mRNA_P-wetherbeei_contig149.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig149.1.1
Unique NamemRNA_P-wetherbeei_contig149.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 4.960e-12
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFLH 183
            L +WK     +P+L++VARVV+  P SAA +ERDFS+AG ++++ R  + S YV+MI+FLH
Sbjct:  608 LKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLH 668
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-10
Identity = 30/52 (57.69%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   31 FPILSQVARVVYAHPTSAAAIERDFSDAGNLI-SNRRGRLGSTYVDMILFLH 183
            +P+L++VARVV+  P SAA +ERDFS+AG ++ S+RR    +TYV+MILFLH
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLH 57
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A818DF51_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A818DF51_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 2.160e-10
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L FWK+  K FP+LS+VAR ++  P + AA+ER+FS  G ++S RR  +    VD ILFL
Sbjct:   73 LIFWKANQKHFPLLSKVARTIHCIPATTAAVEREFSGGGLVMSERRSSINPNNVDNILFL 132
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A815FZH2_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815FZH2_9BILA)

HSP 1 Score: 60.1 bits (144), Expect = 4.940e-10
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L+FWK     FP L+ VAR +++ P+S+AA+ER FS AG LI+ RR  L  T V+ +LFL
Sbjct:   58 LSFWKEHENIFPHLASVARRIFSIPSSSAAVERQFSAAGQLINQRRSNLDPTIVNNVLFL 117
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A821H846_9BILA (Hypothetical protein n=12 Tax=Rotaria socialis TaxID=392032 RepID=A0A821H846_9BILA)

HSP 1 Score: 61.2 bits (147), Expect = 1.880e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L FWK+  K FP+LS+VAR ++  P + AA+ER+FS  G ++S RR  +    VD ILFL
Sbjct:  712 LIFWKANQKHFPLLSKVARTIHCIPATTAAVEREFSGGGLVMSERRSSINPNNVDNILFL 771
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A2V3IUX2_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX2_9FLOR)

HSP 1 Score: 58.2 bits (139), Expect = 3.760e-9
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFLH 183
            L +W+S    +P LSQV + V   P S+A  ERDF  AG+L+S++R ++ S +VD+ LFL+
Sbjct:   24 LMWWRSRECRYPYLSQVVKAVLGSPASSAQTERDFGVAGSLLSSKRNKIDSAFVDISLFLN 84
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BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A819TN21_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A819TN21_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 6.570e-9
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L+FWK     FP L+ VAR +++ P S+AA+ER FS AG LI+ RR  L  T V+ ILFL
Sbjct:  661 LSFWKEHENIFPHLASVARRIFSIPCSSAAVERQFSAAGQLINQRRSNLDPTIVNNILFL 720
[Close]
BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A818W0Q5_9BILA (Hypothetical protein n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A818W0Q5_9BILA)

HSP 1 Score: 59.7 bits (143), Expect = 6.590e-9
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L+FWK     FP L+ VAR +++ P S+AA+ER FS AG LI+ RR  L  T V+ ILFL
Sbjct:  895 LSFWKEHENIFPHLASVARRIFSIPCSSAAVERQFSAAGQLINQRRSNLDPTIVNNILFL 954
[Close]
BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A815ILS8_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A815ILS8_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 8.490e-9
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L+FWK     FP L+ VAR +++ P S+AA+ER FS AG LI+ RR  L    V+ ILFL
Sbjct:  100 LSFWKEHENIFPHLASVARRIFSIPCSSAAVERQFSAAGQLINQRRSNLDPAIVNNILFL 159
[Close]
BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Match: A0A817WUB0_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817WUB0_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 8.490e-9
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLGSTYVDMILFL 180
            L+FWK     FP L+ +AR +++ P S+AA+ER FS AG LI+ RR  L  T ++ ILFL
Sbjct:  100 LSFWKEHENIFPHLASIARRIFSIPCSSAAVERQFSAAGQLINQRRSNLDPTTLNNILFL 159
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig149.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ82_9PHAE4.960e-1249.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE1.170e-1057.69Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A818DF51_9BILA2.160e-1048.33Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A815FZH2_9BILA4.940e-1050.00Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A821H846_9BILA1.880e-948.33Hypothetical protein n=12 Tax=Rotaria socialis Tax... [more]
A0A2V3IUX2_9FLOR3.760e-944.26Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
A0A819TN21_9BILA6.570e-951.67Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A818W0Q5_9BILA6.590e-951.67Hypothetical protein n=1 Tax=Rotaria sordida TaxID... [more]
A0A815ILS8_9BILA8.490e-950.00Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
A0A817WUB0_9BILA8.490e-948.33Hypothetical protein n=2 Tax=Rotaria sp. Silwood2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig149contigP-wetherbeei_contig149:676..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7029.ACYPI085170-PA
PFAMsDBD_Tnp_Hermes,Dimer_Tnp_hAT
Model size183
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.56e-09
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3A4I2@33154|Opisthokonta,3BRWZ@33208|Metazoa,3D90A@33213|Bilateria,423WH@6656|Arthropoda
DescriptionhAT family C-terminal dimerisation region
Cds size183
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.90063-CDS-P-wetherbeei_contig149:675..8581683186036.90063-CDS-P-wetherbeei_contig149:675..858Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig149 676..858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig149.1.1prot_P-wetherbeei_contig149.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig149 676..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig149.1.1

>prot_P-wetherbeei_contig149.1.1 ID=prot_P-wetherbeei_contig149.1.1|Name=mRNA_P-wetherbeei_contig149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=61bp
LTFWKSLVKEFPILSQVARVVYAHPTSAAAIERDFSDAGNLISNRRGRLG
STYVDMILFLH
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mRNA from alignment at P-wetherbeei_contig149:676..858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig149.1.1 ID=mRNA_P-wetherbeei_contig149.1.1|Name=mRNA_P-wetherbeei_contig149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig149:676..858- (Phaeothamnion wetherbeei SAG_119_79)
CTGACATTTTGGAAATCGTTGGTCAAGGAGTTTCCGATCCTTTCCCAAGT
GGCACGCGTTGTATACGCACATCCGACGTCGGCTGCGGCAATCGAGAGGG
ACTTTAGCGACGCTGGCAATCTCATTTCGAACCGGCGTGGGAGGTTGGGG
TCAACATACGTGGACATGATTCTCTTTCTCCAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig149:676..858-

>mRNA_P-wetherbeei_contig149.1.1 ID=mRNA_P-wetherbeei_contig149.1.1|Name=mRNA_P-wetherbeei_contig149.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=183bp|location=Sequence derived from alignment at P-wetherbeei_contig149:676..858- (Phaeothamnion wetherbeei SAG_119_79)
CTGACATTTTGGAAATCGTTGGTCAAGGAGTTTCCGATCCTTTCCCAAGT
GGCACGCGTTGTATACGCACATCCGACGTCGGCTGCGGCAATCGAGAGGG
ACTTTAGCGACGCTGGCAATCTCATTTCGAACCGGCGTGGGAGGTTGGGG
TCAACATACGTGGACATGATTCTCTTTCTCCAT
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