T Y  +  + D      SLV CRL TGRTHQIRVHM H+GHP++GDPVYG    R KGL D+A   ++G  RQALHA  LGFIHP   E   + S LP DMA L+ +L
Sbjct:  113 HAVKPGQRITVCLPAAAPADPEPQDIPLTVVYEDQHLIVIDKPAGMVVHPAAGSPDGTVVNALLHHCGSSLSGIGGVRRPGIVHRIDKDTSGLLVVAKTDQAHHGLAEQFAAHTLERAYWAVVWGRPSPVQGEITGAIGRSPHNRQKMAIVQRGGKHALTRYRTIASYLDG---AASLVECRLATGRTHQIRVHMTHLGHPLIGDPVYGQQNKRRKGLTDEAAACVSGFSRQALHAWLLGFIHPATGEAVRFTSALPNDMADLVRSL 376          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A6A7Y0W5_9HYPH (RluA family pseudouridine synthase n=2 Tax=Segnochrobactrum spirostomi TaxID=2608987 RepID=A0A6A7Y0W5_9HYPH)

HSP 1 Score: 322 bits (824), Expect = 1.280e-105
Identity = 166/272 (61.03%), Postives = 197/272 (72.43%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAH----TVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGG-RSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNA 801
            S ++  G    + +PP   A PEPEAIPL+VVYED  LIVIDKPAGLVVHPAAG+ RGTLV+ALL HCGD LSGIGGVRRPGIVHRLDK TSGLLV AKTDRAH  LA QFA H     ++R+Y+A VWGAP    G I   + RS +NRQ+ AV   GG+EA+T+Y VL+RFG   +P+ SL+ CRLETGRTHQIRVHMAHIGHP+VGD  YG G R++   LP+ A    A  GRQALHA  L F HP+  E+  + S LP+D+A L+ A
Sbjct:  140 SRKIGAGARIAVELPPPEPATPEPEAIPLDVVYEDEALIVIDKPAGLVVHPAAGHARGTLVNALLHHCGDDLSGIGGVRRPGIVHRLDKDTSGLLVVAKTDRAHRGLAAQFADHGRTGALERAYIALVWGAPRAGGGTIDAPLARSTANRQRRAVARSGGKEAVTHYTVLERFGSGDEPIASLIECRLETGRTHQIRVHMAHIGHPLVGDEEYGAGFRTKVNRLPEPAHSLAAAFGRQALHAAVLAFEHPVTGEILEFESDLPDDLAALVEA 411          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A6J4FS23_9PROT (Pseudouridine synthase n=2 Tax=Magnetospirillum sp. SS-4 TaxID=2681465 RepID=A0A6J4FS23_9PROT)

HSP 1 Score: 318 bits (816), Expect = 2.680e-105
Identity = 164/270 (60.74%), Postives = 201/270 (74.44%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGGRS-RAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNALE 807
            S+RVKPG T+ + +PP + A PEP+AI L VVYED +LIVIDKPAG+VVHPA GN   TLV+ALL+HCG+SL+GIGGVRRPGIVHR+DK TSGL+VAAKTD AH +L+ QFAAHT++R+Y A VWG P P +G I   IGR+P +R+KMAV  HGG+ A+T YEVL+ F +     +SLV CRL TGRTHQIRVHM  +GHP+VGDP YG  RS R  GL  +A RA+A   RQALHA  LGF+HP K  +  + S  P D+  L+  LE
Sbjct:   84 SHRVKPGQTYSLGVPPDIPAEPEPQAIALTVVYEDDDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGIGGVRRPGIVHRIDKDTSGLMVAAKTDVAHRSLSAQFAAHTLERAYRALVWGLPSPGKGEIEGNIGRNPRDRKKMAVVGHGGKPALTRYEVLKSFANG---AVSLVECRLATGRTHQIRVHMTSLGHPLVGDPSYGRNRSNRLGGLSAEARRALAEFPRQALHAYLLGFLHPTKGYVLRFESSTPPDINALIEKLE 350          
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Match: A0A7S8C5Y9_9HYPH (Pseudouridine synthase n=1 Tax=Kaustia mangrovi TaxID=2593653 RepID=A0A7S8C5Y9_9HYPH)

HSP 1 Score: 318 bits (814), Expect = 3.300e-105
Identity = 168/274 (61.31%), Postives = 197/274 (71.90%), Query Frame = 1
Query:    1 SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVHPAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKTDRAHAALAGQFAAH----TVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMAVRPHGGREAITNYEVLQRFGDAQ-KPVISLVRCRLETGRTHQIRVHMAHIGHPIVGDPVYGGG-RSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDELFSYNSLLPEDMAMLLNAL 804
            SYRVKPG+   +++PP V A PE E I L +V+ED  LIVIDKPAGLVVHP AGNW GTLV+AL++HCGDSLSGIGGVRRPGIVHRLDK TSGL+V AKTD AHA L+ QFAAH     ++R+Y A VWGAP    G +   I R  +NRQKMAV   GGR A T Y V + F  +  K   SLV+C LETGRTHQIRVHMAHIGHP++GD +YG G  + A+ LPD A +A+  LGRQALHA  LGF HP   E   + S LPED+  L+NAL
Sbjct:   58 SYRVKPGERLAVSVPPPVPAEPEGEDIALAIVHEDEHLIVIDKPAGLVVHPGAGNWTGTLVNALIAHCGDSLSGIGGVRRPGIVHRLDKDTSGLMVVAKTDAAHAGLSEQFAAHGRDGRLERAYAALVWGAPKRMTGTVEGNIARKETNRQKMAVTATGGRHATTRYRVAEHFPPSGGKTAASLVQCHLETGRTHQIRVHMAHIGHPLLGDMIYGAGFAASARTLPDGARKALEELGRQALHAELLGFEHPATGERLRFESALPEDLHHLVNAL 331          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14928.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TVP3_9PROT3.300e-13070.63Pseudouridine synthase n=1 Tax=Alphaproteobacteria... [more]
A0A2H6J111_9BACT1.840e-11461.96Pseudouridine synthase n=1 Tax=bacterium BMS3Bbin1... [more]
A0A352K9U0_9PROT5.750e-11061.99Pseudouridine synthase n=6 Tax=Alphaproteobacteria... [more]
A0A5J4E1W9_9BACT1.780e-10961.31Pseudouridine synthase n=1 Tax=bacterium MnTg02 Ta... [more]
UPI001105D6C08.480e-10957.09RluA family pseudouridine synthase n=1 Tax=Luteith... [more]
A0A3A0EPD9_9PROT7.470e-10759.26Pseudouridine synthase n=1 Tax=Proteobacteria bact... [more]
A0A1N7IJ99_9PROT4.630e-10661.05Pseudouridine synthase n=2 Tax=Insolitispirillum p... [more]
A0A6A7Y0W5_9HYPH1.280e-10561.03RluA family pseudouridine synthase n=2 Tax=Segnoch... [more]
A0A6J4FS23_9PROT2.680e-10560.74Pseudouridine synthase n=2 Tax=Magnetospirillum sp... [more]
A0A7S8C5Y9_9HYPH3.300e-10561.31Pseudouridine synthase n=1 Tax=Kaustia mangrovi Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14928contigP-wetherbeei_contig14928:801..1622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1207063.P24_13498
Preferred namerluD
PFAMsPseudoU_synth_2,S4
Model size822
Max annot lvl204441|Rhodospirillales
KEGG koko:K06180
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.27e-102
EggNOG OGsCOG0564@1|root,COG0564@2|Bacteria,1MUBN@1224|Proteobacteria,2TSBK@28211|Alphaproteobacteria,2JQ4Y@204441|Rhodospirillales
EC5.4.99.23
DescriptionResponsible for synthesis of pseudouridine from uracil
Cds size822
COG categoryJ
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.664076-CDS-P-wetherbeei_contig14928:800..16221683186037.664076-CDS-P-wetherbeei_contig14928:800..1622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14928 801..1622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14928.1.1prot_P-wetherbeei_contig14928.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14928 801..1622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14928.1.1

>prot_P-wetherbeei_contig14928.1.1 ID=prot_P-wetherbeei_contig14928.1.1|Name=mRNA_P-wetherbeei_contig14928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=274bp
SYRVKPGDTFYITIPPLVDAAPEPEAIPLNVVYEDSELIVIDKPAGLVVH
PAAGNWRGTLVHALLSHCGDSLSGIGGVRRPGIVHRLDKQTSGLLVAAKT
DRAHAALAGQFAAHTVQRSYLAFVWGAPHPAQGRIVTQIGRSPSNRQKMA
VRPHGGREAITNYEVLQRFGDAQKPVISLVRCRLETGRTHQIRVHMAHIG
HPIVGDPVYGGGRSRAKGLPDDALRAIAGLGRQALHATSLGFIHPLKDEL
FSYNSLLPEDMAMLLNALERMSN*
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mRNA from alignment at P-wetherbeei_contig14928:801..1622-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14928.1.1 ID=mRNA_P-wetherbeei_contig14928.1.1|Name=mRNA_P-wetherbeei_contig14928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig14928:801..1622- (Phaeothamnion wetherbeei SAG_119_79)
TCCTACAGGGTCAAACCCGGCGATACATTTTATATCACCATACCTCCTTT GGTCGATGCCGCACCTGAGCCCGAAGCCATTCCGCTTAATGTGGTTTACG AAGATAGTGAGCTGATCGTCATAGATAAGCCCGCAGGGCTGGTCGTGCAT CCCGCCGCGGGCAACTGGCGGGGTACACTGGTGCATGCCCTGCTGTCACA TTGCGGCGATAGTCTTTCCGGCATTGGCGGGGTACGCCGCCCCGGCATTG TGCACCGGCTGGACAAGCAGACCAGCGGCCTGCTGGTGGCCGCCAAAACC GACCGCGCCCATGCAGCACTTGCCGGACAATTCGCCGCTCATACGGTGCA GCGCAGTTATCTGGCGTTTGTCTGGGGGGCCCCACACCCGGCCCAGGGCC GAATTGTCACCCAGATCGGCCGCAGCCCTTCAAACCGGCAGAAAATGGCT GTGCGTCCGCATGGCGGCCGCGAGGCGATTACCAATTATGAGGTTTTGCA GCGTTTTGGTGATGCGCAAAAACCCGTCATCAGCCTCGTGCGCTGCCGTC TGGAAACCGGTCGCACCCACCAGATCCGGGTGCATATGGCGCATATTGGC CATCCCATCGTCGGCGATCCGGTCTATGGCGGCGGACGCAGCAGGGCCAA GGGGCTGCCGGATGACGCCTTGCGGGCGATAGCCGGACTGGGCCGGCAGG CCCTGCACGCCACAAGCCTGGGCTTTATTCATCCCCTCAAAGACGAACTT TTCAGCTATAATAGTTTGTTGCCGGAGGATATGGCGATGCTGCTTAACGC CTTGGAACGGATGTCAAATTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14928:801..1622-

>mRNA_P-wetherbeei_contig14928.1.1 ID=mRNA_P-wetherbeei_contig14928.1.1|Name=mRNA_P-wetherbeei_contig14928.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=822bp|location=Sequence derived from alignment at P-wetherbeei_contig14928:801..1622- (Phaeothamnion wetherbeei SAG_119_79)
TCCTACAGGGTCAAACCCGGCGATACATTTTATATCACCATACCTCCTTT
GGTCGATGCCGCACCTGAGCCCGAAGCCATTCCGCTTAATGTGGTTTACG
AAGATAGTGAGCTGATCGTCATAGATAAGCCCGCAGGGCTGGTCGTGCAT
CCCGCCGCGGGCAACTGGCGGGGTACACTGGTGCATGCCCTGCTGTCACA
TTGCGGCGATAGTCTTTCCGGCATTGGCGGGGTACGCCGCCCCGGCATTG
TGCACCGGCTGGACAAGCAGACCAGCGGCCTGCTGGTGGCCGCCAAAACC
GACCGCGCCCATGCAGCACTTGCCGGACAATTCGCCGCTCATACGGTGCA
GCGCAGTTATCTGGCGTTTGTCTGGGGGGCCCCACACCCGGCCCAGGGCC
GAATTGTCACCCAGATCGGCCGCAGCCCTTCAAACCGGCAGAAAATGGCT
GTGCGTCCGCATGGCGGCCGCGAGGCGATTACCAATTATGAGGTTTTGCA
GCGTTTTGGTGATGCGCAAAAACCCGTCATCAGCCTCGTGCGCTGCCGTC
TGGAAACCGGTCGCACCCACCAGATCCGGGTGCATATGGCGCATATTGGC
CATCCCATCGTCGGCGATCCGGTCTATGGCGGCGGACGCAGCAGGGCCAA
GGGGCTGCCGGATGACGCCTTGCGGGCGATAGCCGGACTGGGCCGGCAGG
CCCTGCACGCCACAAGCCTGGGCTTTATTCATCCCCTCAAAGACGAACTT
TTCAGCTATAATAGTTTGTTGCCGGAGGATATGGCGATGCTGCTTAACGC
CTTGGAACGGATGTCAAATTAA
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