mRNA_P-wetherbeei_contig14842.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14842.1.1
Unique NamemRNA_P-wetherbeei_contig14842.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14842.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14842contigP-wetherbeei_contig14842:256..931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size514
Hectar predicted targeting categoryother localisation
Exons2
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.2906785-CDS-P-wetherbeei_contig14842:255..6811683186035.2906785-CDS-P-wetherbeei_contig14842:255..681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14842 256..681 -
1683186035.2991707-CDS-P-wetherbeei_contig14842:844..9011683186035.2991707-CDS-P-wetherbeei_contig14842:844..901Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14842 845..901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186035.3067923-UTR-P-wetherbeei_contig14842:901..9311683186035.3067923-UTR-P-wetherbeei_contig14842:901..931Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14842 902..931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14842.1.1prot_P-wetherbeei_contig14842.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14842 256..901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14842.1.1

>prot_P-wetherbeei_contig14842.1.1 ID=prot_P-wetherbeei_contig14842.1.1|Name=mRNA_P-wetherbeei_contig14842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MASNPPASALYPLIYRFLKDCGLKKTAKRFAKEAKIAAATLAQGGGGDSL
LEIYRRRAAAAASGDELGVASSNESDGNESDASDDEGSTAAAADASGSEG
SGDDDNDDDESATAKAAAALGDDQAEESSGGEDEYEDDLKSGSSGSDSAD
VAPAVGLRMSG
back to top

mRNA from alignment at P-wetherbeei_contig14842:256..931-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14842.1.1 ID=mRNA_P-wetherbeei_contig14842.1.1|Name=mRNA_P-wetherbeei_contig14842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=676bp|location=Sequence derived from alignment at P-wetherbeei_contig14842:256..931- (Phaeothamnion wetherbeei SAG_119_79)
CCAGAAACCGCTATTGACATCTTCAAAAACATGGCGTCCAATCCGCCAGC
ATCGGCGTTGTACCCCCTGATCTACCGTTTCCTGAAGGTCAGTCGTGTGA
ATGAGAGGAAGCTTCGCTGAAAGACCAAGGTCTTCGCCAAACTCTCTTTT
CCTTTTCCGGCCTTTCTCGCAGAGCTTGCTCTTCTACCTTTTTTCCACAG
GCACACTGCCGACGAAAACTTGAGTTCCCCGAAATTTCTCGTACATGCAG
GACTGCGGTCTCAAGAAAACAGCAAAGAGGTTCGCGAAAGAGGCGAAGAT
CGCGGCCGCCACGCTGGCGCAAGGCGGCGGTGGTGACAGCCTTCTAGAGA
TTTACCGTCGCAGGGCAGCAGCAGCGGCATCAGGGGACGAATTGGGTGTT
GCATCCAGCAACGAAAGCGATGGCAACGAAAGCGACGCCAGCGACGACGA
GGGCTCGACTGCGGCGGCTGCCGATGCGAGTGGGAGCGAAGGCAGCGGCG
ACGACGACAACGACGACGACGAAAGCGCTACTGCGAAGGCAGCGGCCGCG
TTGGGGGACGATCAGGCCGAGGAGTCTTCCGGTGGTGAGGACGAATACGA
GGACGACTTGAAGTCGGGGAGCAGCGGATCCGACTCGGCTGATGTTGCGC
CCGCCGTCGGCCTGCGCATGTCCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14842:256..931-

>mRNA_P-wetherbeei_contig14842.1.1 ID=mRNA_P-wetherbeei_contig14842.1.1|Name=mRNA_P-wetherbeei_contig14842.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig14842:256..931- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTCCAATCCGCCAGCATCGGCGTTGTACCCCCTGATCTACCGTTT
CCTGAAGGACTGCGGTCTCAAGAAAACAGCAAAGAGGTTCGCGAAAGAGG
CGAAGATCGCGGCCGCCACGCTGGCGCAAGGCGGCGGTGGTGACAGCCTT
CTAGAGATTTACCGTCGCAGGGCAGCAGCAGCGGCATCAGGGGACGAATT
GGGTGTTGCATCCAGCAACGAAAGCGATGGCAACGAAAGCGACGCCAGCG
ACGACGAGGGCTCGACTGCGGCGGCTGCCGATGCGAGTGGGAGCGAAGGC
AGCGGCGACGACGACAACGACGACGACGAAAGCGCTACTGCGAAGGCAGC
GGCCGCGTTGGGGGACGATCAGGCCGAGGAGTCTTCCGGTGGTGAGGACG
AATACGAGGACGACTTGAAGTCGGGGAGCAGCGGATCCGACTCGGCTGAT
GTTGCGCCCGCCGTCGGCCTGCGCATGTCCGGC
back to top