mRNA_P-wetherbeei_contig1490.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1490.4.1
Unique NamemRNA_P-wetherbeei_contig1490.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1490.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1490contigP-wetherbeei_contig1490:4195..5029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size835
Hectar predicted targeting categorysignal peptide
Exons1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.1035416-UTR-P-wetherbeei_contig1490:4194..42791683186037.1035416-UTR-P-wetherbeei_contig1490:4194..4279Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1490 4195..4279 -
1683186037.1250558-UTR-P-wetherbeei_contig1490:4987..50291683186037.1250558-UTR-P-wetherbeei_contig1490:4987..5029Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1490 4988..5029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186037.114409-CDS-P-wetherbeei_contig1490:4279..49871683186037.114409-CDS-P-wetherbeei_contig1490:4279..4987Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1490 4280..4987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1490.4.1prot_P-wetherbeei_contig1490.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1490 4280..4987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1490.4.1

>prot_P-wetherbeei_contig1490.4.1 ID=prot_P-wetherbeei_contig1490.4.1|Name=mRNA_P-wetherbeei_contig1490.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MRSLFMLWCALAAVLCPEGLALVLRTSRLKTGASSGAQRIVAKTGATLRG
AKRTSFRRRRSPMQANLGMPHQLLSLGDLPARLDFGAGLIFVAVLGSTIF
LRDRMSSAVEARKDRESFETRLREIRSSNLSGTGATSDDLDLAQQRLEVL
KKAEEDARAVKLLNFDTPFTVRLPDLSAPPPRGDEAAPPEEDAPMVLTFK
LVILCLIVVSQLWLLLLFASDPMAPGGMALPFLHD*
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mRNA from alignment at P-wetherbeei_contig1490:4195..5029-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1490.4.1 ID=mRNA_P-wetherbeei_contig1490.4.1|Name=mRNA_P-wetherbeei_contig1490.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=835bp|location=Sequence derived from alignment at P-wetherbeei_contig1490:4195..5029- (Phaeothamnion wetherbeei SAG_119_79)
AAAGCGGGCAAGCAAAAATTACCGGAACCCAAAAAGATTATAATGAGATC
CCTCTTTATGCTGTGGTGTGCCCTCGCCGCCGTGCTATGCCCGGAAGGCT
TGGCTCTGGTTCTCCGCACCTCGAGACTGAAGACCGGTGCATCGTCAGGT
GCACAGCGCATTGTTGCAAAGACAGGCGCAACGTTAAGAGGCGCTAAGCG
CACCTCTTTCCGAAGACGGCGCTCACCCATGCAAGCAAATTTGGGAATGC
CTCACCAGTTGCTTTCTTTGGGCGACCTTCCCGCGCGACTTGACTTTGGC
GCTGGGCTGATTTTTGTCGCCGTGCTCGGGAGCACCATCTTCTTGCGAGA
CCGCATGAGCAGCGCGGTGGAGGCTCGGAAGGACAGGGAATCGTTCGAGA
CGCGGCTGCGAGAGATCCGCAGCTCCAATCTCTCTGGAACGGGCGCGACG
TCTGACGATTTGGACCTCGCTCAGCAGCGGCTCGAGGTACTGAAGAAGGC
GGAGGAGGACGCCCGCGCCGTCAAGCTGCTCAACTTCGACACCCCCTTCA
CCGTGCGGCTGCCGGACCTGTCGGCGCCACCGCCGCGCGGCGACGAGGCC
GCGCCACCGGAGGAGGATGCCCCGATGGTGCTAACGTTCAAGCTGGTGAT
TTTGTGCCTGATTGTCGTCAGCCAGTTATGGTTGCTTCTCCTCTTTGCGT
CGGACCCCATGGCGCCCGGCGGCATGGCTCTTCCGTTCCTGCATGACTGA
TGGGTATGTGTCTTGTGGGGCTTCTTCGACCTTCTTGTTTGCTTTATCGA
TAGTTTCCATGTAATAGATATACCGGTATATACCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1490:4195..5029-

>mRNA_P-wetherbeei_contig1490.4.1 ID=mRNA_P-wetherbeei_contig1490.4.1|Name=mRNA_P-wetherbeei_contig1490.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig1490:4195..5029- (Phaeothamnion wetherbeei SAG_119_79)
ATGAGATCCCTCTTTATGCTGTGGTGTGCCCTCGCCGCCGTGCTATGCCC
GGAAGGCTTGGCTCTGGTTCTCCGCACCTCGAGACTGAAGACCGGTGCAT
CGTCAGGTGCACAGCGCATTGTTGCAAAGACAGGCGCAACGTTAAGAGGC
GCTAAGCGCACCTCTTTCCGAAGACGGCGCTCACCCATGCAAGCAAATTT
GGGAATGCCTCACCAGTTGCTTTCTTTGGGCGACCTTCCCGCGCGACTTG
ACTTTGGCGCTGGGCTGATTTTTGTCGCCGTGCTCGGGAGCACCATCTTC
TTGCGAGACCGCATGAGCAGCGCGGTGGAGGCTCGGAAGGACAGGGAATC
GTTCGAGACGCGGCTGCGAGAGATCCGCAGCTCCAATCTCTCTGGAACGG
GCGCGACGTCTGACGATTTGGACCTCGCTCAGCAGCGGCTCGAGGTACTG
AAGAAGGCGGAGGAGGACGCCCGCGCCGTCAAGCTGCTCAACTTCGACAC
CCCCTTCACCGTGCGGCTGCCGGACCTGTCGGCGCCACCGCCGCGCGGCG
ACGAGGCCGCGCCACCGGAGGAGGATGCCCCGATGGTGCTAACGTTCAAG
CTGGTGATTTTGTGCCTGATTGTCGTCAGCCAGTTATGGTTGCTTCTCCT
CTTTGCGTCGGACCCCATGGCGCCCGGCGGCATGGCTCTTCCGTTCCTGC
ATGACTGA
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