mRNA_P-wetherbeei_contig14882.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14882.1.1
Unique NamemRNA_P-wetherbeei_contig14882.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: D8LDJ5_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ5_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 1.090e-76
Identity = 134/221 (60.63%), Postives = 161/221 (72.85%), Query Frame = 1
Query:    1 SFAGQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRREPDFGDRDNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVWLTKG--RRLDG 657
            S  GQHC+NNLVQ+  ++A DLA++A ELD +ERQ ML+ G+DTP+AL+FLAE+SGNVDA+GNFS+QVLN ALKR Y   L SAGSE V  +L+TTG + E+ FV NRH+HW A+R+I G Y++LNS L  P  ITTFALEA L Q+R DGYSVFVVRG   LPPP  EP  G RD WYR  +LL+  RGG GS G       TAA DVWL  G  +RLDG
Sbjct:    3 SLCGQHCINNLVQAASYSAADLADIALELDDQERQHMLAAGSDTPDALKFLAEESGNVDAAGNFSIQVLNTALKRLYGAYLVSAGSESV-GKLSTTGYDVEDAFVLNRHAHWVAVRSIGGAYWDLNSMLDNPTRITTFALEAYLHQLREDGYSVFVVRGDD-LPPPATEPREGSRDCWYRVKDLLEVSRGGKGSGGALN----TAATDVWLNSGPGQRLDG 217          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A836CJ83_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ83_9STRA)

HSP 1 Score: 239 bits (610), Expect = 2.070e-76
Identity = 120/183 (65.57%), Postives = 145/183 (79.23%), Query Frame = 1
Query:    1 SFAGQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRRE----PDFGDRDNWY 537
            S  GQHCLNNL+Q+ +F APDLA++AH LDAKERQ+ML  G  TP+AL+F AEDSGNVD +GNFSLQVL+EAL  RY L+LESAGSE V  +L+TTG + E GFVCNR +HWFA+R++ GRY+NLNSTL+ PE IT++ALEATL Q R DGYSVFVVRGG  LPPP  E     D G+ ++WY
Sbjct:   12 SLCGQHCLNNLLQACIFTAPDLADIAHVLDAKERQLMLELGHSTPDALKFQAEDSGNVDEAGNFSLQVLSEALTLRYGLRLESAGSERVAGKLSTTGYDSEAGFVCNRQAHWFAVRSVGGRYWNLNSTLERPEWITSYALEATLHQYRLDGYSVFVVRGG-TLPPPSTEGPYGSDAGNAEDWY 193          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7S2SLM5_9STRA (Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLM5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 2.000e-49
Identity = 96/216 (44.44%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    1 SFAGQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLP-PPRREPDFG-DRDNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVWLTKG 642
            +  GQHCLNNL+Q   F+  DLA++A E+D  ERQMML  G  TPEAL+FLAEDSGNVD SGNFS+QVL  AL+R + L L+  G+      L    L   + F+CN+ +HWF +R + G Y+NLNS L+ PE ++ F L A L Q++ADGY VF+V  G  LP PP   P+ G    + + +   L       GS  G+        +D W   G
Sbjct:   24 ALCGQHCLNNLLQGTYFSPGDLADIAAEMDRLERQMMLEMGDATPEALKFLAEDSGNVDESGNFSIQVLKRALERSHELVLDHVGATS----LEGQDLLSHDAFICNKSNHWFTVRKLYGLYWNLNSMLERPEKVSDFYLSAFLMQLQADGYDVFIVSPGANLPDPPHGGPEAGMGAASCFHTVSSLSRS----GSTAGSSTAAAGEQKDPWAMAG 231          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7S4DEZ6_HETAK (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEZ6_HETAK)

HSP 1 Score: 163 bits (412), Expect = 3.310e-47
Identity = 79/132 (59.85%), Postives = 102/132 (77.27%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHI 405
            GQHCLNNL+Q   F+AP LA++  ELDA+ER++ML  GADTPEALRFLAEDSGNVD +GNFS+QVLN AL++ + L L + G  ++RD +      +EEGFVCNR +HWFAIR +   ++NLNSTL+ PEH+
Sbjct:   23 GQHCLNNLLQGPYFDAPGLAQIGQELDAEERRVMLEAGADTPEALRFLAEDSGNVDETGNFSVQVLNTALEKSHGLTLLNTGRRELRDSIRD--YTKEEGFVCNRSAHWFAIRRVGRYWWNLNSTLERPEHV 152          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A1E7EUB1_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUB1_9STRA)

HSP 1 Score: 162 bits (410), Expect = 2.060e-44
Identity = 96/231 (41.56%), Postives = 132/231 (57.14%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQ---GADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPP---RREPDFGDRDNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVWLT--KGRRLDGKDRAGSG 678
            GQH LNNLVQ+N F+A  LAE+A++LD  E   M      G ++ + L  +AE SGNVD SGNFS++VL  ALK +Y L L +  ++DV +R     +   EGF+CN+ +HWFAIR I+GR++NLNS  + P+ I+ F L   +A  ++ GY+VF V  G  LP     +     G    W++  +L+K K          G   VTAA D W T   G RLDG   + SG
Sbjct:   20 GQHALNNLVQANAFSAGQLAEIAYQLDQMELDYMAQNDEGGRNSKDYLNRIAEGSGNVDPSGNFSIEVLRSALKTKYSLDLPNVLAKDVNERFGVGDVTEMEGFICNKDAHWFAIRMINGRFWNLNSMDERPKIISHFKLATEIAGFQSSGYTVFCVPKG--LPSACTTKAGSSVGLPQYWWKEDDLVKGK----------GKDAVTAATDTWRTAGSGMRLDGGSTSASG 238          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7S2A2Q1_TRICV (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2Q1_TRICV)

HSP 1 Score: 161 bits (407), Expect = 4.860e-44
Identity = 100/225 (44.44%), Postives = 129/225 (57.33%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQ---GADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPP---RREPDFGDRDNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVW--LTKGRRLDGK 660
            GQH LNNLVQ  VF+A  LAE+AH+LD  E   M      G  + E L  +AE SGNVD +GNFS++VL  AL+ RY + L +   + V D  + T +   EGF+CNR SHWFAIR I+GRY+NLNST + PE I+ F L A +   +  GYSVF V    KLPPP    +  + G    W++  +L+K K           A  +T A D W  +  G RLDGK
Sbjct:   22 GQHALNNLVQECVFSADALAEIAHQLDEMELTYMAQNNEGGIRSKEYLERVAEGSGNVDETGNFSIEVLRAALQNRYDMSLPNIAQQGVLDGKDVTDI---EGFICNRDSHWFAIRKINGRYWNLNSTKERPEFISQFRLAAEIQGFQEAGYSVFCVVDK-KLPPPCITSQGRERGLPQYWWKEEDLVKGK-----------ADAITGANDPWRNVGGGMRLDGK 231          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7S0SUA2_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SUA2_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.160e-42
Identity = 88/187 (47.06%), Postives = 113/187 (60.43%), Query Frame = 1
Query:    1 SFAGQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRREPDF-GDRDNWYRSTELLK 558
            S  GQHCLNNL+Q   F + DLAE+A +LDAKE Q +     +     RF+ E SGNVD SGNFSLQVL EALK  + + L S  SE+   RL+      EEGF+ N   HW+ IR I+  ++NLNST++ PE I+ F L A L+Q+  +G SVFV RG  K+PP +       D   WY   EL+K
Sbjct:   13 SLCGQHCLNNLLQEPYFTSIDLAEIAQQLDAKELQYLTEDNDNQMNINRFINEGSGNVDNSGNFSLQVLKEALKSLHNIDLISWTSEE--GRLDIIDPTIEEGFIINHSQHWYTIRKINDIWWNLNSTIQVPEKISPFYLSAFLSQLINEGSSVFVARG--KIPPQKTSRGITSDNCKWYHIDELIK 195          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A6V2A425_9STRA (Ubiquitinyl hydrolase 1 n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2A425_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.610e-42
Identity = 95/225 (42.22%), Postives = 129/225 (57.33%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQ---GADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRREPDFGDR---DNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVW--LTKGRRLDGK 660
            GQH LNNLVQ+  F+   LAE+A +LD  E   M      G  + + +R +AE SGNVDASGNFS++VL  AL  +  L L +   + + D+++ T +   EGF+CNR SHWFAIR I+GRY+NLNST + PE I+ F L A +  ++ +GYSVF V     LPPP    +  +R     W++  +L+K K              VT A D W  +  G RLDGK
Sbjct:   22 GQHALNNLVQACAFSPGMLAEIAQQLDQMELNYMAENDEGGTRSKDYIRRVAEGSGNVDASGNFSIEVLRSALLTQNNLSLPNIRQQGILDQMDITDI---EGFICNRESHWFAIRKINGRYWNLNSTKERPEQISHFRLAAEIEGLQQEGYSVFCVTDA--LPPPCTTNEGRERGLPQYWWKEEDLVKDKTDA-----------VTGATDPWKNVGSGMRLDGK 230          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7S2LJI3_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LJI3_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.740e-41
Identity = 96/231 (41.56%), Postives = 128/231 (55.41%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQ---GADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRREP---DFGDRDNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVW--LTKGRRLDGKDRAGSG 678
            GQH LNNLVQ+N F    LAE+A +LD  E   M +    G  + + L+ LAE SGNVD SGNFS++VL  AL  RY ++L +   +     L+   +   +GF+CNR +HWFAIR I+ RY+NLNSTL+ PE I+ F L A +  ++  GYSVF V     LPPP       D G    W++  +LLK K              +T A D W  +  GRRLDG  ++  G
Sbjct:   16 GQHALNNLVQANAFTPVSLAEIAGQLDQMELNYMANNNEGGVSSKDYLKRLAEGSGNVDESGNFSIEVLRSALLSRYNIELPNIRQQG----LSKVEVTTMDGFICNRSAHWFAIRKINDRYWNLNSTLERPEVISHFRLAAEVEALQNSGYSVFCVVDS--LPPPCTNEAMMDQGLPKYWWKEEDLLKGKTNA-----------MTRADDPWKDVGSGRRLDGGKKSSVG 229          
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Match: A0A7R9VWR2_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VWR2_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.560e-40
Identity = 97/225 (43.11%), Postives = 125/225 (55.56%), Query Frame = 1
Query:   10 GQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQ---GADTPEALRFLAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNREEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRADGYSVFVVRGGGKLPPPRREPDFGDR---DNWYRSTELLKAKRGGGGSAGGNGAGPVTAAQDVWLTKG--RRLDGK 660
            GQH LNNLVQ  VF+A  LAE+A +LD  E   M      G  + + ++ +AE SGNVD +GNFS++VL  ALK RY L L +   + V D  + T +   EGF+CNR SHWFAIR I+ RY+NLNST + PE I+ F L A +  +   GYSVF V    KLPPP       +R     W++  +L+K K           +  VT   D W   G   RLDGK
Sbjct:   16 GQHALNNLVQECVFSADTLAEIALQLDQVELAYMAQNDEGGTSSKDYIKRVAEGSGNVDEAGNFSIEVLRAALKNRYGLSLPNVRQQGVLDGRDVTEI---EGFICNRDSHWFAIRKINDRYWNLNSTKEKPEQISHFRLAAEIEALHDSGYSVFCVIDQ-KLPPPCTTSVGRERGLPQYWWKEDDLVKGK-----------SDAVTRETDPWRKAGGGMRLDGK 225          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14882.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDJ5_ECTSI1.090e-7660.63Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ83_9STRA2.070e-7665.57Ubiquitinyl hydrolase 1 n=1 Tax=Tribonema minus Ta... [more]
A0A7S2SLM5_9STRA2.000e-4944.44Ubiquitinyl hydrolase 1 n=2 Tax=Rhizochromulina ma... [more]
A0A7S4DEZ6_HETAK3.310e-4759.85Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Heteros... [more]
A0A1E7EUB1_9STRA2.060e-4441.56Ubiquitinyl hydrolase 1 n=1 Tax=Fragilariopsis cyl... [more]
A0A7S2A2Q1_TRICV4.860e-4444.44Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Trieres... [more]
A0A7S0SUA2_9STRA2.160e-4247.06Ubiquitinyl hydrolase 1 n=1 Tax=Chromulina nebulos... [more]
A0A6V2A425_9STRA8.610e-4242.22Ubiquitinyl hydrolase 1 n=3 Tax=Ditylum brightwell... [more]
A0A7S2LJI3_9STRA2.740e-4141.56Ubiquitinyl hydrolase 1 n=1 Tax=Skeletonema marino... [more]
A0A7R9VWR2_9STRA1.560e-4043.11Ubiquitinyl hydrolase 1 n=1 Tax=Pseudictyota dubia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14882contigP-wetherbeei_contig14882:186..1499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LDJ5
Preferred nameATXN3
PFAMsJosephin,SUIM_assoc,UBX,UIM
Model size771
Max annot lvl2759|Eukaryota
KEGG koko:K11863
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001012,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005759,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006325,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006515,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007610,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010810,GO:0016020,GO:0016043,GO:0016234,GO:0016569,GO:0016570,GO:0016575,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019899,GO:0019941,GO:0023052,GO:0030029,GO:0030036,GO:0030155,GO:0030162,GO:0030163,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031625,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0033036,GO:0033554,GO:0034605,GO:0034641,GO:0034976,GO:0035520,GO:0035601,GO:0035640,GO:0035966,GO:0035967,GO:0036211,GO:0036459,GO:0036503,GO:0042176,GO:0042221,GO:0042405,GO:0042802,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045103,GO:0045104,GO:0045732,GO:0045862,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051603,GO:0051716,GO:0051788,GO:0060255,GO:0061136,GO:0061578,GO:0065007,GO:0070011,GO:0070013,GO:0070536,GO:0070646,GO:0070647,GO:0070887,GO:0070932,GO:0071108,GO:0071218,GO:0071310,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0098732,GO:0098916,GO:0099536,GO:0099537,GO:0101005,GO:0140096,GO:1901360,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904292,GO:1904294,GO:1904327,GO:1904379,GO:1905897,GO:1905898,GO:1990380
Exons4
Evalue1.79e-77
EggNOG OGsKOG2935@1|root,KOG2935@2759|Eukaryota
Descriptionprotein localization to cytosolic proteasome complex
Cds size771
COG categoryO
BRITEko00000,ko00001,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.563305-CDS-P-wetherbeei_contig14882:185..6211683186036.563305-CDS-P-wetherbeei_contig14882:185..621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14882 186..621 -
1683186036.5744488-CDS-P-wetherbeei_contig14882:920..11191683186036.5744488-CDS-P-wetherbeei_contig14882:920..1119Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14882 921..1119 -
1683186036.58396-CDS-P-wetherbeei_contig14882:1259..13111683186036.58396-CDS-P-wetherbeei_contig14882:1259..1311Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14882 1260..1311 -
1683186036.5929787-CDS-P-wetherbeei_contig14882:1415..14991683186036.5929787-CDS-P-wetherbeei_contig14882:1415..1499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14882 1416..1499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14882.1.1prot_P-wetherbeei_contig14882.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14882 186..1499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14882.1.1

>prot_P-wetherbeei_contig14882.1.1 ID=prot_P-wetherbeei_contig14882.1.1|Name=mRNA_P-wetherbeei_contig14882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=257bp
SFAGQHCLNNLVQSNVFNAPDLAELAHELDAKERQMMLSQGADTPEALRF
LAEDSGNVDASGNFSLQVLNEALKRRYLLQLESAGSEDVRDRLNTTGLNR
EEGFVCNRHSHWFAIRAIDGRYFNLNSTLKFPEHITTFALEATLAQIRAD
GYSVFVVRGGGKLPPPRREPDFGDRDNWYRSTELLKAKRGGGGSAGGNGA
GPVTAAQDVWLTKGRRLDGKDRAGSGGGGSSGADGNGSGGGAAAEDDDLA
FAIAMSL
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mRNA from alignment at P-wetherbeei_contig14882:186..1499-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14882.1.1 ID=mRNA_P-wetherbeei_contig14882.1.1|Name=mRNA_P-wetherbeei_contig14882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1314bp|location=Sequence derived from alignment at P-wetherbeei_contig14882:186..1499- (Phaeothamnion wetherbeei SAG_119_79)
TCATTTGCAGGACAACATTGCCTCAACAACCTCGTCCAGTCCAACGTCTT CAACGCACCCGACCTTGCAGAGTTAGCTCACGAGGTAAGAGATTTGTAAA GCTTACGGTATGGACGGGGCTTTCCGTTGCGGAAAAACAATGCGCGGCGT CCTTACATACCGCGCTCCTCCATCTTGTGCCCGAGCAGCTCGACGCTAAA GAACGACAAATGATGCTCAGCCAAGGGGCCGATACACCAGGTACGCCCGG TGTGAAGGAGGAGGCAAGAAAGCTGATCTCTTCCCTCCGCCCCAACTCTC CAGCAGCACAGACACATTGCAAACGCCTCGCTCTTGCAGGGTATCTTCCT CACCTTCCCAAATCACTTCACCGGTTGCAGAGGCGCTGCGGTTCCTGGCG GAGGACAGCGGCAACGTGGACGCCTCGGGCAACTTTTCGCTCCAGGTGCT CAACGAGGCGCTCAAGCGGCGTTACCTGCTGCAGCTCGAGTCGGCGGGCA GCGAGGATGTGCGCGACCGCCTCAACACGACGGGGCTCAACCGCGAGGAG GGTTTCGTCTGCAACCGACACTCCCACTGGTCTGTTGGCCTGTTTGGTTG GTCGGCCTTTCGTTCGTTTGAAGGATTCACGAATTGACTGGCGTCTTCGC GCTACTTGTTTCGACTGAAAAATTATCGGCAGGCTTTCTTTTCTTCCGTT TTCAAGGTATCGGCGGTGATGTTTACAAAGTTTTTGACGGGATTTCGTCT CCTTTCGGTTGGGGCCCGCATTTAGGAGGGAGGAACGGAGCAAGCATTGT GTAATCGCCTTTTCGCGTCTGCGGTCGTCCTATCTATGCTTATAGGCGAC TTTTCCACCCCCCGAATTGGCTGGTCAGGTTCGCCATCCGGGCCATCGAC GGGCGCTACTTCAACCTTAACTCGACCCTAAAGTTCCCGGAGCACATCAC CACCTTCGCGCTCGAGGCGACGCTGGCGCAGATCCGGGCCGACGGCTACT CTGTCTTTGTCGTGCGCGGCGGCGGGAAGCTGCCACCGCCCCGCCGCGAG CCGGACTTTGGCGACCGTGACAACTGGTACCGCTCAACCGAGCTGCTCAA GGCGAAGCGCGGCGGCGGCGGGAGCGCCGGCGGCAACGGGGCCGGGCCGG TGACGGCGGCGCAAGACGTGTGGCTGACCAAGGGGCGGCGGCTCGACGGG AAGGACCGCGCGGGCAGCGGCGGCGGCGGGAGCAGCGGGGCGGACGGCAA CGGAAGCGGCGGCGGTGCGGCGGCGGAGGACGACGACCTGGCGTTTGCAA TCGCAATGTCGCTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14882:186..1499-

>mRNA_P-wetherbeei_contig14882.1.1 ID=mRNA_P-wetherbeei_contig14882.1.1|Name=mRNA_P-wetherbeei_contig14882.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=771bp|location=Sequence derived from alignment at P-wetherbeei_contig14882:186..1499- (Phaeothamnion wetherbeei SAG_119_79)
TCATTTGCAGGACAACATTGCCTCAACAACCTCGTCCAGTCCAACGTCTT
CAACGCACCCGACCTTGCAGAGTTAGCTCACGAGCTCGACGCTAAAGAAC
GACAAATGATGCTCAGCCAAGGGGCCGATACACCAGAGGCGCTGCGGTTC
CTGGCGGAGGACAGCGGCAACGTGGACGCCTCGGGCAACTTTTCGCTCCA
GGTGCTCAACGAGGCGCTCAAGCGGCGTTACCTGCTGCAGCTCGAGTCGG
CGGGCAGCGAGGATGTGCGCGACCGCCTCAACACGACGGGGCTCAACCGC
GAGGAGGGTTTCGTCTGCAACCGACACTCCCACTGGTTCGCCATCCGGGC
CATCGACGGGCGCTACTTCAACCTTAACTCGACCCTAAAGTTCCCGGAGC
ACATCACCACCTTCGCGCTCGAGGCGACGCTGGCGCAGATCCGGGCCGAC
GGCTACTCTGTCTTTGTCGTGCGCGGCGGCGGGAAGCTGCCACCGCCCCG
CCGCGAGCCGGACTTTGGCGACCGTGACAACTGGTACCGCTCAACCGAGC
TGCTCAAGGCGAAGCGCGGCGGCGGCGGGAGCGCCGGCGGCAACGGGGCC
GGGCCGGTGACGGCGGCGCAAGACGTGTGGCTGACCAAGGGGCGGCGGCT
CGACGGGAAGGACCGCGCGGGCAGCGGCGGCGGCGGGAGCAGCGGGGCGG
ACGGCAACGGAAGCGGCGGCGGTGCGGCGGCGGAGGACGACGACCTGGCG
TTTGCAATCGCAATGTCGCTT
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