mRNA_P-wetherbeei_contig1485.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1485.4.1
Unique NamemRNA_P-wetherbeei_contig1485.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A835Z5P1_9STRA (Phosphodiesterase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P1_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.130e-45
Identity = 83/145 (57.24%), Postives = 111/145 (76.55%), Query Frame = 3
Query:  450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGVDAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
            +LIGTPGR+ ELALEK+R+KL    FVVLDEVD L+RPP+ +E+D I G +  +++RQTV+ASATG+SP V  AAAK+M+  + ++ G  +A A       LP N++H I+T+PKV+KF++LRR MHTQPFPE VM+FVNDP QV
Sbjct:  662 VLIGTPGRVCELALEKKRVKLANVKFVVLDEVDTLMRPPYDEEIDQIIGTMRSSEYRQTVYASATGRSPTVERAAAKHMKEGYTYVVGNDNAGA-----DGLPPNIKHTIITSPKVRKFESLRRLMHTQPFPESVMVFVNDPHQV 801          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: D7G4S8_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4S8_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.200e-41
Identity = 86/145 (59.31%), Postives = 105/145 (72.41%), Query Frame = 3
Query:  450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGVDAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
            I+I TPGR+ EL  ++RR+KLG    VVLDEVDALLRPP+  E+DAI  A P    RQ VFASATG+SP V AA+ +YMR +  F+ GG     +  R   LP+N+RH I+T PKVKKFDTLRR ++TQPFPE VM+FVNDP QV
Sbjct:  958 IVIATPGRLCELVFDRRRMKLGMVRTVVLDEVDALLRPPYDQEIDAIMDATPRGR-RQAVFASATGRSPVVSAASERYMREEPLFVGGGDLGVGSGQRRGGLPSNIRHTIVTMPKVKKFDTLRRLLNTQPFPESVMIFVNDPIQV 1101          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A4D9D1Y7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1Y7_9STRA)

HSP 1 Score: 119 bits (298), Expect = 8.570e-27
Identity = 70/164 (42.68%), Postives = 96/164 (58.54%), Query Frame = 3
Query:  450 ILIGTPGRIAELALEKRRIKLGGAAFVVLDEVDALLRPPHSDELDAIFGALPPADFRQTVFASATGQSPAVRAAAAKYMRAQHEFISGGV-------------------DAAAAQTRAQALPANLRHVILTAPKVKKFDTLRRFMHTQPFPECVMMFVNDPQQV 884
            +L+GTPGR+AE+ LEKR+ ++G A  +VLDEVD LL   +  +L  +  A+     RQ VFASATG SP V A A+  M+  ++ IS                      D A++   +  LPA+LRH IL  P VK  D LRRF++T+P PECV++FVND  +V
Sbjct:  185 VLVGTPGRVAEMVLEKRKARIGRAEMLVLDEVDMLLDDSYHGDLRMLVQAM--GSLRQAVFASATGASPGVEALASNVMQGPYQIISSSSSPSSPSSTPLLDPQEEDAGDQASSLPPSIELPASLRHGILITPPVKAVDNLRRFLNTEPKPECVLVFVNDALKV 346          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A7S2XV29_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV29_9STRA)

HSP 1 Score: 115 bits (288), Expect = 2.370e-25
Identity = 66/147 (44.90%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    1 SVLTIGSIEPLPSYAGRSFAELGLATAEADHPLAALARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
            +VL++ S+  +   AG SF E G+    +    A +  N+  MGI  PT VQA +L+++L    D V+HA TGSGKTLA+LLP + ++DP    VQ++VV P REL AQ+ +V  +L+ GTG+    + GGAN+ RQIE LKK +PQ
Sbjct:  129 NVLSLESLGEISVAAG-SFEEAGMTPQNSP---AGMLGNLREMGILQPTSVQAAALQSLLVEGRDGVLHAPTGSGKTLAYLLPAVCKVDPDRDVVQVVVVVPSRELGAQVANVLNQLLPGTGITPLSLIGGANINRQIENLKKKRPQ 271          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: UPI0009950723 (DEAD/DEAH box helicase n=1 Tax=Alkalihalobacillus patagoniensis TaxID=228576 RepID=UPI0009950723)

HSP 1 Score: 103 bits (256), Expect = 1.470e-21
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 1
Query:  103 ALARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
            ALA N+ A GI++PTP+Q  ++   L N  + ++ + TGSGKTLA++LP+L +++    A Q L++AP +ELA QIE V     E TGL      GGAN+ RQ+EKLKK KPQ
Sbjct:   13 ALAGNLAAQGITSPTPIQEAAIPEAL-NGKNLILRSQTGSGKTLAYVLPILAKIELEKQATQALIIAPSQELAVQIETVIKETSEQTGLSCMVFIGGANINRQVEKLKKKKPQ 124          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: E0I6B9_9BACL (DEAD/DEAH box helicase domain protein n=1 Tax=Paenibacillus curdlanolyticus YK9 TaxID=717606 RepID=E0I6B9_9BACL)

HSP 1 Score: 103 bits (258), Expect = 2.160e-21
Identity = 59/112 (52.68%), Postives = 75/112 (66.96%), Query Frame = 1
Query:  106 LARNVEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
            LA  +EA GI  PT VQ+E++ A+L   +D    + TGSGKTLAFLLP+L QLD +SSAVQ +V+AP +ELA QI  V     E  G+R   + GGA + RQ+E LKK KPQ
Sbjct:   14 LADALEAAGIKEPTAVQSEAIAALLAG-ADVTARSQTGSGKTLAFLLPMLEQLDSASSAVQAVVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAMSRQVENLKKHKPQ 124          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: R1DX56_EMIHU (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DX56_EMIHU)

HSP 1 Score: 95.9 bits (237), Expect = 2.230e-21
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 1
Query:  142 PTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKP 438
            P  +QA S   + G R DAV+ AHTGSGKTLA LLPV+ QLD +    Q L++ P RELA Q+  V   L++GTGL +  + GGANV RQ+E+L+K +P
Sbjct:    1 PNALQAASYSVLAGGR-DAVIDAHTGSGKTLALLLPVVSQLDAAVREPQALILCPSRELAHQVARVAASLLQGTGLSACALVGGANVNRQLERLRKAQP 98          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A074MG61_9BACL (Uncharacterized protein n=2 Tax=Tumebacillus TaxID=432330 RepID=A0A074MG61_9BACL)

HSP 1 Score: 102 bits (253), Expect = 5.240e-21
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  118 VEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKP 438
            +E +GI+ PTPVQA+ +  +   R D V  + TGSGKTLAFLLP L+++D +   VQ+LV+AP REL  QIE     + EGT +RS  + GGAN+ RQ+EKLK DKP
Sbjct:   22 LEKLGITIPTPVQADVIPLVQEGR-DVVAQSQTGSGKTLAFLLPQLQRIDTTKRDVQVLVLAPTRELTVQIESAIREVTEGTEIRSLALVGGANIDRQLEKLK-DKP 126          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: A0A7X3GI31_9BACL (DEAD/DEAH box helicase n=1 Tax=Paenibacillus sp. MMS18-CY102 TaxID=2682849 RepID=A0A7X3GI31_9BACL)

HSP 1 Score: 101 bits (252), Expect = 1.610e-20
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  118 VEAMGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKKDKPQ 441
            +EA GI  PT VQ+E++ A+L   +D    + TGSGKTLAFLLP+L QLD +SS+VQ +V+AP +ELA QI  V     E  G+R   + GGA V RQ++ LKK KPQ
Sbjct:   18 LEAAGIKEPTAVQSEAIAALLAG-ADVTARSQTGSGKTLAFLLPMLEQLDNASSSVQAIVLAPTQELAMQITRVAQAYGEAVGIRVVSLIGGAAVSRQVDNLKKHKPQ 124          
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Match: UPI000B439CA3 (DEAD/DEAH box helicase n=1 Tax=Indiicoccus explosivorum TaxID=1917864 RepID=UPI000B439CA3)

HSP 1 Score: 99.4 bits (246), Expect = 3.890e-20
Identity = 56/101 (55.45%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  130 GISAPTPVQAESL-EAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSSSAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLKK 429
            G  AP PVQAE + E + GN  D V  + TGSGKTLA+LLPVL + DPS   VQ ++VAP +ELA QI +V      GTG+   ++ GGANV RQIEKLKK
Sbjct:   19 GFGAPLPVQAEMIPEMLAGN--DVVAQSPTGSGKTLAYLLPVLEKTDPSKQQVQAMIVAPSQELAMQIVNVLRDWTAGTGISVAQLIGGANVQRQIEKLKK 117          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1485.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5P1_9STRA3.130e-4557.24Phosphodiesterase n=1 Tax=Tribonema minus TaxID=30... [more]
D7G4S8_ECTSI1.200e-4159.31DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A4D9D1Y7_9STRA8.570e-2742.68Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2XV29_9STRA2.370e-2544.90Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
UPI00099507231.470e-2147.79DEAD/DEAH box helicase n=1 Tax=Alkalihalobacillus ... [more]
E0I6B9_9BACL2.160e-2152.68DEAD/DEAH box helicase domain protein n=1 Tax=Paen... [more]
R1DX56_EMIHU2.230e-2151.52Helicase ATP-binding domain-containing protein (Fr... [more]
A0A074MG61_9BACL5.240e-2152.34Uncharacterized protein n=2 Tax=Tumebacillus TaxID... [more]
A0A7X3GI31_9BACL1.610e-2051.85DEAD/DEAH box helicase n=1 Tax=Paenibacillus sp. M... [more]
UPI000B439CA33.890e-2055.45DEAD/DEAH box helicase n=1 Tax=Indiicoccus explosi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1485contigP-wetherbeei_contig1485:5417..6755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4S8
PFAMsDEAD,Helicase_C
Model size884
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.46e-33
EggNOG OGsCOG0513@1|root,KOG0327@2759|Eukaryota
Descriptionhelicase activity
Cds size330
COG categoryJKL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.6205847-UTR-P-wetherbeei_contig1485:5416..55421683186035.6205847-UTR-P-wetherbeei_contig1485:5416..5542Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1485 5417..5542 +
1683186035.6454806-UTR-P-wetherbeei_contig1485:6187..63431683186035.6454806-UTR-P-wetherbeei_contig1485:6187..6343Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1485 6188..6343 +
1683186035.6534011-UTR-P-wetherbeei_contig1485:6483..67551683186035.6534011-UTR-P-wetherbeei_contig1485:6483..6755Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1485 6484..6755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.6296854-CDS-P-wetherbeei_contig1485:5542..58651683186035.6296854-CDS-P-wetherbeei_contig1485:5542..5865Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 5543..5865 +
1683186035.637552-CDS-P-wetherbeei_contig1485:6180..61871683186035.637552-CDS-P-wetherbeei_contig1485:6180..6187Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1485 6181..6187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1485.4.1prot_P-wetherbeei_contig1485.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1485 5543..6187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1485.4.1

>prot_P-wetherbeei_contig1485.4.1 ID=prot_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
MGISAPTPVQAESLEAILGNRSDAVVHAHTGSGKTLAFLLPVLRQLDPSS
SAVQLLVVAPGRELAAQIEDVCGRLVEGTGLRSQKVFGGANVVRQIEKLK
KDKPQASSS*
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mRNA from alignment at P-wetherbeei_contig1485:5417..6755+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1485.4.1 ID=mRNA_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1339bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:5417..6755+ (Phaeothamnion wetherbeei SAG_119_79)
TCGGTGCTGACCATCGGCAGCATCGAGCCGCTCCCGAGCTACGCCGGCCG CAGCTTCGCTGAGCTCGGGCTCGCCACCGCCGAAGCCGACCACCCGCTGG CGGCCCTGGCGCGCAACGTTGAAGCCATGGGCATTTCGGCGCCGACGCCC GTCCAGGCCGAAAGCCTGGAAGCAATCCTGGGAAACCGCTCCGACGCGGT CGTCCACGCGCACACGGGGTCTGGGAAGACGCTGGCGTTCTTGTTGCCGG TGCTGCGGCAGCTGGACCCGTCGTCGAGCGCCGTACAACTGCTGGTGGTA GCTCCAGGCCGGGAGCTGGCGGCGCAGATCGAGGACGTTTGCGGCCGGCT GGTGGAAGGGACTGGCTTGCGGAGCCAAAAGGTATTCGGTGGCGCCAACG TGGTGCGACAGATCGAGAAGCTCAAGAAGGACAAGCCCCAGGCAAGCTCG TTTGGCATCTCGTGAGCTCTGCTGCCGCTCACCGCGGCCGTCTTCTGCTG ACACACACTCTCTTTCGAGCTTTTTGCATCTGCTCTTGTTCTGCGGGCGC GAGCCAGCCCGCCAGGCGCGCCACTGTCAGACTCTTTCTTGTATCACTTT CGCTCTCTGACCACTGCCGCGGCCGCCACCACCGCAACTGATTCCGCCTT TAATACCATTGCTCCATCGCCTCCGCGCTGCTCTGACCGTCGCTTCTTTC TTCTCCTGCACTTGCCGCCTGTCACCGCCCGCTGCTCACTACCGCCACAC TCGCTGCCCAGCAGATCCTGATCGGGACGCCCGGGCGCATCGCAGAGCTG GCGCTGGAGAAGCGGCGAATCAAGCTGGGCGGCGCAGCCTTTGTGGTGCT CGACGAGGTGGACGCCCTGCTGCGGCCGCCGCACTCTGACGAACTCGACG CCATCTTCGGCGCGCTCCCGCCCGCCGGTGAGAGCCGGTTCTGAGAATGT AGTAGCCGGAACCAAGATGCTGAGTGGCTAGGACGTGCTGGGAAGGGAGT CTTTCTTTCTTTAAGAGAGCGTAACCTCCTCCAACCTTCGCGCTGGCATG CACAATATTCCCAACAGATTTTCGGCAGACGGTCTTCGCGTCGGCGACTG GGCAGTCGCCGGCGGTCCGCGCCGCCGCCGCCAAGTACATGCGTGCGCAG CATGAGTTCATCTCGGGCGGTGTCGACGCGGCGGCGGCGCAGACGCGGGC GCAGGCGCTGCCGGCCAACCTGCGGCACGTAATCCTTACGGCACCGAAGG TGAAGAAGTTCGACACGCTGCGGCGGTTCATGCACACGCAGCCGTTTCCC GAGTGTGTCATGATGTTCGTCAACGACCCCCAGCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1485:5417..6755+

>mRNA_P-wetherbeei_contig1485.4.1 ID=mRNA_P-wetherbeei_contig1485.4.1|Name=mRNA_P-wetherbeei_contig1485.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig1485:5417..6755+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCATTTCGGCGCCGACGCCCGTCCAGGCCGAAAGCCTGGAAGCAAT
CCTGGGAAACCGCTCCGACGCGGTCGTCCACGCGCACACGGGGTCTGGGA
AGACGCTGGCGTTCTTGTTGCCGGTGCTGCGGCAGCTGGACCCGTCGTCG
AGCGCCGTACAACTGCTGGTGGTAGCTCCAGGCCGGGAGCTGGCGGCGCA
GATCGAGGACGTTTGCGGCCGGCTGGTGGAAGGGACTGGCTTGCGGAGCC
AAAAGGTATTCGGTGGCGCCAACGTGGTGCGACAGATCGAGAAGCTCAAG
AAGGACAAGCCCCAGGCAAGCTCATCCTGA
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