mRNA_P-wetherbeei_contig1487.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1487.1.1
Unique NamemRNA_P-wetherbeei_contig1487.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1487.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1487contigP-wetherbeei_contig1487:672..2184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FKH1
Model size968
Max annot lvl2880.D7FKH1|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000699
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size966
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186036.141116-CDS-P-wetherbeei_contig1487:673..13631683186036.141116-CDS-P-wetherbeei_contig1487:673..1363Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1487 674..1363 -
1683186036.1527965-CDS-P-wetherbeei_contig1487:1908..21841683186036.1527965-CDS-P-wetherbeei_contig1487:1908..2184Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1487 1909..2184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1487.1.1prot_P-wetherbeei_contig1487.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1487 674..2184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1487.1.1

>prot_P-wetherbeei_contig1487.1.1 ID=prot_P-wetherbeei_contig1487.1.1|Name=mRNA_P-wetherbeei_contig1487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=322bp
ICLRNTKEKFRRGASKYTATLVPETNEMNMLSFATGSNEMTDGSEEGASS
SRRHPRKEGRQTKHRQCEDDNCFVQPSYAFEGQKPRYCVAHKAPGMVDVQ
HRRCETPSCAKQPHFANDGERARYCSAHKQPGMINVQNRRCGEFKCTREP
IYAVPGERAKYCSSHKTDGMINVKSRRCEAPGCTRHSLYAVEGAKARFCS
HHKAEGMIDVQSRKCEDPGCKKRSLYGVRGSKARFCSAHKGRDMIIIQRR
RCERSDCSRYPVFGFASTDQRGRFCPVHKEDGMVDLQLRRGPLPRVAVAP
RLAQPHGSGASASAGAGSGGAM
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mRNA from alignment at P-wetherbeei_contig1487:672..2184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1487.1.1 ID=mRNA_P-wetherbeei_contig1487.1.1|Name=mRNA_P-wetherbeei_contig1487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1513bp|location=Sequence derived from alignment at P-wetherbeei_contig1487:672..2184- (Phaeothamnion wetherbeei SAG_119_79)
ATTTGTTTAAGAAATACAAAAGAAAAATTCAGGAGAGGAGCGAGCAAATA
CACAGCCACATTGGTGCCAGAAACGAACGAAATGAATATGTTGAGCTTCG
CTACGGGATCTAATGAAATGACAGATGGTTCGGAAGAGGGAGCGAGCAGC
AGCAGGAGGCACCCTCGGAAAGAGGGAAGGCAAACAAAGCACCGACAGTG
TGAGGACGACAACTGCTTCGTGCAGCCGAGCTATGCGTTTGAGGGGCAAA
AGCCGCGATACTGCGTCGCGCACAAGGTGAGGCCATCTGGGAAACCAATG
ATGCGGGCGGCAATATAGTGGAGGAGAGGAAACCCAGCGTGGCACCGCGT
CGTGTCATGCCGGAATCTGCCTCAGCTCTCCGTCCGCGGCGGGCCGTTTA
AAGAAGAGCTTTTTTCCATCGACTTCGGGCTCTCACGTCGTCGACCTTTC
CATCCCTGTTGAGTTTTTCGGTGCTGCGGTTAACGTTTCAACGTTTGATG
AGCACTCTGGTCGAAAGCGAGCAAGGTTCTCTTTCCGGGGTGTCGGGGGA
TTCCTTTCCTGCACTCTTTCCCTGTCTGTGTCCGATTGTGAAAGGCGGAC
ACGGCGCGAGGAGAGACTTTTCTACGAGAGAAATTTCCACATGCGTTTCT
CTCTATCATTGAACATGGCGGGAAACATCTTCGCAGAAAAAAATGTGATT
TTTGGTTCTTCGCAACTCATTGTCCTTTTCCCGTCCCTCTCAGTCCGCCG
CCGCGCAACCACACAAAACAAACGATTGTCTTCCCCCTCTTATCCTCTGT
GCTCCTTTTCAAATCCATCAGGCGCCGGGCATGGTGGACGTGCAGCACCG
GCGTTGCGAGACGCCAAGTTGCGCCAAGCAGCCACACTTTGCCAACGACG
GCGAGCGTGCCCGCTACTGCTCCGCGCACAAGCAGCCTGGCATGATCAAC
GTGCAGAATCGCCGCTGTGGCGAGTTCAAGTGCACGCGGGAGCCCATTTA
CGCGGTCCCGGGCGAGCGTGCCAAGTACTGCAGCAGCCATAAGACGGATG
GCATGATCAACGTCAAATCGCGGCGCTGCGAGGCGCCCGGTTGCACGCGC
CACTCGTTGTACGCCGTGGAGGGCGCCAAGGCGCGCTTCTGCAGCCACCA
TAAGGCGGAGGGGATGATCGACGTTCAAAGCCGCAAGTGCGAAGACCCCG
GCTGCAAGAAGCGGTCGCTCTATGGCGTGCGGGGCTCCAAGGCGCGCTTC
TGCAGCGCACATAAGGGGCGCGACATGATCATTATCCAGCGTCGCCGCTG
CGAGCGCAGCGACTGCAGCCGCTACCCGGTCTTCGGCTTCGCCTCGACGG
ACCAGCGCGGCCGCTTTTGCCCTGTCCACAAGGAGGACGGCATGGTGGAC
CTGCAACTCCGGCGCGGGCCGCTTCCGCGCGTGGCGGTGGCGCCGCGGTT
AGCGCAGCCACACGGCTCCGGGGCGTCGGCGTCAGCCGGGGCCGGCAGCG
GTGGCGCCATGCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1487:672..2184-

>mRNA_P-wetherbeei_contig1487.1.1 ID=mRNA_P-wetherbeei_contig1487.1.1|Name=mRNA_P-wetherbeei_contig1487.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=966bp|location=Sequence derived from alignment at P-wetherbeei_contig1487:672..2184- (Phaeothamnion wetherbeei SAG_119_79)
ATTTGTTTAAGAAATACAAAAGAAAAATTCAGGAGAGGAGCGAGCAAATA
CACAGCCACATTGGTGCCAGAAACGAACGAAATGAATATGTTGAGCTTCG
CTACGGGATCTAATGAAATGACAGATGGTTCGGAAGAGGGAGCGAGCAGC
AGCAGGAGGCACCCTCGGAAAGAGGGAAGGCAAACAAAGCACCGACAGTG
TGAGGACGACAACTGCTTCGTGCAGCCGAGCTATGCGTTTGAGGGGCAAA
AGCCGCGATACTGCGTCGCGCACAAGGCGCCGGGCATGGTGGACGTGCAG
CACCGGCGTTGCGAGACGCCAAGTTGCGCCAAGCAGCCACACTTTGCCAA
CGACGGCGAGCGTGCCCGCTACTGCTCCGCGCACAAGCAGCCTGGCATGA
TCAACGTGCAGAATCGCCGCTGTGGCGAGTTCAAGTGCACGCGGGAGCCC
ATTTACGCGGTCCCGGGCGAGCGTGCCAAGTACTGCAGCAGCCATAAGAC
GGATGGCATGATCAACGTCAAATCGCGGCGCTGCGAGGCGCCCGGTTGCA
CGCGCCACTCGTTGTACGCCGTGGAGGGCGCCAAGGCGCGCTTCTGCAGC
CACCATAAGGCGGAGGGGATGATCGACGTTCAAAGCCGCAAGTGCGAAGA
CCCCGGCTGCAAGAAGCGGTCGCTCTATGGCGTGCGGGGCTCCAAGGCGC
GCTTCTGCAGCGCACATAAGGGGCGCGACATGATCATTATCCAGCGTCGC
CGCTGCGAGCGCAGCGACTGCAGCCGCTACCCGGTCTTCGGCTTCGCCTC
GACGGACCAGCGCGGCCGCTTTTGCCCTGTCCACAAGGAGGACGGCATGG
TGGACCTGCAACTCCGGCGCGGGCCGCTTCCGCGCGTGGCGGTGGCGCCG
CGGTTAGCGCAGCCACACGGCTCCGGGGCGTCGGCGTCAGCCGGGGCCGG
CAGCGGTGGCGCCATG
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