mRNA_P-wetherbeei_contig14877.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14877.1.1
Unique NamemRNA_P-wetherbeei_contig14877.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: D8LMG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMG0_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 9.570e-102
Identity = 152/220 (69.09%), Postives = 184/220 (83.64%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHSVEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD+EAT DQM+TLL++NP+RVYKTAYYRKQTKNHWARDDPGFAVLQ  FL+VA  AFGV F  RG W Y+ L++H+V +HWLL GV+ +SL RW+AN  LLQHRSHSVEQ VEW+YA DIH NSFFPLF+ LYVVQ LLLP+L+G+S  +LIL+NTLYAVAFS+YFYV+HLGYR+LPFL  TEVFLYPV  +++LL L+I+L P G+ +N T  MA +YF
Sbjct:    1 MDMEATADQMVTLLSVNPQRVYKTAYYRKQTKNHWARDDPGFAVLQTFFLVVATFAFGVAFGARGVWTYVGLLLHSVGVHWLLCGVVMSSLCRWIANSRLLQHRSHSVEQEVEWMYALDIHSNSFFPLFVCLYVVQLLLLPLLVGQSVWSLILANTLYAVAFSVYFYVTHLGYRSLPFLHTTEVFLYPVVGIIMLLLLSIILLPFGIRINATLAMAKLYF 220          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A835Z945_9STRA (UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z945_9STRA)

HSP 1 Score: 294 bits (753), Expect = 8.540e-97
Identity = 149/220 (67.73%), Postives = 180/220 (81.82%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHSVEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            +D+E+ CDQM+TLL++NP RVYKTAYYRKQTKN WARDDP FAVLQ  F +  AVA+G+ F LR FW Y+ L+ +AV LHWLLFGV AA+ GR LAN ++L  R+HSVEQ VEWLYAFDIHCN+FF LFI++YV QFLLLPVLLG S  AL+LSN LYA+ F  YFY++HLGYR+LPFL +TE FLYPV AV+ LLA +++L  LG+ +NMTRVMAHVYF
Sbjct:   39 LDMESACDQMVTLLSLNPGRVYKTAYYRKQTKNQWARDDPAFAVLQLAFSVAGAVAYGMAFGLRAFWGYIALIANAVLLHWLLFGVAAATAGRALANAHMLVRRAHSVEQRVEWLYAFDIHCNAFFMLFIVVYVGQFLLLPVLLGPSVGALLLSNALYALGFGAYFYITHLGYRSLPFLCKTETFLYPVVAVVTLLATSVLLAALGMRVNMTRVMAHVYF 258          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A7R9YBX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBX5_9STRA)

HSP 1 Score: 251 bits (641), Expect = 7.230e-80
Identity = 127/213 (59.62%), Postives = 164/213 (77.00%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHSVEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTR 639
            MD EAT DQM+TL + +P RVYKT +YRKQ KN WARDDP FAV Q L L V AVA+ + FR+     YL L+++ V + W LFG + A++G ++AN YLLQ  SHSV Q VEWLYAFDIHCN+FFPLF+L++V+QF LLP+LL K + ++ILSN LYA AFS+YFY++HLGYRALPFL++TEV+LYP+G V L   L++ + PLG+ +N TR
Sbjct:   40 MDFEATLDQMLTLASSDPGRVYKTNFYRKQMKNQWARDDPAFAVAQVLLLSVVAVAYALAFRVDSLSGYLSLILYCVVVDWFLFGCVVATIGWFVANKYLLQSHSHSVAQKVEWLYAFDIHCNAFFPLFLLVHVLQFFLLPILLLKVYPSMILSNLLYAAAFSVYFYITHLGYRALPFLTKTEVYLYPIGVVALAFVLSLFIAPLGVRINATR 252          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A1E7FEU6_9STRA (UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEU6_9STRA)

HSP 1 Score: 247 bits (631), Expect = 1.400e-78
Identity = 127/226 (56.19%), Postives = 168/226 (74.34%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLR-----GFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD+++  DQM T+L+  P  VYKTAYYRKQTKNHWARDDP FA L+ +FL V+ +A+ + FR+       FW Y      +V  +WL  G + A++GR +AN +L  H+S S V Q VEWLYAFDIHCN+FFP+F+LLY VQF LLP++LGKS  +L++SNTLYA  F+ Y+Y++HLGYRALPFLS+TEVFL+PV A+ L+  L +V +P GLG N +R+MAH+YF
Sbjct:   20 MDIQSALDQMKTILSTRPHVVYKTAYYRKQTKNHWARDDPAFAALEFIFLTVSCIAYAISFRVPVTEGIAFWLY------SVLFNWLGLGFIIATVGREMANRHLTDHKSTSHVRQSVEWLYAFDIHCNAFFPVFVLLYGVQFFLLPLVLGKSLFSLVVSNTLYAAGFAWYWYITHLGYRALPFLSQTEVFLFPVAAIALVFVLNLVGYPFGLGWNASRIMAHIYF 239          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A448ZP33_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZP33_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.640e-77
Identity = 127/224 (56.70%), Postives = 170/224 (75.89%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRL---RGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD+++  DQM TLL+  P  VYKT+YYRKQTKNHWARDDP FA L+ +FL ++ +A+ + FR+    G   +L    ++V  HWL FG++ A+ GR +AN +L   +S+S V Q VEWLYAFDIHCN+FFP+F+LLY VQF LLP++LGKS  ALI SNTLYA AF+ Y+Y++HLGYRALPFLS+TEVFL+P+ A+ L+  L +V +P G+G N +R+MAH+YF
Sbjct:   53 MDIQSALDQMKTLLSTRPHVVYKTSYYRKQTKNHWARDDPAFAALELIFLTISCIAYAISFRVPISEGIAFFL----YSVLFHWLGFGLIIATAGREMANRHLTDTKSNSHVRQSVEWLYAFDIHCNAFFPVFVLLYGVQFFLLPLVLGKSLFALIASNTLYAGAFAWYWYITHLGYRALPFLSQTEVFLFPIAAIGLVYVLNLVGYPFGMGWNASRIMAHIYF 272          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A7S2U7N4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7N4_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.720e-77
Identity = 125/228 (54.82%), Postives = 168/228 (73.68%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFR-------LRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD+++  DQM TL T++P+RVYKT+YYRKQTKNHWARDDP F  LQ +FL +A++A+ V FR         GF       + ++ ++W   G++ AS+GR  AN +L  H+S S V Q VEWLYAFDIHCN+FFPLF+ LY +QF LLP++LGKS L+L+L+NTLYA AFS YFY++HLGYRALPFLS TEVFL+P+  ++++  + +V +P G G N +R+MAH YF
Sbjct:   67 MDVQSALDQMRTLCTLSPQRVYKTSYYRKQTKNHWARDDPAFCFLQMVFLALASIAYCVAFREDSLVSSTIGF------AIKSILINWFGLGILIASIGREFANRHLTVHQSSSHVRQGVEWLYAFDIHCNAFFPLFVALYGLQFFLLPIVLGKSLLSLVLANTLYAAAFSWYFYITHLGYRALPFLSSTEVFLFPIAGIMIVYLINLVGYPFGFGWNASRIMAHFYF 288          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A7S1Y6X4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X4_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.780e-76
Identity = 125/220 (56.82%), Postives = 164/220 (74.55%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVY 657
            MD ++  DQM +LL   P  VYKTAYYRKQTKNHWARDDP F VLQA+FL+V+ VA+ V F+      +L  ++H++  +WL+ G +  S+ R +AN +L  H+S S V Q VEWLYAFDIHCN+FFPLF +LY VQF LLP++LG SFLAL+++NTLYAVAFS Y+Y++HLGYR+LPFL+ TEVF++P+ AV+LL  L +V +P   G N  RV A +Y
Sbjct:   20 MDAQSALDQMKSLLGSRPHTVYKTAYYRKQTKNHWARDDPAFCVLQAIFLLVSVVAYSVAFK-ASIGTFLGFLIHSLFWNWLVSGALVCSILREVANRHLTVHQSTSHVRQSVEWLYAFDIHCNAFFPLFCVLYGVQFFLLPLILGNSFLALVVANTLYAVAFSWYWYITHLGYRSLPFLTNTEVFMFPIAAVILLFVLNLVGYPFNFGWNFARVFAQIY 238          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A7S1GMY0_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GMY0_CYCTE)

HSP 1 Score: 239 bits (611), Expect = 1.990e-75
Identity = 128/222 (57.66%), Postives = 166/222 (74.77%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFR--LRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVY 657
            MD+++  DQM +LL   P  VYKT+YYRKQTKNHWARDDP F VLQA+FL VA++A+ V FR  L G   +L   +H +  +WL+ G + A++ R LAN +L  H+S S V+Q VEWLYAFDIHCN+FFPLF LLY VQF LLP++LGKS LA +LSNTLYA AFS Y+Y++HLGYRALPFLS TEVFL+P+  + L+  L +V +P  +G N +R++A +Y
Sbjct:   31 MDIQSALDQMRSLLGGRPHVVYKTSYYRKQTKNHWARDDPAFCVLQAVFLFVASLAYAVAFRSTLSGGMGFL---LHTILWNWLVAGTIVATIARELANRHLCVHQSTSHVKQTVEWLYAFDIHCNAFFPLFCLLYGVQFFLLPLVLGKSLLAFLLSNTLYAAAFSWYWYITHLGYRALPFLSNTEVFLFPIAGIALVFVLNLVGYPFDMGWNASRLLATIY 249          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A7S2ENT4_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ENT4_TRICV)

HSP 1 Score: 239 bits (611), Expect = 1.400e-74
Identity = 128/225 (56.89%), Postives = 165/225 (73.33%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVV----HAVALHWLLFGVMAASLGRWLANGYLLQHRSHS-VEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD ++  DQM TLLT  P+RVYKTAYYRKQTKNHWARDDP FA LQ  FL VA++A+ V F   G    L   +     ++ ++WL  G++ AS+ R ++N +L+ H S + V Q VE+LYAFDIHCN+FFPLF+L+Y VQF LLPV+LG+  +AL+LSN L+A AF  YFYV+HLGYRALPFL+ TEVFL+PV  V+LL  L ++ HP G G N +R+MA+VYF
Sbjct:   86 MDFQSALDQMKTLLTPQPQRVYKTAYYRKQTKNHWARDDPAFAALQIAFLSVASLAYSVAFGSDGLGGTLTAALGFGLKSILINWLAVGLVTASVCRSISNNHLVVHSSAAHVRQRVEFLYAFDIHCNAFFPLFVLIYGVQFFLLPVVLGRGLMALLLSNALFAAAFGWYFYVTHLGYRALPFLTNTEVFLFPVALVVLLFFLNLIGHPFGFGWNASRIMAYVYF 310          
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Match: A0A6V1WU61_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1WU61_HETAK)

HSP 1 Score: 236 bits (603), Expect = 4.880e-74
Identity = 118/220 (53.64%), Postives = 160/220 (72.73%), Query Frame = 1
Query:    1 MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFLMVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYLLQHRSHSVEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLALILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTIVLHPLGLGLNMTRVMAHVYF 660
            MD EA  DQ +TLL+ NP +VYK++YYRKQTKN WARDDP FAV+Q L L+ +A A+GV F    FWH+  ++   V + ++  GV  ASLG W AN  L Q R+ +V Q VEW +A+D HCN+  P F+LL+VVQ+ LLP+L+G+S+LAL  +NTLYA +   Y YV+HLGYRALPFLS TEV+LYP G ++LL  ++++L  +G+  NMTR+++H YF
Sbjct:   38 MDFEAAFDQFMTLLSRNPAQVYKSSYYRKQTKNQWARDDPAFAVIQILLLIASACAYGVAFSAGSFWHFFTIIFKMVGIQYVGVGVFIASLGSWFANARLRQVRAGTVAQRVEWAFAWDAHCNAHAPAFLLLHVVQYFLLPLLMGRSWLALAAANTLYAASLLAYVYVTHLGYRALPFLSNTEVYLYPAGVIILLYVISLLLGLVGVSCNMTRIVSHFYF 257          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMG0_ECTSI9.570e-10269.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z945_9STRA8.540e-9767.73UNC-50 n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A7R9YBX5_9STRA7.230e-8059.62Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1E7FEU6_9STRA1.400e-7856.19UNC-50 protein n=1 Tax=Fragilariopsis cylindrus CC... [more]
A0A448ZP33_9STRA1.640e-7756.70Uncharacterized protein n=2 Tax=Pseudo-nitzschia T... [more]
A0A7S2U7N4_9STRA2.720e-7754.82Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1Y6X4_9STRA2.780e-7656.82Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1GMY0_CYCTE1.990e-7557.66Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]
A0A7S2ENT4_TRICV1.400e-7456.89Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A6V1WU61_HETAK4.880e-7453.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14877contigP-wetherbeei_contig14877:38..1592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMG0
Preferred nameUNC50
PFAMsUNC-50
Model size876
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005794,GO:0006810,GO:0006937,GO:0007154,GO:0007165,GO:0007166,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0019866,GO:0023052,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044057,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051239,GO:0051641,GO:0051668,GO:0051716,GO:0065007,GO:0090257,GO:0097120,GO:0097159,GO:0098588,GO:0098791,GO:1901363
Exons3
Evalue1.57e-103
EggNOG OGsKOG3012@1|root,KOG3012@2759|Eukaryota
Descriptionprotein transport
Cds size666
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.195088-CDS-P-wetherbeei_contig14877:37..1751683186036.195088-CDS-P-wetherbeei_contig14877:37..175Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14877 38..175 +
1683186036.206229-CDS-P-wetherbeei_contig14877:363..6331683186036.206229-CDS-P-wetherbeei_contig14877:363..633Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14877 364..633 +
1683186036.2143931-CDS-P-wetherbeei_contig14877:1124..13821683186036.2143931-CDS-P-wetherbeei_contig14877:1124..1382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14877 1125..1382 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.224457-UTR-P-wetherbeei_contig14877:1382..15921683186036.224457-UTR-P-wetherbeei_contig14877:1382..1592Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14877 1383..1592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14877.1.1prot_P-wetherbeei_contig14877.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14877 38..1382 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14877.1.1

>prot_P-wetherbeei_contig14877.1.1 ID=prot_P-wetherbeei_contig14877.1.1|Name=mRNA_P-wetherbeei_contig14877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=222bp
MDLEATCDQMITLLTINPERVYKTAYYRKQTKNHWARDDPGFAVLQALFL
MVAAVAFGVVFRLRGFWHYLWLVVHAVALHWLLFGVMAASLGRWLANGYL
LQHRSHSVEQVVEWLYAFDIHCNSFFPLFILLYVVQFLLLPVLLGKSFLA
LILSNTLYAVAFSLYFYVSHLGYRALPFLSRTEVFLYPVGAVLLLLALTI
VLHPLGLGLNMTRVMAHVYFW*
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mRNA from alignment at P-wetherbeei_contig14877:38..1592+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14877.1.1 ID=mRNA_P-wetherbeei_contig14877.1.1|Name=mRNA_P-wetherbeei_contig14877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1555bp|location=Sequence derived from alignment at P-wetherbeei_contig14877:38..1592+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTCGAAGCGACCTGCGATCAAATGATAACCCTGTTGACAATCAA TCCGGAGCGGGTGTACAAGACGGCGTACTACCGGAAACAAACAAAAAACC ACTGGGCACGAGACGATCCAGGGTTTGCGGTGCTGCAGGTGCGTATTTTG TTCCTTTGGGCAGCAGCTCAAATGTCGCCTGTATCGATATATCGAAGGCG CTTCTGATGCCCCAAGGAAGAAAATCCAAAGAATAATCCCCTCAGATGTA TTCTTTTGGGCCGTTCCATCAATTCCCCGCTTATAAGACCATCATCGGTT GCGTTCTCCCCGGTCGCTTCGTCCAGGCGCTGTTCCTGATGGTGGCCGCG GTGGCCTTCGGGGTGGTGTTCCGGCTGCGGGGCTTCTGGCACTACCTGTG GCTGGTGGTGCACGCCGTGGCGCTGCACTGGCTGCTGTTTGGCGTGATGG CAGCGTCCCTGGGGCGGTGGCTCGCCAATGGGTACCTACTGCAGCACCGC TCCCACTCGGTGGAGCAGGTGGTGGAGTGGCTCTACGCCTTCGACATCCA CTGCAACTCCTTCTTTCCGCTTTTCATCCTCCTGTACGTTGTACAGGTCA GTAATCGGTCGCTGCATAGTTGCGCTCTCTCGCTTGGCTTGTCGCTGTTT GGCACCGCCATTAGCTCGGCGGCGGCTAATTATTGCCGCTCGCACGCCGC GCCATTGTGACGTTGTGCCTTCCTGTGTCGATGGGGTTGTTTCAACTGGT GTTGCTCTTTGAGTTTGAGGGACCTTTCTTCCCACATTATGTTCGAGCTC ATGCCGCGATTGCTCTGGTCGTTGGTTCACTAGAGAGAAATGCTTCCAAC AAGAGTCTTCTTCAACTAAACGCTTTTACTGGTTTTCTTCTCTTTTTGAG AATCCGGTTTCACTGCTTGCTAAAGTAAACAAGAAGACTCAAACTGGCAT GCGGGAGGCAAAGCTTGCTGTTGCATATCGACTTACCGTTGCTCGTTCCC TCTCTTCGCTTTCACTCGCATTACCTCGCTCTGCTCGGCTCTGGCGGCCA AACCGTCGATATGCCGCGGCAACACAACGCACCGCAGTTTTTGCTGCTCC CAGTGCTGCTGGGGAAGTCCTTCCTGGCGCTTATCCTCAGCAACACGCTC TACGCGGTGGCCTTCTCCCTCTATTTCTACGTCAGCCATCTTGGATACCG GGCGCTGCCGTTTCTGAGCCGGACCGAGGTGTTCTTGTACCCCGTAGGCG CCGTGCTCCTCCTGCTGGCGCTGACAATCGTTTTGCACCCGCTGGGGCTC GGGTTAAATATGACGCGGGTGATGGCGCACGTCTACTTTTGGTAGCGCAG GCGCCGCCGTTTAGACAGGAACGGCGGCGGAGCCGACGACACAAAAGGAA GTTGTGTGACAATAACTTGTTAAAATGCGGGGTTGGTTGCCGACAATGCG GATGTCGACACTGATACTACGGAGATGAGGTATAACATGAAAGTTGCAAA TGGAGCAGATGGGTGTGCCTTCGGACACGGCGCGTTGTCCCGTCCTTTCC TTTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14877:38..1592+

>mRNA_P-wetherbeei_contig14877.1.1 ID=mRNA_P-wetherbeei_contig14877.1.1|Name=mRNA_P-wetherbeei_contig14877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=666bp|location=Sequence derived from alignment at P-wetherbeei_contig14877:38..1592+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTCGAAGCGACCTGCGATCAAATGATAACCCTGTTGACAATCAA
TCCGGAGCGGGTGTACAAGACGGCGTACTACCGGAAACAAACAAAAAACC
ACTGGGCACGAGACGATCCAGGGTTTGCGGTGCTGCAGGCGCTGTTCCTG
ATGGTGGCCGCGGTGGCCTTCGGGGTGGTGTTCCGGCTGCGGGGCTTCTG
GCACTACCTGTGGCTGGTGGTGCACGCCGTGGCGCTGCACTGGCTGCTGT
TTGGCGTGATGGCAGCGTCCCTGGGGCGGTGGCTCGCCAATGGGTACCTA
CTGCAGCACCGCTCCCACTCGGTGGAGCAGGTGGTGGAGTGGCTCTACGC
CTTCGACATCCACTGCAACTCCTTCTTTCCGCTTTTCATCCTCCTGTACG
TTGTACAGTTTTTGCTGCTCCCAGTGCTGCTGGGGAAGTCCTTCCTGGCG
CTTATCCTCAGCAACACGCTCTACGCGGTGGCCTTCTCCCTCTATTTCTA
CGTCAGCCATCTTGGATACCGGGCGCTGCCGTTTCTGAGCCGGACCGAGG
TGTTCTTGTACCCCGTAGGCGCCGTGCTCCTCCTGCTGGCGCTGACAATC
GTTTTGCACCCGCTGGGGCTCGGGTTAAATATGACGCGGGTGATGGCGCA
CGTCTACTTTTGGTAG
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