mRNA_P-wetherbeei_contig1486.3.5 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1486.3.5
Unique NamemRNA_P-wetherbeei_contig1486.3.5
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.150e-43
Identity = 145/389 (37.28%), Postives = 180/389 (46.27%), Query Frame = 1
Query:   10 QVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHR--LLMRAESSLGGLSALPT-------------------------PRHSVGEPRSPERGXXXXXXXXXXXSWRESSARL-------------------------------------------------SSQGARA---ADGSQVVAPGNGVATGC---------DEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVEDGRWMEFNDRVVTPFDPADLPRECFGG---PQE--AGGNGRVGGGAGGVRVNNAYLL 897
            +VQDK +LE +L+L VAGE L GDN Y C+KCG  VTAQRRC IK+LP TLIVHLKRFEFD+ TM R KLNHR +FP  LDMAP+T + + QR+H    L       G   A                            P    G+  + +   XXXXXXXXX +   S+A                                                    S+G R+    D   +  P  GV  G             +SS+   +AGA   S+ +G       S+  +  L  R       EY L G+VAH GT D GHYYS IR    RW+EFNDR VTP+DPA++PR+CFGG   PQE  A      GGG G +   +AYLL
Sbjct: 2827 EVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLSTMRRHKLNHRCSFPMELDMAPWTLENI-QRQHGGGRLWGGSEGRGTAEAXXXXXXXXXXXXXXXXXXXXXXXXXNVGPGFFSGDGGASQDSIXXXXXXXXXGAASPSNAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSEGPRSPPPVDRKPLWHPEGGVEAGTAXXXXXXXXXRPSSSSLPYAAGAREGSEASGAGXXXXXSTRRAETLSERT------EYRLKGIVAHQGTADHGHYYSLIRAGGDRWLEFNDRRVTPYDPANIPRDCFGGALTPQEGRALDASAAGGGGGSLHETSAYLL 3208          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.530e-41
Identity = 126/367 (34.33%), Postives = 155/367 (42.23%), Query Frame = 1
Query:   10 QVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSA----------LPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAA----------------------------------------------------DGSQVVAPGN----------------------GVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFG----LRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVEDGRWMEFNDRVVTPFDPADLPRECFGG---PQEAG 837
            +VQDK +LE +L+L VAGE L GDN Y C+KCG  VTAQRRC IK+LP TLIVHLKRFEFD+ TM R KLNHR +FP  LDMAP+T + + QR+H     +  S G  +A                    P + E             + ++S A + S  A  A                                                    DG     P +                            DE  S +    A  A E + A G            G     R  +      EY L G+VAH GT D GHYYS IR    RW+EFNDR VTP+DPA++PR+CFGG   PQE G
Sbjct: 1844 EVQDKESLEGSLQLLVAGEMLTGDNCYLCEKCGQRVTAQRRCAIKQLPSTLIVHLKRFEFDLGTMRRHKLNHRCSFPMELDMAPWTLENI-QRQHSGGRLSGGSEGRGTAEAXXXXXXXXXXXXXXXXSAPTAAEGNAGPGFFSGDSGTRQDSIAAVDSMAAVGATSQSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDGSEGPRSPPRVDRKPLWHPEXXXXXXXXXXXXXXXDERPSCSSLPHAAGAREGNEASGGXXXXXXXXXXXGRGSSTRRAETVSGRTEYRLKGIVAHQGTADHGHYYSLIRASGDRWLEFNDRRVTPYDPANIPRDCFGGALTPQEGG 2209          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A4D9CWN0_9STRA (USP domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWN0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.300e-35
Identity = 114/297 (38.38%), Postives = 156/297 (52.53%), Query Frame = 1
Query:    7 LQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGV---------AQREHRLLMRAE-SSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQ--GARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVEDG-------RWMEFNDRVVTPFDPADLPRECFGGPQEAGG 840
            + +++K +LE++L L+V+GE LAGDNKY C +CG  V A RR  ++ +P  LI+HLKRFEFD+E M + K+N R +FP  L M PY +D +          + E RL      SSL G +A    +    EP +  RG    XXXXXXX          +   GA A+  +   +  +G+ T      SS+    +G   +     G   S  ++ G      R       +Y LTGVV HTGT++SGHYYSF++ E G       RW  FND VV PFDPA +P ECFGG +   G
Sbjct:  902 VDIKNKESLEDSLALYVSGELLAGDNKYYCAECGRKVEAVRRTALQHIPPILIIHLKRFEFDLEHMIKFKVNDRCSFPLHLTMDPYMADHLLIEGAMRPPGEEEARLASSVPPSSLSGEAAAV--KGQAREPGTHRRGEKQGXXXXXXXXXXXXXXXXXAPMLGALASHLTSSFSASHGLLT-APSFTSSSSVPPSGRCLDGGRGEGGGASPWTASG----EGRH------DYELTGVVVHTGTSESGHYYSFVKKEGGEGEGEGGRWWVFNDHVVAPFDPALIPAECFGGTEAVEG 1185          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A482SHC7_9ARCH (USP domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHC7_9ARCH)

HSP 1 Score: 135 bits (340), Expect = 7.550e-32
Identity = 101/310 (32.58%), Postives = 134/310 (43.23%), Query Frame = 1
Query:    1 VLLQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPP--CEYALTGVVAHTGTTDSGHYYSFIRVEDGR--------WMEFNDRVVTPFDPADLPRECFGGPQE-AGGNGRVGGGAGGVRVNNAYLL 897
            + ++V++K TL EALEL VA E   G+NK    +    V A RRC I++LP  LI+HLKRFEFD+ETM R+K+N  ++FP  LDM PYT + +A                        H+  +P  P+                  + +   +  R  + SQ                                                 R RD  MPP   +Y+L G+VAH G  D GHYYSFI+    R        W EFNDR+V PF P  +P+ECFGG  E    +G+        R NNAYLL
Sbjct: 1950 ITVEVKNKKTLLEALELTVAEELFTGENKIEDSENNKKVDAVRRCAIRDLPPVLIIHLKRFEFDLETMNRKKVNDYMSFPFELDMFPYTEEALAS-----------------------HTPQKPAVPDASP---------------NDQKEDEAPRTDNSSQNTVK---------------------------------------------RERDQ-MPPHYYQYSLQGIVAHVGAIDRGHYYSFIKDRKPRDNSSSEDVWYEFNDRMVLPFSPDQIPKECFGGSDEITNASGQT---ITRARENNAYLL 2172          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A0D2WMI0_CAPO3 (Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2WMI0_CAPO3)

HSP 1 Score: 134 bits (336), Expect = 2.640e-31
Identity = 95/282 (33.69%), Postives = 128/282 (45.39%), Query Frame = 1
Query:   10 QVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVE-------DGRWMEFNDRVVTPFDPADLPRECFGGPQEA 834
            +V++K ++ E+L L+V GE L GDNKY C  C  +VTA++R  +  LP+TLIVHLKRFEFD+ET+ R K+N    FP  LDM PYT                  L GL+ L                             RESS  +        +G+   AP   + T               +AA +DP    ++S                   C Y L+G++ HTGT DSGHYYS+I+           RW+ FND  V  FDPA +P + FGG + A
Sbjct: 1966 EVKNKKSILESLALYVEGEMLDGDNKYFCATCSRHVTAKKRACVFSLPQTLIVHLKRFEFDMETLRRYKINDYCEFPHELDMEPYT------------------LAGLTRLE----------------------------RESSTTME-------EGTTGTAPDPSLPT---------------SAAAADPQQAQQQSNPGD---------------CHYRLSGILVHTGTADSGHYYSYIKERATPSDSTQPRWIWFNDSTVETFDPALIPSQTFGGMETA 2164          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A1X6PBX1_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PBX1_PORUM)

HSP 1 Score: 131 bits (330), Expect = 1.670e-30
Identity = 93/277 (33.57%), Postives = 127/277 (45.85%), Query Frame = 1
Query:    7 LQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQRE---HRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVEDG--RWMEFNDRVVTPFDPADLPRECFGG 822
            L V+DK ++ ++L+ +V G+ L GDNKY C +   +V A +R  +  LP TLI+HLKRFEFD +TM + K+N    FP +LDM PYT   +A+R+   H     A+ + GGL+                 G      XXXXX          S  A AAD +Q +                                                         +Y L G++ H GT DSGHYYSF++ E G  RW+ FND +  PFDPAD+PR C+GG
Sbjct: 2548 LDVKDKRSVLDSLDFYVQGDVLDGDNKYFCSQYDQHVVALKRTCLGALPHTLILHLKRFEFDFDTMRKVKVNDYCEFPAVLDMGPYTKRSLARRDASSHAGFGAAQRNGGGLAG---------------DGAGAAHVXXXXXXXXXXXXXXXSGAADAADDTQGL---------------------------------------------------------QYRLVGMLVHAGTADSGHYYSFVQ-ERGTDRWIHFNDTITEPFDPADIPRTCYGG 2751          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A3F2RUL0_9STRA (USP domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RUL0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 1.820e-29
Identity = 90/275 (32.73%), Postives = 126/275 (45.82%), Query Frame = 1
Query:    7 LQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVE-DGRWMEFNDRVVTPFDPADLPRECFGGPQ 828
            LQ++ K ++EE+L  FV GE + GDNK  C+ C     A RR     LP  L++HLKRF+ D  T    KLN+R +FP  L M PYT  G+ ++E R  M+                SV E  + +                 + A  SS        S V++P + +       ASSA   S+     S+             G    +S   + P  EY L G++ H+G    GHYYSFI      +W +++D  VTPFDPA++  ECFGG Q
Sbjct: 1215 LQIRGKESIEESLTAFVEGELMDGDNKVECELCETKKAAVRRTCFGSLPNLLVLHLKRFDLDYTTFETVKLNNRCSFPMRLSMKPYTKAGIEEQEARSNMQQNRE----------ETSVDEDMASDESSDSDEFMADVNGDTSAIAASSS--------SPVISPRSSIKL-----ASSASPRSSNVGKNSE-------------GDDKSKSSAKSDPNYEYRLKGILVHSGVAQGGHYYSFIYDHMSEKWFKYDDEDVTPFDPANIEAECFGGVQ 1453          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A397UDV5_9GLOM (Ubiquitinyl hydrolase 1 n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397UDV5_9GLOM)

HSP 1 Score: 128 bits (322), Expect = 1.870e-29
Identity = 83/282 (29.43%), Postives = 114/282 (40.43%), Query Frame = 1
Query:   10 QVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVE---------DGRWMEFNDRVVTPFDPADLPRECFGGPQ 828
            +V++K  +EE+LEL+V GE L GDN+Y C KC   V A +R  IK LP+ LI+HLKRF+FD+E + R K+N    FPT ++M PYT D + ++E   L  ++  +G  S                                                                                                             EY L GV+ HTGT DSGHYYSFI+           + RW +FND  V  FDP D+P++C+GGP+
Sbjct: 1886 EVKNKKNVEESLELYVEGELLDGDNQYFCAKCNKSVDAIKRSCIKTLPKNLIMHLKRFDFDMELLKRVKINELFEFPTHINMEPYTLDYLIRKESGQLDDSKVDVGNKSQF-----------------------------------------------------------------------------------------------------------EYELVGVLVHTGTADSGHYYSFIKERKSLYDENDFERRWYQFNDSTVEVFDPKDIPKQCYGGPE 2060          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: F4PHI7_CAVFA (Ubiquitinyl hydrolase 1 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PHI7_CAVFA)

HSP 1 Score: 126 bits (316), Expect = 1.150e-28
Identity = 94/309 (30.42%), Postives = 140/309 (45.31%), Query Frame = 1
Query:    1 VLLQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPC--EYALTGVVAHTGTTDSGHYYSFIRVEDG--------RWMEFNDRVVTPFDPADLPRECFGGPQEAGGNGRVGGGAGGVRVNNAYLL 897
            V ++V++K  + E+L+LFV  E L GDNKY C +C   V    R  +K+LP TLI+H KRFEFD++ M R K+N  L FP  LDMAPYT + + ++E                      ++ + +  ++ XXXXXXX    S + ++A L  +                                                          +S     P    +Y L+G++ H+GT DSGHYYSFI+  +         RW++FND++   F+P D+ + CFGG  +    G +G      R NNAY+L
Sbjct: 1501 VSVEVKNKRDILESLQLFVESETLDGDNKYFCSQCSQKVKCLMRRCVKQLPNTLILHNKRFEFDLDLMRRTKINDALRFPMTLDMAPYTKEYLERKE----------------------AIEKEKEKQQXXXXXXXXGESGSTQPAAAELQEE---------------------------------------------------------KKSLPQMKPASYYQYELSGILVHSGTADSGHYYSFIKEREPHPASGQQRRWIQFNDQLTEIFNPEDIAKACFGGYDQPNDKGIMGRPT--PRYNNAYML 1728          
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Match: A0A397JP97_9GLOM (Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JP97_9GLOM)

HSP 1 Score: 125 bits (314), Expect = 2.140e-28
Identity = 87/282 (30.85%), Postives = 115/282 (40.78%), Query Frame = 1
Query:   10 QVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKELPRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRLLMRAESSLGGLSALPTPRHSVGEPRSPERGXXXXXXXXXXXSWRESSARLSSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARRSRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVE-----DG----RWMEFNDRVVTPFDPADLPRECFGGPQ 828
            +V++K T+EE+LEL+V GE L GDN+Y C KC   V A +R  IK LP+ LI+HLKRF+FD+E + R K+N    FPT ++M PYT D +  +E   +   ++ +                                                  D  Q                                                           EY L GV+ HTGT DSGHYYSFIR       DG    RW +FND  V  FDP D+P++CFGGP+
Sbjct: 1881 EVKNKKTVEESLELYVEGELLDGDNQYFCAKCEKSVEAIKRSCIKTLPKNLIMHLKRFDFDMELLKRVKINDLFEFPTHINMEPYTLDYLIGKESGQIDEFKTEI--------------------------------------------------DKDQF----------------------------------------------------------EYELVGVLVHTGTADSGHYYSFIRERKPFHNDGHNERRWYQFNDSTVEIFDPKDIPKQCFGGPE 2054          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1486.3.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LU88_ECTSI7.150e-4337.28Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE1.530e-4134.33USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A4D9CWN0_9STRA1.300e-3538.38USP domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A482SHC7_9ARCH7.550e-3232.58USP domain-containing protein n=1 Tax=archaeon Tax... [more]
A0A0D2WMI0_CAPO32.640e-3133.69Ubiquitinyl hydrolase 1 n=1 Tax=Capsaspora owczarz... [more]
A0A1X6PBX1_PORUM1.670e-3033.57Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A3F2RUL0_9STRA1.820e-2932.73USP domain-containing protein n=2 Tax=Phytophthora... [more]
A0A397UDV5_9GLOM1.870e-2929.43Ubiquitinyl hydrolase 1 n=2 Tax=Gigaspora TaxID=48... [more]
F4PHI7_CAVFA1.150e-2830.42Ubiquitinyl hydrolase 1 n=1 Tax=Cavenderia fascicu... [more]
A0A397JP97_9GLOM2.140e-2830.85Ubiquitinyl hydrolase 1 n=1 Tax=Diversispora epiga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1486contigP-wetherbeei_contig1486:5869..7035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LU88
PFAMsUCH
Model size897
Max annot lvl2759|Eukaryota
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.17e-43
EggNOG OGsCOG5077@1|root,KOG1866@2759|Eukaryota
EC3.4.19.12
Descriptionubiquitinyl hydrolase activity
Cds size897
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.7941968-CDS-P-wetherbeei_contig1486:5868..66211683186035.7941968-CDS-P-wetherbeei_contig1486:5868..6621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1486 5869..6621 -
1683186035.805367-CDS-P-wetherbeei_contig1486:6891..70351683186035.805367-CDS-P-wetherbeei_contig1486:6891..7035Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1486 6892..7035 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1486.3.5prot_P-wetherbeei_contig1486.3.5Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1486 5869..7035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1486.3.5

>prot_P-wetherbeei_contig1486.3.5 ID=prot_P-wetherbeei_contig1486.3.5|Name=mRNA_P-wetherbeei_contig1486.3.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=299bp
VLLQVQDKATLEEALELFVAGEQLAGDNKYRCDKCGDYVTAQRRCTIKEL
PRTLIVHLKRFEFDVETMTRRKLNHRLAFPTLLDMAPYTSDGVAQREHRL
LMRAESSLGGLSALPTPRHSVGEPRSPERGGGGGGGGGRSSSWRESSARL
SSQGARAADGSQVVAPGNGVATGCDEGASSAEATSAGAAAESDPAGGARR
SRLSSLGSFGLRSRDAAMPPCEYALTGVVAHTGTTDSGHYYSFIRVEDGR
WMEFNDRVVTPFDPADLPRECFGGPQEAGGNGRVGGGAGGVRVNNAYLL
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mRNA from alignment at P-wetherbeei_contig1486:5869..7035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1486.3.5 ID=mRNA_P-wetherbeei_contig1486.3.5|Name=mRNA_P-wetherbeei_contig1486.3.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-wetherbeei_contig1486:5869..7035- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTGCTTCAGGTACAAGACAAAGCGACGCTAGAGGAGGCGCTCGAGCT GTTTGTGGCCGGAGAGCAGCTCGCGGGCGACAACAAGTACCGCTGCGACA AGTGTGGTGACTACGTCACCGCCCAGCGGCGCTGTACCATCAAGGTGAGT GAGCTGAGCGCGAGAGGCTTTCTGGCGTCCTCCCGAGGGCGGGATTGGAC GGGTTGCGCTGAGGCACTCGCGCGCCGTCTCGTTTGATGACCTCACATCA CGTGCTGGAAAGGTGTAAGAAGCAACGTTGCTGCTGCGAGGGCGGCCATT AATCGCCAGATGCCGTTTCTCCTGCCGCCACTGCTTCACATCTCAATCCG CGAATATCATGTTGATAACCGCCTTGCTCTGTTCTCTGCTCTTTTGACTT CTGAGTTGCTGCAGGAGCTGCCCCGGACGCTGATCGTGCACCTCAAACGC TTCGAGTTCGACGTCGAGACCATGACGCGCCGCAAGCTCAACCACCGCCT CGCTTTCCCGACGCTGCTCGACATGGCGCCCTACACGAGCGATGGCGTTG CCCAGCGCGAGCACCGCCTCCTCATGAGGGCGGAGAGCTCGCTGGGGGGC CTCTCAGCGCTGCCGACGCCTCGTCACAGCGTTGGGGAGCCGCGCAGCCC CGAGCGAGGTGGCGGCGGCGGCGGCGGCGGCGGAAGGAGCAGCTCGTGGA GAGAGAGTAGCGCGCGGCTCTCTTCGCAGGGCGCAAGGGCCGCCGATGGG TCGCAAGTTGTTGCGCCTGGAAACGGTGTGGCGACAGGCTGCGACGAGGG GGCCAGTTCTGCAGAAGCGACTTCGGCGGGGGCGGCGGCAGAGTCCGACC CGGCCGGCGGCGCCAGGCGGAGTCGCTTGAGCAGCCTCGGGAGCTTTGGG CTGCGCTCGCGGGACGCGGCGATGCCGCCGTGCGAGTACGCGCTGACGGG CGTGGTGGCGCACACCGGCACGACGGACAGCGGCCACTACTACAGCTTCA TTCGCGTGGAAGATGGCCGCTGGATGGAGTTCAACGACCGGGTCGTAACG CCGTTCGACCCCGCGGACCTGCCCCGGGAGTGCTTCGGAGGGCCACAGGA GGCTGGTGGGAACGGCCGCGTCGGGGGCGGCGCCGGCGGGGTGCGGGTGA ACAATGCTTACCTTCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1486:5869..7035-

>mRNA_P-wetherbeei_contig1486.3.5 ID=mRNA_P-wetherbeei_contig1486.3.5|Name=mRNA_P-wetherbeei_contig1486.3.5|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=897bp|location=Sequence derived from alignment at P-wetherbeei_contig1486:5869..7035- (Phaeothamnion wetherbeei SAG_119_79)
GTCTTGCTTCAGGTACAAGACAAAGCGACGCTAGAGGAGGCGCTCGAGCT
GTTTGTGGCCGGAGAGCAGCTCGCGGGCGACAACAAGTACCGCTGCGACA
AGTGTGGTGACTACGTCACCGCCCAGCGGCGCTGTACCATCAAGGAGCTG
CCCCGGACGCTGATCGTGCACCTCAAACGCTTCGAGTTCGACGTCGAGAC
CATGACGCGCCGCAAGCTCAACCACCGCCTCGCTTTCCCGACGCTGCTCG
ACATGGCGCCCTACACGAGCGATGGCGTTGCCCAGCGCGAGCACCGCCTC
CTCATGAGGGCGGAGAGCTCGCTGGGGGGCCTCTCAGCGCTGCCGACGCC
TCGTCACAGCGTTGGGGAGCCGCGCAGCCCCGAGCGAGGTGGCGGCGGCG
GCGGCGGCGGCGGAAGGAGCAGCTCGTGGAGAGAGAGTAGCGCGCGGCTC
TCTTCGCAGGGCGCAAGGGCCGCCGATGGGTCGCAAGTTGTTGCGCCTGG
AAACGGTGTGGCGACAGGCTGCGACGAGGGGGCCAGTTCTGCAGAAGCGA
CTTCGGCGGGGGCGGCGGCAGAGTCCGACCCGGCCGGCGGCGCCAGGCGG
AGTCGCTTGAGCAGCCTCGGGAGCTTTGGGCTGCGCTCGCGGGACGCGGC
GATGCCGCCGTGCGAGTACGCGCTGACGGGCGTGGTGGCGCACACCGGCA
CGACGGACAGCGGCCACTACTACAGCTTCATTCGCGTGGAAGATGGCCGC
TGGATGGAGTTCAACGACCGGGTCGTAACGCCGTTCGACCCCGCGGACCT
GCCCCGGGAGTGCTTCGGAGGGCCACAGGAGGCTGGTGGGAACGGCCGCG
TCGGGGGCGGCGCCGGCGGGGTGCGGGTGAACAATGCTTACCTTCTG
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