mRNA_P-wetherbeei_contig14862.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14862.1.1
Unique NamemRNA_P-wetherbeei_contig14862.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: D8LQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ4_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.030e-50
Identity = 89/151 (58.94%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 QHLQNERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQ+ER D E+ +SRLP   +  +QE PNPPL+    M ++LAR+ +      +         S V YR+++E  +S LVD LG CERI+ TPVPR YSRHTSRFLT Y  TLPVVLVPHTELFTAP+V AVCWGL SIEEIAY IEQPF
Sbjct:  131 QHLQDERDDAEMDWSRLPEGTVARLQEDPNPPLYCCQIMMEILARACSEGGAAQSPGGRVPDYTS-VMYRVQIEEGLSFLVDALGKCERIVTTPVPRGYSRHTSRFLTVYGFTLPVVLVPHTELFTAPVVAAVCWGLFSIEEIAYFIEQPF 280          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A6H5KGP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP9_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 8.170e-48
Identity = 89/151 (58.94%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 QHLQNERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQ+ER D E+ +SRLP   +  +QE PNPPL+    M ++LAR+ +      +         S V YR+++E  +S LVD LG CERIL TPVPR YSRHTSRFLT Y  TLP+VLVPHTELFTAP+V AVCWGL SIEEIAY IEQPF
Sbjct:  228 QHLQDERNDAEMDWSRLPEITVARLQEDPNPPLYCCQIMMEILARACSEGKAAQSPGGRVPDFTS-VMYRVQIEEGLSFLVDALGKCERILTTPVPRGYSRHTSRFLTVYGFTLPLVLVPHTELFTAPVVAAVCWGLFSIEEIAYFIEQPF 377          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A836CJD6_9STRA (Bestrophin, RFP-TM, chloride channel-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJD6_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.730e-40
Identity = 79/151 (52.32%), Postives = 100/151 (66.23%), Query Frame = 1
Query:    1 QHLQNERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQ+ R D E  +  LP  E+  +  +PNPPL A  RM+QV+  +                  ++V YR+++E ++  LVD+LGMCERIL TPVPRSYSRHTSRFLT Y  TLP+VLV HT  +TA +VG +CWGL+SIE IAY IEQPF
Sbjct:  379 QHLQDTRDDTEFKWLALPESELELLLSNPNPPLMACERMTQVIQLAYGTCGGSGVNGGRCREDDTSVAYRLQMEVEVGKLVDFLGMCERILTTPVPRSYSRHTSRFLTVYLFTLPMVLVGHTGYWTAAVVGLICWGLLSIEGIAYYIEQPF 529          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: H6WBA7_VAULI (Uncharacterized protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WBA7_VAULI)

HSP 1 Score: 145 bits (365), Expect = 5.150e-39
Identity = 82/153 (53.59%), Postives = 101/153 (66.01%), Query Frame = 1
Query:    1 QHLQNERVDEEL-WY-SRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQN R DEEL W  +RLP  E  ++Q +PNPPL    RMSQ+L          T        + + V+YRI++E  I+ L D +G+CERIL TPVPRSYSRHTSR LT + LTLP+VLVPHTE  T  +V  + WG++SIE IAY IEQPF
Sbjct:  184 QHLQNTRNDEELDWLKARLPKYEFENIQSNPNPPLLVLQRMSQILG---------TLFPPSSKPSQAKVFYRIKIEECINLLSDCVGLCERILNTPVPRSYSRHTSRLLTVFLLTLPIVLVPHTEFGTPLVVLLMGWGMLSIEGIAYLIEQPF 327          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A7S2V524_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V524_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.310e-29
Identity = 72/152 (47.37%), Postives = 93/152 (61.18%), Query Frame = 1
Query:    1 QHLQNER-VDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQN+  ++E   +S L +EE++ +    NPPL    RM +VLA +  +R  +TT             YR  L+ +I+ L+D+LGMCERI  TPVP SYSRHTSRFLT Y  TLP VLV      T  +V  +CWGL SIEEI + IE+PF
Sbjct:  187 QHLQNDPDLNEVKAFSTLTSEELSTLVLDANPPLRVCQRMGEVLALNYEDRDDITTFN-----------YRTYLDNEITKLIDFLGMCERIKLTPVPLSYSRHTSRFLTLYMATLPFVLVNIAGNMTPFVVLGMCWGLFSIEEIGHYIEEPF 327          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A7S2V5N3_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5N3_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.430e-28
Identity = 69/152 (45.39%), Postives = 87/152 (57.24%), Query Frame = 1
Query:    1 QHLQ-NERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQ +  VDE   +S L  EE+  +    NPPL    RM +VLA +  +R  +            A  YR  LE +I+  +D++GMCERI  TPVP SYSRHTSRFLT Y  TLP VL       T  +V  +CWGL SIE+I + IE+PF
Sbjct:  184 QHLQCDPDVDEVAAFSTLSREELESLCNDANPPLRVAQRMGEVLALNFQDRDDI-----------MAFQYRTYLEGEITKFIDFMGMCERIKLTPVPLSYSRHTSRFLTLYMATLPFVLTKFCGNLTPVVVLGMCWGLFSIEQIGHYIEEPF 324          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: W7TTZ2_9STRA (Bestrophin-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTZ2_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.520e-28
Identity = 66/150 (44.00%), Postives = 92/150 (61.33%), Query Frame = 1
Query:    4 HLQNERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            HLQ   V  EL  + LP+ E   ++    PP    ++++ ++  ++++              A + +Y + LE+ +  LV+ LGM ERIL TPVP SYSRHTSRFL+ Y LTLP VLV   E+FTAP++G VCWGL SIEEI + IE+PF
Sbjct:  279 HLQRNIVSTEL-ETLLPSWEADQVRMDTCPPALVCMKLTYLINEAVSHN------------EARSDFYALYLEQLVGDLVNCLGMAERILLTPVPASYSRHTSRFLSLYTLTLPFVLVHQLEIFTAPVLGIVCWGLFSIEEIGHLIEEPF 415          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: M2Y919_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y919_GALSU)

HSP 1 Score: 107 bits (268), Expect = 4.270e-25
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:   55 AEEITHMQEHPNPPLFATLRMSQVLARSMANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            A+EI H    PNPPLF   ++S  +  +      V          +  V  R ++E Q+SSL++ L  CERI+ TPVP  YSRHTSRFL+ +C T P+++V H +  T P+   VCW L +IEEI + IE PF
Sbjct:  211 ADEIVHS---PNPPLFVLFQLSMQIKAAFRETTNV----------SDWVVQRAKMEWQLSSLMEVLSGCERIITTPVPLGYSRHTSRFLSLWCFTFPLLVVSHFKFLTVPVTAFVCWSLFAIEEIGHVIEDPF 330          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A7S1JXH1_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1JXH1_9ALVE)

HSP 1 Score: 101 bits (251), Expect = 9.520e-24
Identity = 50/81 (61.73%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  211 IELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            I LE  I  L + LG CERI+ TPVP SYSRHTSRFLT YCLTLPVVLV   +  T P+V  +CWG  +IEEI + IE PF
Sbjct:   14 IWLENIIGHLSEALGGCERIMKTPVPLSYSRHTSRFLTLYCLTLPVVLVQSLQWMTIPVVTFMCWGFKAIEEIGHFIEDPF 94          
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Match: A0A0G4EJC8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJC8_VITBC)

HSP 1 Score: 103 bits (258), Expect = 2.700e-23
Identity = 69/155 (44.52%), Postives = 83/155 (53.55%), Query Frame = 1
Query:    1 QHLQNERVDE---ELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSM-ANRATVTTTAXXXXXAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYSRHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQPF 453
            QHLQ   VD      W +   AE +  ++   NPPL     MS     +M  +R T  T           +W    LE  I  L + LG CERI+ TPVP SYSRHTSRFLT YCLTLPVVLV   +  T P+V  +CWG  +IEEI + IE PF
Sbjct:  176 QHLQGGEVDMAEVSRWITPNDAEALRQVR---NPPLLICKLMSGTCHEAMEVSRDTKPT-------ERQLIW----LENIIGHLSEALGGCERIMKTPVPLSYSRHTSRFLTLYCLTLPVVLVQSLQWMTIPVVTFMCWGFKAIEEIGHFIEDPF 316          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14862.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQQ4_ECTSI2.030e-5058.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGP9_9PHAE8.170e-4858.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJD6_9STRA1.730e-4052.32Bestrophin, RFP-TM, chloride channel-domain-contai... [more]
H6WBA7_VAULI5.150e-3953.59Uncharacterized protein n=1 Tax=Vaucheria litorea ... [more]
A0A7S2V524_9STRA1.310e-2947.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2V5N3_9STRA2.430e-2845.39Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
W7TTZ2_9STRA2.520e-2844.00Bestrophin-like protein n=1 Tax=Nannochloropsis ga... [more]
M2Y919_GALSU4.270e-2542.11Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S1JXH1_9ALVE9.520e-2461.73Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A0G4EJC8_VITBC2.700e-2344.52Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14862contigP-wetherbeei_contig14862:202..1434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQQ4
PFAMsBestrophin
Model size453
Max annot lvl2759|Eukaryota
KEGG koko:K08994
KEGG TC1.A.46.2
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.32e-51
EggNOG OGs2CY4M@1|root,2S20F@2759|Eukaryota
DescriptionBestrophin, RFP-TM, chloride channel
Cds size453
COG categoryS
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.8688374-CDS-P-wetherbeei_contig14862:201..3961683186035.8688374-CDS-P-wetherbeei_contig14862:201..396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14862 202..396 +
1683186035.8813598-CDS-P-wetherbeei_contig14862:576..6341683186035.8813598-CDS-P-wetherbeei_contig14862:576..634Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14862 577..634 +
1683186035.8979695-CDS-P-wetherbeei_contig14862:921..10751683186035.8979695-CDS-P-wetherbeei_contig14862:921..1075Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14862 922..1075 +
1683186035.9075687-CDS-P-wetherbeei_contig14862:1388..14341683186035.9075687-CDS-P-wetherbeei_contig14862:1388..1434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14862 1389..1434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14862.1.1prot_P-wetherbeei_contig14862.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14862 202..1434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14862.1.1

>prot_P-wetherbeei_contig14862.1.1 ID=prot_P-wetherbeei_contig14862.1.1|Name=mRNA_P-wetherbeei_contig14862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=151bp
QHLQNERVDEELWYSRLPAEEITHMQEHPNPPLFATLRMSQVLARSMANR
ATVTTTAATSAAAASAVWYRIELERQISSLVDYLGMCERILGTPVPRSYS
RHTSRFLTFYCLTLPVVLVPHTELFTAPIVGAVCWGLMSIEEIAYTIEQP
F
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mRNA from alignment at P-wetherbeei_contig14862:202..1434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14862.1.1 ID=mRNA_P-wetherbeei_contig14862.1.1|Name=mRNA_P-wetherbeei_contig14862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1233bp|location=Sequence derived from alignment at P-wetherbeei_contig14862:202..1434+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCACTTGCAAAACGAGCGCGTGGACGAAGAGTTGTGGTACTCCCGCTT GCCCGCTGAGGAGATCACCCACATGCAGGAACATCCCAACCCGCCGCTTT TTGCCACGCTGCGCATGTCGCAAGTCCTGGCCCGCTCCATGGCGAACCGC GCCACCGTCACCACAACCGCCGCCACTTCTGCTGCCGCCGCTTCTGTCGC TGCTTTCGCTGTGGGAGGAGCCGCCGTGAGCAACCCCCACGGGCACATGG TCGGCGAGCCTGCGGCTGCCCTTGCCGCGGCTGATGGCAGCAGTAACGAT GGCGACAGCGGCGGCGGCGGCAGCAGCGGCAATTTTGTTGTTGGGAGCCC GGCGGCAGCGCTGGAGTCGGCAGAGGCGGTGTGGTACCGCATTGAGCTTG AGCGGCAAATCAGCAGCCTCGTCGACTACCTTGGTAAGCTCAACATCGCC TTGGTCGCTGTTGCGTGGACGATTCCGTCCTTGGCCGGAAAACAGTTGTT TTTCTTACATTTTAGCGTTGGGCCTCTTTTCTAGCCCGAGTATTGCGCTC CTGCTTGATGTATCTTAAATCAGGTGCCTTGAAGGCACTTTCCCGTTTGC ACGAAAGGCGGCGCTTCTTTGGGAGTGCAACTTTCGTTTTGTGTAACCGC TGAGACACGTCGCCTATTTCTAACCTCCCATGGCCCGGGCCATCCTCGCT CATCCGGGAACCCCCAAAAGGCATGTGCGAGCGCATCCTGGGCACGCCGG TGCCGCGGAGCTACAGCCGCCACACGTCGCGCTTCCTGACCTTCTACTGC CTGACACTACCCGTGGTGTTAGTGCCCCATACGGAGCTCTTTACGGCGCC CATCGTCGGCGCCGTCTGTTGGGGGTGAGCATTTTGCAGTGCCTGGAGGC GAATATATCTCACTCGCTTCGTGAGATACTATTTGCTGCCTTTTTATAGT GACTTCTTTTCCCGAAGTTGGATGAACTTTGCGAGTTCCATCGGTGGCAC AAGAATAACTTTCTACCATTCCGGCATATTCTTTTGATTTGCGCTCTTGA AAGCTGCAGTTGCCACTCTTTTCCGGCTATCTCCTGGCTCTCGTCGCTCC TGATTTTTGGTCTCACTGGCTTTCCTCGCCTTTCCTGCTCCGTTCCTCTG CCGTTCCTGCTCCCCCGGGAGTTAAAAACGGTCTCAGTTTAATGAGTATT GAAGAAATCGCCTATACCATTGAGCAACCCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14862:202..1434+

>mRNA_P-wetherbeei_contig14862.1.1 ID=mRNA_P-wetherbeei_contig14862.1.1|Name=mRNA_P-wetherbeei_contig14862.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=453bp|location=Sequence derived from alignment at P-wetherbeei_contig14862:202..1434+ (Phaeothamnion wetherbeei SAG_119_79)
CAGCACTTGCAAAACGAGCGCGTGGACGAAGAGTTGTGGTACTCCCGCTT
GCCCGCTGAGGAGATCACCCACATGCAGGAACATCCCAACCCGCCGCTTT
TTGCCACGCTGCGCATGTCGCAAGTCCTGGCCCGCTCCATGGCGAACCGC
GCCACCGTCACCACAACCGCCGCCACTTCTGCTGCCGCCGCTTCTGCGGT
GTGGTACCGCATTGAGCTTGAGCGGCAAATCAGCAGCCTCGTCGACTACC
TTGGCATGTGCGAGCGCATCCTGGGCACGCCGGTGCCGCGGAGCTACAGC
CGCCACACGTCGCGCTTCCTGACCTTCTACTGCCTGACACTACCCGTGGT
GTTAGTGCCCCATACGGAGCTCTTTACGGCGCCCATCGTCGGCGCCGTCT
GTTGGGGTTTAATGAGTATTGAAGAAATCGCCTATACCATTGAGCAACCC
TTC
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