mRNA_P-wetherbeei_contig1486.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1486.1.1
Unique NamemRNA_P-wetherbeei_contig1486.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.380e-22
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:  499 MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKVS 666
            M AKALQNSHPK + KGG  CR C NQ GII+KYGINMCRQCFR YA DIGFHK+S
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.000e-18
Identity = 44/75 (58.67%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:  442 LPPSYVLLLFSLSFKSFAAMPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKVS 666
            LPP   L L +        M +KAL NSHPK   KGGRHCR C NQ G+IRKYG+ MCRQCFR YA +IGF K S
Sbjct:   32 LPPPVALHLLT--------MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 1.160e-17
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  499 MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHK 660
            M  +A+ NSHPK + KGGR CR C NQ GIIRKY +N+CRQCFR YANDIGF K
Sbjct:    1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A1X2J2J3_9FUNG (40S ribosomal protein S29 n=5 Tax=Mucorales TaxID=4827 RepID=A0A1X2J2J3_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.450e-17
Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:  520 NSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKVSE 669
            NS PK + KG R CR C +Q G+IRKY +N+CRQCFR YANDIGFHKV E
Sbjct:    8 NSRPKTYGKGSRQCRVCAHQAGLIRKYNLNICRQCFREYANDIGFHKVRE 57
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A1Y2BNQ1_9FUNG (40S ribosomal protein S29 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2BNQ1_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 2.330e-17
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:  499 MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHK 660
            M   A+ NSHPK +SKGGR CR C +Q G+IRKYG+N+CRQCFR YA DIGF K
Sbjct:    1 MAHAAVWNSHPKNNSKGGRQCRVCSHQAGLIRKYGLNLCRQCFREYAADIGFVK 54
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A1X2GL87_9FUNG (40S ribosomal protein S29 n=3 Tax=Mucorales TaxID=4827 RepID=A0A1X2GL87_9FUNG)

HSP 1 Score: 85.1 bits (209), Expect = 2.860e-17
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:  520 NSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKVS 666
            NSHP+ + KG R CR C ++ G+IRKY +N+CRQCFR YANDIGFHKVS
Sbjct:    8 NSHPRGYGKGSRQCRVCAHRAGLIRKYNLNICRQCFREYANDIGFHKVS 56
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A061RP44_9CHLO (Small subunit ribosomal protein S29e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RP44_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 3.230e-17
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:  520 NSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKV 663
            NSHPK + KG R CR CGNQ G+IRKYG+N+CRQCFR YA DIGF K+
Sbjct:    8 NSHPKGYGKGSRSCRVCGNQHGLIRKYGLNICRQCFREYAKDIGFQKM 55
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A9S9B9_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S9B9_PHYPA)

HSP 1 Score: 85.1 bits (209), Expect = 4.270e-17
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  499 MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKVSER 672
            M  +A+ NSHPK +  G R CR CGN CG+IRKYGIN CRQCFR Y+ DIGF KV  R
Sbjct:    1 MGHEAVWNSHPKGYGPGSRTCRVCGNSCGMIRKYGINTCRQCFRIYSKDIGFVKVLSR 58
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A0A0D2K9S9_9CHLO (40S ribosomal protein S29 n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2K9S9_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 4.470e-17
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:  520 NSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHK 660
            NSHPK +SKGGR CR CGN  GIIRKYG+N+CRQCFR YA DIGF K
Sbjct:    8 NSHPKDYSKGGRTCRVCGNGGGIIRKYGLNICRQCFRDYAKDIGFVK 54
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BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Match: A9SH93_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SH93_PHYPA)

HSP 1 Score: 84.0 bits (206), Expect = 8.420e-17
Identity = 36/55 (65.45%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:  499 MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDIGFHKV 663
            M  +A+ NSHPK +  G R CR CGN CG+IRKYGIN CRQCFR Y+ DIGF KV
Sbjct:    1 MGHEAVWNSHPKGYGPGSRTCRVCGNSCGMIRKYGINTCRQCFRIYSKDIGFVKV 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1486.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKD0_9STRA2.380e-2276.79Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
D7FJK2_ECTSI2.000e-1858.67Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A7J7QR56_9CHLO1.160e-1768.5240S ribosomal protein S29 (Fragment) n=1 Tax=Scene... [more]
A0A1X2J2J3_9FUNG1.450e-1768.0040S ribosomal protein S29 n=5 Tax=Mucorales TaxID=... [more]
A0A1Y2BNQ1_9FUNG2.330e-1766.6740S ribosomal protein S29 n=1 Tax=Rhizoclosmatium ... [more]
A0A1X2GL87_9FUNG2.860e-1767.3540S ribosomal protein S29 n=3 Tax=Mucorales TaxID=... [more]
A0A061RP44_9CHLO3.230e-1770.83Small subunit ribosomal protein S29e n=1 Tax=Tetra... [more]
A9S9B9_PHYPA4.270e-1763.79Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A0D2K9S9_9CHLO4.470e-1776.6040S ribosomal protein S29 n=1 Tax=Monoraphidium ne... [more]
A9SH93_PHYPA8.420e-1765.45Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1486contigP-wetherbeei_contig1486:568..1678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJK2
Preferred namerps29
PFAMsRibosomal_S14
Model size1111
Max annot lvl2759|Eukaryota
KEGG koko:K02980,ko:K20308
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue7.56e-23
EggNOG OGsCOG0199@1|root,KOG3506@2759|Eukaryota
Ec32 ortholog descriptionsimilar to 40S ribosomal protein S29
Ec32 orthologEc-04_006420.1
Descriptionribosomal protein
Cds size201
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.7127836-UTR-P-wetherbeei_contig1486:567..10651683186035.7127836-UTR-P-wetherbeei_contig1486:567..1065Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1486 568..1065 +
1683186035.7355368-UTR-P-wetherbeei_contig1486:1266..16781683186035.7355368-UTR-P-wetherbeei_contig1486:1266..1678Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1486 1267..1678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.7265265-CDS-P-wetherbeei_contig1486:1065..12661683186035.7265265-CDS-P-wetherbeei_contig1486:1065..1266Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1486 1066..1266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1486.1.1prot_P-wetherbeei_contig1486.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1486 1066..1266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1486.1.1

>prot_P-wetherbeei_contig1486.1.1 ID=prot_P-wetherbeei_contig1486.1.1|Name=mRNA_P-wetherbeei_contig1486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MPAKALQNSHPKVHSKGGRHCRTCGNQCGIIRKYGINMCRQCFRHYANDI
GFHKVSERGIGKEAAI*
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mRNA from alignment at P-wetherbeei_contig1486:568..1678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1486.1.1 ID=mRNA_P-wetherbeei_contig1486.1.1|Name=mRNA_P-wetherbeei_contig1486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1111bp|location=Sequence derived from alignment at P-wetherbeei_contig1486:568..1678+ (Phaeothamnion wetherbeei SAG_119_79)
TGCTGCGAGGCGTGGGCGGAAAAGGACGTCCGAGTGTGTAGTAGTACACT
TCTCGTCTCAAGCACGGTAATCTTGTGGACTCAGATGAGCGAGTGGTGTT
CTAATCCTCCAGCGTTGTCTGCGGAGGCCTGCGTTGGGGATAGCAGGAGA
AGGGAAGGCGTTGAGTATTATTTTTACTTGTTCGAGTTAATTCGAAGAGT
GGTTGAAAGCTGATACGTGCTGCTGTTGTCTAGAAAGAGGTTCTTTGAAA
CAGGGTTTTTTCCAATGTGGCACACAGTGCGCCTGTCATGCTGTAGCTTC
ATTAGCCAAATGGCATTAAAGTAAGATGACTTACATGTGCGAGAGTCGAC
ACGTTATCGAAATAATCATTTTGTTAATTACCCCTCTACTTGCAACCCTC
CCTCGGGCAAAGCTTGGCCTGTCCGTGAAAACCACTCCCCCCTTCCCCCA
TCGTATGTTCTGCTGCTTTTCTCGCTCTCCTTCAAATCGTTTGCAGCCAT
GCCTGCCAAAGCGCTCCAGAACTCGCACCCGAAGGTGCATAGCAAGGGCG
GCCGGCACTGCCGGACCTGCGGCAACCAGTGTGGCATCATCCGAAAGTAC
GGCATCAACATGTGCCGCCAGTGCTTCCGGCACTACGCCAACGACATCGG
ATTCCACAAGGTGAGTGAGCGGGGAATCGGGAAAGAAGCTGCGATATGAT
GTGAGCTTGGCGATATTGGCATAATTCCAGAAAACTTTGCATCGGTTTCA
CGTCGGGTACCCTCGCGCGGATGCTGACTGAATCTGTTGTGTCTTCCTTG
AGACATGTTAGTTTTTGTAGCGGAAAGTGGGGAAGGTAGACGCCCTCTCC
GCTTTTGGAGTTGTCTTGAGGGAAATCCTCTTTGCCGCTGTGTTGTCGCC
CTCACTGCGCACAAGCTTCGCCTGGCTTGTGAAAACGGCGTTCCACTGGT
TGCACCGCCTTCTCTTTGAGCTCAGCTCTTAACCCGTACTGGATGGACGA
AGAAGAATTCTTATTTGCCCTACCATCGCCGCCCGTATGGCCCCGTTCCC
TCCAATTCTGTCCGCCGCAGTACTCATAAATACTGGCGGGAGCGGCAAAG
GCGCTTCACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1486:568..1678+

>mRNA_P-wetherbeei_contig1486.1.1 ID=mRNA_P-wetherbeei_contig1486.1.1|Name=mRNA_P-wetherbeei_contig1486.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig1486:568..1678+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTGCCAAAGCGCTCCAGAACTCGCACCCGAAGGTGCATAGCAAGGG
CGGCCGGCACTGCCGGACCTGCGGCAACCAGTGTGGCATCATCCGAAAGT
ACGGCATCAACATGTGCCGCCAGTGCTTCCGGCACTACGCCAACGACATC
GGATTCCACAAGGTGAGTGAGCGGGGAATCGGGAAAGAAGCTGCGATATG
A
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