mRNA_P-wetherbeei_contig14831.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14831.1.1
Unique NamemRNA_P-wetherbeei_contig14831.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A3C2B6L0_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6L0_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 1.140e-30
Identity = 61/79 (77.22%), Postives = 66/79 (83.54%), Query Frame = 1 
Query:   25 SFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPKD 261
            SF DKAKEKA QL+A AKEK+DD KDNRKADDLLDDLGRI YR  T+R E GDEA + ELV ALQALEAEGTPVLG K+
Sbjct:    3 SFFDKAKEKAQQLAATAKEKVDDFKDNRKADDLLDDLGRILYRQRTNRGEAGDEAAIAELVTALQALEAEGTPVLGTKE 81
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A539DT41_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A539DT41_9ACTN)

HSP 1 Score: 113 bits (283), Expect = 2.440e-30
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1 
Query:    1 PSARTRDMSFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPKD 261
            P  +   MSFLDKAKEKA+QL+  AKEKIDD+KDNRKADDLLD+LGRITYR HTDR E GD   +  LV  LQALEA+GTPVLG K+
Sbjct:   19 PIGQNAPMSFLDKAKEKATQLTQQAKEKIDDLKDNRKADDLLDELGRITYRQHTDRAETGDPEAIATLVGQLQALEADGTPVLGSKE 105
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A7K1BC11_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1BC11_9ACTN)

HSP 1 Score: 110 bits (275), Expect = 1.940e-29
Identity = 60/79 (75.95%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   22 MSFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPK 258
            MSFLDKAKEKA+QL+  AKEK+DD+KD RKAD LLDDLGRI YR  T R E GDEA +TELV  LQALEAEG PVLGPK
Sbjct:    1 MSFLDKAKEKATQLTQQAKEKVDDLKDARKADSLLDDLGRILYRQRTGRGEPGDEAAITELVTQLQALEAEGAPVLGPK 79
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A6I3F3E2_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6I3F3E2_9ACTN)

HSP 1 Score: 92.8 bits (229), Expect = 1.700e-22
Identity = 56/96 (58.33%), Postives = 64/96 (66.67%), Query Frame = 1 
Query:   25 SFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPKDAPAEDPAP-PAFPPPSV 309
            SFLDKAKEKA QL  AAKEK D++KD RKADDLLDDLGRI Y   T R    DE K+ +LV  L+ LE  GTP+LG K   +  P P P FP P+ 
Sbjct:    3 SFLDKAKEKAQQLGTAAKEKADEVKDKRKADDLLDDLGRILYAQRTGRPAVDDETKIADLVGQLKTLEDTGTPILGEKSTDSTLPPPAPNFPAPNA 98
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A6J7E1X6_9ZZZZ (Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A6J7E1X6_9ZZZZ)

HSP 1 Score: 89.7 bits (221), Expect = 3.670e-21
Identity = 52/92 (56.52%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:   22 MSFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPKDAPAEDPAPPAFP 297
            MSFLDKAKEKA+QL+ AAKEK+DDIKD+RK DDLLDD+GRI +R  T+  +  D+A +  +VA L+ L+A+G  VL       + PAPPA P
Sbjct:    3 MSFLDKAKEKATQLTQAAKEKVDDIKDDRKVDDLLDDIGRIIFRQRTEGAQPDDDATIDGIVAQLKELDAKGANVL-------DKPAPPAEP 87
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BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Match: A0A3N5KTD4_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A3N5KTD4_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 8.000e-10
Identity = 32/80 (40.00%), Postives = 48/80 (60.00%), Query Frame = 1 
Query:   22 MSFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRKEDGDEAKVTELVAALQALEAEGTPVLGPKD 261
            M   DK K +A  L    ++K++D++  +KADDLLDDLGR+ Y   T+R     E ++  +VA L+ LE EG  +L P +
Sbjct:    1 MGLFDKVKSQAMDLKGKVEDKVEDVQAKKKADDLLDDLGRLLYAERTERPVPNAEDEIGRIVADLKKLEDEGLAILPPSE 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14831.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3C2B6L0_9ACTN1.140e-3077.22Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A539DT41_9ACTN2.440e-3070.11Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1BC11_9ACTN1.940e-2975.95Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6I3F3E2_9ACTN1.700e-2258.33Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6J7E1X6_9ZZZZ3.670e-2156.52Unannotated protein n=2 Tax=root TaxID=1 RepID=A0A... [more]
A0A3N5KTD4_9ACTN8.000e-1040.00Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14831contigP-wetherbeei_contig14831:37..348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size312
Hectar predicted targeting categoryother localisation
Exons1
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.9141395-UTR-P-wetherbeei_contig14831:36..571683186034.9141395-UTR-P-wetherbeei_contig14831:36..57Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14831 37..57 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.9253476-CDS-P-wetherbeei_contig14831:57..3481683186034.9253476-CDS-P-wetherbeei_contig14831:57..348Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14831 58..348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14831.1.1prot_P-wetherbeei_contig14831.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14831 58..348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14831.1.1

>prot_P-wetherbeei_contig14831.1.1 ID=prot_P-wetherbeei_contig14831.1.1|Name=mRNA_P-wetherbeei_contig14831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MSFLDKAKEKASQLSAAAKEKIDDIKDNRKADDLLDDLGRITYRAHTDRK
EDGDEAKVTELVAALQALEAEGTPVLGPKDAPAEDPAPPAFPPPSV*
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mRNA from alignment at P-wetherbeei_contig14831:37..348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14831.1.1 ID=mRNA_P-wetherbeei_contig14831.1.1|Name=mRNA_P-wetherbeei_contig14831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig14831:37..348+ (Phaeothamnion wetherbeei SAG_119_79)
CCATCCGCTAGAACACGGGACATGAGCTTCCTCGACAAGGCAAAAGAGAA
GGCCAGCCAGCTCAGTGCTGCGGCCAAAGAGAAGATCGACGACATCAAGG
ACAACCGCAAGGCCGACGACCTGCTCGACGACCTCGGACGCATCACCTAC
CGGGCGCACACCGATCGCAAGGAAGACGGCGACGAGGCCAAGGTCACCGA
GCTGGTTGCCGCGCTGCAGGCGCTCGAAGCCGAAGGCACCCCCGTGCTCG
GCCCGAAGGACGCCCCCGCCGAGGATCCTGCTCCCCCGGCCTTCCCGCCG
CCCAGCGTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14831:37..348+

>mRNA_P-wetherbeei_contig14831.1.1 ID=mRNA_P-wetherbeei_contig14831.1.1|Name=mRNA_P-wetherbeei_contig14831.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig14831:37..348+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTCCTCGACAAGGCAAAAGAGAAGGCCAGCCAGCTCAGTGCTGC
GGCCAAAGAGAAGATCGACGACATCAAGGACAACCGCAAGGCCGACGACC
TGCTCGACGACCTCGGACGCATCACCTACCGGGCGCACACCGATCGCAAG
GAAGACGGCGACGAGGCCAAGGTCACCGAGCTGGTTGCCGCGCTGCAGGC
GCTCGAAGCCGAAGGCACCCCCGTGCTCGGCCCGAAGGACGCCCCCGCCG
AGGATCCTGCTCCCCCGGCCTTCCCGCCGCCCAGCGTCTGA
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