mRNA_P-wetherbeei_contig14861.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14861.1.1
Unique NamemRNA_P-wetherbeei_contig14861.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14861.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14861contigP-wetherbeei_contig14861:2..1619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1618
Hectar predicted targeting categorymitochondrion
Exons1
Cds size1617
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.839156-CDS-P-wetherbeei_contig14861:1..16181683186035.839156-CDS-P-wetherbeei_contig14861:1..1618Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14861 2..1618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14861.1.1prot_P-wetherbeei_contig14861.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14861 2..1618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14861.1.1

>prot_P-wetherbeei_contig14861.1.1 ID=prot_P-wetherbeei_contig14861.1.1|Name=mRNA_P-wetherbeei_contig14861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=539bp
VLRSAAASVLVATPSLGAATLRRTASGLFTAILAAAEWPVGGDGVLIEVF
AAAEAAAGSLGGAAARPLAVPLLPLLLSHAAAVVNAASVPRRASTGAGAA
RGSGSGSRRKQSRRAASEPHDDDAESSSAAAATAGGLPAEAVAAALRCTA
ALLVSCEPFLPLASRLPVEALMHSGLRLLALSPGGFGRRGFAAAGGFGFV
GGAPLVCRDAHVAAAFIALAQSCLLAPLADGTRSGLLPLSIAAFRVTAGS
RSQAVAGPSRTALAVAAAILEPRAVPLQLPPAVTGQRLEPWLAECGTRDG
AGNGGGGGGGAADSSGCTKCEARRREGLSGANGEGVAGHTVGNGILYGNG
HAAMHFATAEPKDSGGYRNGVAATAPRTEVDASAFTMLRQAAAAPEVAAI
GRLADFGVATAFAASEASCEEEAAAEDEESPPAVKRRRVAAQSAGLGGNA
EAASAASHGGGSWHGLKVGEASSGGDGGGGGGGRAGPSAGAQPVARTTAA
NPTDADVAAAAIAAAETTVAAEPPAAAAPGSRGDACAIG
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mRNA from alignment at P-wetherbeei_contig14861:2..1619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14861.1.1 ID=mRNA_P-wetherbeei_contig14861.1.1|Name=mRNA_P-wetherbeei_contig14861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1618bp|location=Sequence derived from alignment at P-wetherbeei_contig14861:2..1619+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTTCGGTCCGCAGCCGCCAGCGTCCTCGTCGCGACGCCGTCGCTCGG
AGCGGCCACGCTCCGCCGCACAGCCAGCGGCCTTTTCACGGCGATACTGG
CGGCAGCCGAGTGGCCTGTGGGCGGAGACGGGGTGCTGATAGAGGTGTTT
GCGGCAGCTGAGGCGGCGGCGGGGAGCCTGGGCGGCGCGGCGGCGCGGCC
GCTGGCTGTGCCGCTGCTGCCGCTGCTTCTCTCGCACGCGGCGGCCGTTG
TCAACGCCGCCAGTGTACCCCGGCGCGCTTCTACTGGCGCTGGCGCGGCC
CGCGGTAGCGGGTCTGGCAGCCGCCGCAAGCAGTCGCGGCGTGCGGCGTC
AGAACCGCACGACGACGACGCCGAGTCGTCGTCGGCGGCGGCGGCAACAG
CTGGTGGGCTGCCAGCGGAAGCTGTGGCGGCTGCGCTCCGCTGCACGGCC
GCCCTCCTCGTCTCTTGCGAGCCATTCCTGCCGCTGGCGTCGCGGCTGCC
TGTCGAGGCATTGATGCACTCGGGCCTCCGCCTGCTCGCGCTCTCCCCGG
GGGGCTTTGGACGGCGCGGCTTTGCCGCAGCCGGCGGTTTCGGCTTTGTC
GGCGGCGCTCCGCTCGTCTGCCGCGACGCGCACGTTGCAGCAGCTTTTAT
CGCGCTCGCCCAAAGCTGTCTTTTGGCCCCGCTGGCGGATGGGACGCGCA
GCGGGCTCCTGCCGCTGTCGATCGCAGCGTTCCGCGTCACAGCCGGCAGC
CGGTCGCAGGCGGTCGCCGGCCCGTCGCGGACGGCGCTCGCTGTGGCGGC
GGCGATTCTGGAGCCGCGGGCCGTGCCGCTGCAGCTGCCGCCGGCCGTGA
CGGGCCAGCGCCTTGAGCCGTGGCTGGCCGAATGTGGCACTCGAGATGGT
GCTGGAAACGGCGGCGGTGGCGGCGGTGGCGCTGCTGACAGCAGCGGCTG
CACGAAGTGCGAGGCCCGACGGCGGGAGGGTTTGAGTGGTGCGAATGGGG
AAGGCGTGGCAGGCCATACGGTGGGGAACGGCATCCTTTACGGCAACGGC
CACGCGGCGATGCATTTCGCCACAGCTGAGCCAAAAGACTCTGGCGGGTA
CCGCAACGGCGTAGCGGCGACGGCGCCGCGAACGGAGGTGGACGCCAGTG
CTTTCACGATGCTGCGACAGGCTGCTGCAGCACCGGAAGTCGCAGCAATC
GGGCGGCTTGCAGATTTCGGAGTGGCGACGGCTTTCGCAGCATCGGAGGC
ATCATGTGAGGAAGAAGCTGCTGCAGAAGACGAAGAAAGTCCGCCGGCGG
TAAAGCGCCGGCGAGTGGCGGCACAGTCCGCGGGGTTGGGCGGTAATGCC
GAAGCCGCTTCGGCCGCGTCACATGGTGGAGGATCGTGGCATGGCTTGAA
AGTGGGCGAAGCTAGCAGCGGTGGCGATGGCGGCGGCGGCGGCGGCGGCA
GGGCCGGGCCGTCAGCTGGGGCGCAGCCGGTAGCCAGAACTACTGCTGCC
AATCCCACTGACGCTGACGTTGCCGCTGCCGCCATCGCCGCTGCAGAGAC
GACGGTGGCTGCGGAGCCGCCAGCAGCGGCGGCACCTGGCTCTCGTGGTG
ATGCCTGCGCGATTGGTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14861:2..1619+

>mRNA_P-wetherbeei_contig14861.1.1 ID=mRNA_P-wetherbeei_contig14861.1.1|Name=mRNA_P-wetherbeei_contig14861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1617bp|location=Sequence derived from alignment at P-wetherbeei_contig14861:2..1619+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCTTCGGTCCGCAGCCGCCAGCGTCCTCGTCGCGACGCCGTCGCTCGG
AGCGGCCACGCTCCGCCGCACAGCCAGCGGCCTTTTCACGGCGATACTGG
CGGCAGCCGAGTGGCCTGTGGGCGGAGACGGGGTGCTGATAGAGGTGTTT
GCGGCAGCTGAGGCGGCGGCGGGGAGCCTGGGCGGCGCGGCGGCGCGGCC
GCTGGCTGTGCCGCTGCTGCCGCTGCTTCTCTCGCACGCGGCGGCCGTTG
TCAACGCCGCCAGTGTACCCCGGCGCGCTTCTACTGGCGCTGGCGCGGCC
CGCGGTAGCGGGTCTGGCAGCCGCCGCAAGCAGTCGCGGCGTGCGGCGTC
AGAACCGCACGACGACGACGCCGAGTCGTCGTCGGCGGCGGCGGCAACAG
CTGGTGGGCTGCCAGCGGAAGCTGTGGCGGCTGCGCTCCGCTGCACGGCC
GCCCTCCTCGTCTCTTGCGAGCCATTCCTGCCGCTGGCGTCGCGGCTGCC
TGTCGAGGCATTGATGCACTCGGGCCTCCGCCTGCTCGCGCTCTCCCCGG
GGGGCTTTGGACGGCGCGGCTTTGCCGCAGCCGGCGGTTTCGGCTTTGTC
GGCGGCGCTCCGCTCGTCTGCCGCGACGCGCACGTTGCAGCAGCTTTTAT
CGCGCTCGCCCAAAGCTGTCTTTTGGCCCCGCTGGCGGATGGGACGCGCA
GCGGGCTCCTGCCGCTGTCGATCGCAGCGTTCCGCGTCACAGCCGGCAGC
CGGTCGCAGGCGGTCGCCGGCCCGTCGCGGACGGCGCTCGCTGTGGCGGC
GGCGATTCTGGAGCCGCGGGCCGTGCCGCTGCAGCTGCCGCCGGCCGTGA
CGGGCCAGCGCCTTGAGCCGTGGCTGGCCGAATGTGGCACTCGAGATGGT
GCTGGAAACGGCGGCGGTGGCGGCGGTGGCGCTGCTGACAGCAGCGGCTG
CACGAAGTGCGAGGCCCGACGGCGGGAGGGTTTGAGTGGTGCGAATGGGG
AAGGCGTGGCAGGCCATACGGTGGGGAACGGCATCCTTTACGGCAACGGC
CACGCGGCGATGCATTTCGCCACAGCTGAGCCAAAAGACTCTGGCGGGTA
CCGCAACGGCGTAGCGGCGACGGCGCCGCGAACGGAGGTGGACGCCAGTG
CTTTCACGATGCTGCGACAGGCTGCTGCAGCACCGGAAGTCGCAGCAATC
GGGCGGCTTGCAGATTTCGGAGTGGCGACGGCTTTCGCAGCATCGGAGGC
ATCATGTGAGGAAGAAGCTGCTGCAGAAGACGAAGAAAGTCCGCCGGCGG
TAAAGCGCCGGCGAGTGGCGGCACAGTCCGCGGGGTTGGGCGGTAATGCC
GAAGCCGCTTCGGCCGCGTCACATGGTGGAGGATCGTGGCATGGCTTGAA
AGTGGGCGAAGCTAGCAGCGGTGGCGATGGCGGCGGCGGCGGCGGCGGCA
GGGCCGGGCCGTCAGCTGGGGCGCAGCCGGTAGCCAGAACTACTGCTGCC
AATCCCACTGACGCTGACGTTGCCGCTGCCGCCATCGCCGCTGCAGAGAC
GACGGTGGCTGCGGAGCCGCCAGCAGCGGCGGCACCTGGCTCTCGTGGTG
ATGCCTGCGCGATTGGT
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