mRNA_P-wetherbeei_contig14847.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14847.1.1
Unique NamemRNA_P-wetherbeei_contig14847.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14847.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14847contigP-wetherbeei_contig14847:28..1119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1092
Hectar predicted targeting categoryother localisation
Exons1
Cds size708
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.3792727-UTR-P-wetherbeei_contig14847:27..1531683186035.3792727-UTR-P-wetherbeei_contig14847:27..153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14847 28..153 +
1683186035.3972127-UTR-P-wetherbeei_contig14847:861..11191683186035.3972127-UTR-P-wetherbeei_contig14847:861..1119Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14847 862..1119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.388398-CDS-P-wetherbeei_contig14847:153..8611683186035.388398-CDS-P-wetherbeei_contig14847:153..861Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14847 154..861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14847.1.1prot_P-wetherbeei_contig14847.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14847 154..861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14847.1.1

>prot_P-wetherbeei_contig14847.1.1 ID=prot_P-wetherbeei_contig14847.1.1|Name=mRNA_P-wetherbeei_contig14847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=236bp
MHGSSNAAATMMFAGAFDPWQRWGEEGDTATSSSQRWRPGSSEASPREDR
AVGLAAGGSSSSLRGLLLGEVRPVPTDTCTFSDGAYTWGTSEASESKRVR
TATGPGRPGASSGGGAPRAAPADGDSAAAAATTAAAAEPDYKLLYQQAAL
ESTVLRLKLSYFATECRRILSARGDLDRTISTVQNALDAMMSELQQDGGD
AAADSDSDDMESDDGGWTDREDRLDSSSSCGSNGF*
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mRNA from alignment at P-wetherbeei_contig14847:28..1119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14847.1.1 ID=mRNA_P-wetherbeei_contig14847.1.1|Name=mRNA_P-wetherbeei_contig14847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig14847:28..1119+ (Phaeothamnion wetherbeei SAG_119_79)
AACGGCAATAATCGTTGACTTTCCCAGCGTCGAGCAGGAGGCTTGGTTTG
AAAGATTCGGGAGGAGCAAATACAGATTATTGAAGACGGAGGGAGCAGCG
CCGACTGCGGAAGCCAGCGCTCAACGATGCACGGGTCAAGCAACGCGGCG
GCGACGATGATGTTCGCGGGCGCCTTTGATCCCTGGCAGCGGTGGGGGGA
GGAGGGCGATACGGCGACTTCGTCGTCACAGCGATGGCGTCCGGGCAGCA
GCGAAGCTTCGCCTCGAGAGGATCGGGCCGTGGGGCTCGCAGCTGGCGGT
TCCTCGTCCTCCTTGCGGGGCTTGTTGCTGGGGGAGGTCCGGCCAGTCCC
CACAGACACCTGCACATTCTCCGACGGAGCGTATACCTGGGGAACGTCCG
AGGCAAGCGAGTCCAAGCGCGTGCGGACGGCGACGGGGCCCGGCAGACCA
GGCGCGTCCTCCGGCGGGGGCGCTCCTCGTGCTGCTCCTGCCGATGGTGA
CTCTGCCGCCGCGGCCGCCACTACTGCTGCAGCAGCGGAGCCGGACTACA
AGTTGCTCTACCAACAAGCGGCGCTGGAGTCGACGGTGCTGCGGCTCAAG
CTGAGCTACTTTGCGACGGAGTGCAGGCGAATACTGTCAGCGCGGGGCGA
CCTTGACCGCACCATCAGCACGGTCCAAAATGCCCTCGACGCGATGATGT
CGGAGCTGCAGCAGGACGGCGGCGACGCCGCCGCTGACAGCGACAGCGAT
GACATGGAAAGTGACGACGGTGGCTGGACGGACCGGGAAGACCGGTTGGA
CTCCAGCTCCAGCTGCGGCAGCAACGGCTTTTGATGAAGGAAGTCCTGCA
GCCGTTTCTCCTTGCCTTCACAAGCAGGCTATGAAAAAAGGGAAGGCCGC
CGGCTTTTAGTCAAAGCGGGCGGCGGCAACTGTGACCAACTGTGACTAAG
CCCCCCTATTTTGATTTTTCGGAGCGCTCGGTCGGCAAGCCGAGCACGCC
CAACATGGGAATGGGGGAAGGAAATGAGTGATGCAAATAAATAGCGAAAC
CTTTTTAATAGTCATAAATAGAGAAGGAATTTGCTGACTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14847:28..1119+

>mRNA_P-wetherbeei_contig14847.1.1 ID=mRNA_P-wetherbeei_contig14847.1.1|Name=mRNA_P-wetherbeei_contig14847.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=708bp|location=Sequence derived from alignment at P-wetherbeei_contig14847:28..1119+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGGTCAAGCAACGCGGCGGCGACGATGATGTTCGCGGGCGCCTT
TGATCCCTGGCAGCGGTGGGGGGAGGAGGGCGATACGGCGACTTCGTCGT
CACAGCGATGGCGTCCGGGCAGCAGCGAAGCTTCGCCTCGAGAGGATCGG
GCCGTGGGGCTCGCAGCTGGCGGTTCCTCGTCCTCCTTGCGGGGCTTGTT
GCTGGGGGAGGTCCGGCCAGTCCCCACAGACACCTGCACATTCTCCGACG
GAGCGTATACCTGGGGAACGTCCGAGGCAAGCGAGTCCAAGCGCGTGCGG
ACGGCGACGGGGCCCGGCAGACCAGGCGCGTCCTCCGGCGGGGGCGCTCC
TCGTGCTGCTCCTGCCGATGGTGACTCTGCCGCCGCGGCCGCCACTACTG
CTGCAGCAGCGGAGCCGGACTACAAGTTGCTCTACCAACAAGCGGCGCTG
GAGTCGACGGTGCTGCGGCTCAAGCTGAGCTACTTTGCGACGGAGTGCAG
GCGAATACTGTCAGCGCGGGGCGACCTTGACCGCACCATCAGCACGGTCC
AAAATGCCCTCGACGCGATGATGTCGGAGCTGCAGCAGGACGGCGGCGAC
GCCGCCGCTGACAGCGACAGCGATGACATGGAAAGTGACGACGGTGGCTG
GACGGACCGGGAAGACCGGTTGGACTCCAGCTCCAGCTGCGGCAGCAACG
GCTTTTGA
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