mRNA_P-wetherbeei_contig14888.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14888.2.1
Unique NamemRNA_P-wetherbeei_contig14888.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: D7G6Q8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Q8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.020e-27
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    7 AVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLAVSDGGSNRNSRLEGVRSRLGWPEAGLNQF 282
            AV+ D  LK+VD D + LY+ A AKSAVPP G D +EFL KP DGLV++R+KS   V+ GP+ V DG SNRN RLE +R +LGWPE G++ +
Sbjct:  129 AVENDPQLKLVDQDADALYISAMAKSAVPPDGFDKVEFLFKPSDGLVSFRSKSLKNVYAGPVIVGDGNSNRN-RLEALRKKLGWPEEGIDNY 219          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A7S3XUK8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUK8_HETAK)

HSP 1 Score: 103 bits (256), Expect = 3.740e-25
Identity = 47/90 (52.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    1 VNAVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLAVSDGGSNRNSRLEGVRSRLGWPEAG 270
            V  +K D  LK+ ++D E+ YLRA AKSA+PPTG+DD+EFL++P+D + TYRT SR+ V+VGP+ + DGG+N+N RL+ +R +L W   G
Sbjct:  129 VKIIKEDPLLKLEELDNEKFYLRATAKSAIPPTGLDDLEFLLRPEDKIATYRTASREAVYVGPVLLGDGGANQN-RLDKLRYQLKWDVVG 217          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A835YQ01_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ01_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.290e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    7 AVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLAVSDGGSNRNSRLEGVRSRLGWPEAG 270
            A + DS L+V++ D  RLYL  EAKS V    +DD EF++KP DGLVT+ +KSR  V +GP+ VSDGG+ +N RLE +R RLGWP AG
Sbjct:  124 AAEKDSLLRVLEADAGRLYLHCEAKSGVGGD-MDDFEFVVKPGDGLVTFSSKSRSNVTLGPVTVSDGGAMKN-RLETLRYRLGWPSAG 209          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A4D9D6F4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6F4_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.020e-19
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VNAVKADSTLKVVDVD--VERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLA--VSDGGSNRNSRLEGVRSRLGW 258
            V AV+A   LKVV++D   ++ YLRAEA S VPP G+DD+EFL+ P DGLV +R+ SR   F+ PL   V DGGS +  RLE ++  +GW
Sbjct:   21 VRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKK-RLETIQKSVGW 109          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A7S1IFF5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IFF5_9EUGL)

HSP 1 Score: 86.7 bits (213), Expect = 2.330e-18
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:    1 VNAVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLA--VSDGGSNRNSRLEGVRSRLGWPE 264
            V +V  +    +++VD  R Y+ A A SAVPPT +DDIEFL++PDD LVT+R  +R +VFV PL   V D G+ ++ RL  +R RLGW E
Sbjct:  213 VESVSEEQGAMLIEVDESRYYIHATAPSAVPPTSLDDIEFLMRPDDSLVTHRVATRKSVFVYPLTQIVGDQGATKD-RLNSIRERLGWAE 301          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: W7TWW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWW3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.870e-17
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 1
Query:    1 VNAVKADSTLKVVDVD--VERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLA--VSDGGSNRNSRLEGVRSRLGW 258
            V AV+A   LKVV++D   ++ YLRAEA S VPP G+DD+EFL+ P DGLV +R+ SR   F+ PL   V DGGS +  RLE ++  +GW
Sbjct:  164 VRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKK-RLETIQKAVGW 252          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A7S0QPZ6_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QPZ6_9CRYP)

HSP 1 Score: 82.4 bits (202), Expect = 8.680e-17
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    7 AVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGP--LAVSDGGSNRNSRLEGVRSRLGWPE 264
            AV+ D +L+VV V+    YLRAEAKS VP  G DD+EFL+ P + +VTYR+ SR  V++ P  +A+ DGG  R  R+ G+   LGW E
Sbjct:  162 AVERDPSLRVVQVNDTAFYLRAEAKSKVPQDGTDDVEFLLIPSEKIVTYRSASRQNVYIYPYQVAIPDGGYQRQ-RMRGLLQELGWVE 248          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A7R9YNQ1_DIALT (Hypothetical protein (Fragment) n=3 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YNQ1_DIALT)

HSP 1 Score: 79.3 bits (194), Expect = 4.080e-16
Identity = 40/86 (46.51%), Postives = 59/86 (68.60%), Query Frame = 1
Query:    4 NAVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLAVSDGGSN-RNSRLEGVRSRLGW 258
            +A+ +   L +V+ D   LYLRAE+ S+VPPT +DD+EF ++  DGLVTY++++RDTVFV PL    G ++    RL  +R+RL W
Sbjct:  134 DAIASTPGLTIVESDDAALYLRAESPSSVPPTSVDDLEFALRRSDGLVTYKSETRDTVFVYPLQRPVGCNDCHKKRLPELRTRLRW 219          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A835YK12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK12_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.310e-15
Identity = 38/77 (49.35%), Postives = 57/77 (74.03%), Query Frame = 1
Query:   34 VVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLA--VSDGGSNRNSRLEGVRSRLGW 258
            +VDV+ + LY+ AE  + VPP  +D +EFL++P D + ++R+ +RD+VFV PL   VSD GSNR+ RLE +R++LGW
Sbjct:   83 LVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRD-RLEAIRNQLGW 158          
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Match: A0A7S2RG67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG67_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.120e-15
Identity = 45/88 (51.14%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   40 DVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVTYRTKSRDTVFVGPLA--VSDGGSNRNSRLEGVRSRLGW-----PEAGLNQF 282
            DV  ERLYL   A SAVPP G DD+EF++ P + LV +R+ SR +VF+ PL   VSD G +  SRL+ VRS LGW      + GL QF
Sbjct:  155 DVSTERLYLHVTAPSAVPPAGTDDLEFVLDPKEKLVFFRSASRSSVFLFPLQQPVSDNGRHL-SRLQNVRSTLGWGSLSLEDMGLAQF 241          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14888.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6Q8_ECTSI1.020e-2756.52Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3XUK8_HETAK3.740e-2552.22Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YQ01_9STRA7.290e-2255.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9D6F4_9STRA9.020e-1951.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1IFF5_9EUGL2.330e-1848.89Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
W7TWW3_9STRA1.870e-1751.11Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S0QPZ6_9CRYP8.680e-1748.86Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7R9YNQ1_DIALT4.080e-1646.51Hypothetical protein (Fragment) n=3 Tax=Diacronema... [more]
A0A835YK12_9STRA1.310e-1549.35Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2RG67_9STRA2.120e-1551.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14888contigP-wetherbeei_contig14888:816..1473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog45157.CMI167CT
PFAMsDUF1499
Model size282
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0009579,GO:0031977,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044436,GO:0044444,GO:0044464
Exons3
Evalue6.22e-14
EggNOG OGs28JPF@1|root,2QS2R@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1499
Ec32 orthologEc-26_000490.1
Cds size282
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.7037437-CDS-P-wetherbeei_contig14888:815..8731683186036.7037437-CDS-P-wetherbeei_contig14888:815..873Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14888 816..873 -
1683186036.71669-CDS-P-wetherbeei_contig14888:1035..11201683186036.71669-CDS-P-wetherbeei_contig14888:1035..1120Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14888 1036..1120 -
1683186036.7266011-CDS-P-wetherbeei_contig14888:1334..14731683186036.7266011-CDS-P-wetherbeei_contig14888:1334..1473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14888 1335..1473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14888.2.1prot_P-wetherbeei_contig14888.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14888 816..1473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14888.2.1

>prot_P-wetherbeei_contig14888.2.1 ID=prot_P-wetherbeei_contig14888.2.1|Name=mRNA_P-wetherbeei_contig14888.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=94bp
VNAVKADSTLKVVDVDVERLYLRAEAKSAVPPTGIDDIEFLIKPDDGLVT
YRTKSRDTVFVGPLAVSDGGSNRNSRLEGVRSRLGWPEAGLNQF
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mRNA from alignment at P-wetherbeei_contig14888:816..1473-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14888.2.1 ID=mRNA_P-wetherbeei_contig14888.2.1|Name=mRNA_P-wetherbeei_contig14888.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=658bp|location=Sequence derived from alignment at P-wetherbeei_contig14888:816..1473- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACGCCGTGAAGGCGGACTCGACGCTGAAGGTTGTCGACGTGGATGT AGAGCGGCTGTATTTAAGGGCCGAAGCGAAGAGCGCGGTGCCGCCGACGG GCATCGACGACATTGAATTCCTGATCAAGCCGGACGATGGTGCGGCGGGT CACGTTTCCCAACTCAGCAATTTTACCTCCGTCCGTGGTTCTTCGCAGGT TTTCAAAATTTCTGAACCATTCCCTTTTTCGTGCCGCGTTCTGTGCAGCC CCATTGGCCGCTGCAATGTTGTCGCCGCTAATACAGCAGCCGTTACTAAC CTTGTCCATCATCCTTCCGCACTGTCGCATGCACATATGTGGTTGATCCG CAGGCCTCGTCACCTACCGCACCAAGAGCCGGGACACGGTGTTTGTGGGG CCTTTGGCCGTCAGCGACGGTGGCTCTAATCGCAACAGGTGTTGTGGGGA TCTCCTTAGGTCCGCCAGTCCTCAGTCTGTTCCGGCCTCCATTTTGCTGC GTTCAATCACGGATGTGGAAGCGTTTTTTGGGTTCAATGTTTGTGTGCAT TTGATGTCGCACGCTTTACAAATACCTTAGGGTTTCTTCTCTCTTCCGAG CAGGCTGGAGGGCGTTCGGAGCCGGCTGGGGTGGCCCGAGGCTGGTCTGA ACCAATTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14888:816..1473-

>mRNA_P-wetherbeei_contig14888.2.1 ID=mRNA_P-wetherbeei_contig14888.2.1|Name=mRNA_P-wetherbeei_contig14888.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=282bp|location=Sequence derived from alignment at P-wetherbeei_contig14888:816..1473- (Phaeothamnion wetherbeei SAG_119_79)
GTGAACGCCGTGAAGGCGGACTCGACGCTGAAGGTTGTCGACGTGGATGT
AGAGCGGCTGTATTTAAGGGCCGAAGCGAAGAGCGCGGTGCCGCCGACGG
GCATCGACGACATTGAATTCCTGATCAAGCCGGACGATGGCCTCGTCACC
TACCGCACCAAGAGCCGGGACACGGTGTTTGTGGGGCCTTTGGCCGTCAG
CGACGGTGGCTCTAATCGCAACAGCAGGCTGGAGGGCGTTCGGAGCCGGC
TGGGGTGGCCCGAGGCTGGTCTGAACCAATTT
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