mRNA_P-wetherbeei_contig14821.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14821.1.1
Unique NamemRNA_P-wetherbeei_contig14821.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14821.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14821contigP-wetherbeei_contig14821:1175..1673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog529818.AMSG_06385T0
PFAMsDUF389,F-box-like,IQ,LRR_6
Model size499
Max annot lvl2759|Eukaryota
KEGG koko:K10268
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-05
EggNOG OGsKOG4341@1|root,KOG4341@2759|Eukaryota
Descriptionmodulation by host of viral RNA genome replication
Cds size498
COG categoryKLT
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.6221542-CDS-P-wetherbeei_contig14821:1175..16731683186034.6221542-CDS-P-wetherbeei_contig14821:1175..1673Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14821 1176..1673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14821.1.1prot_P-wetherbeei_contig14821.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14821 1176..1673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14821.1.1

>prot_P-wetherbeei_contig14821.1.1 ID=prot_P-wetherbeei_contig14821.1.1|Name=mRNA_P-wetherbeei_contig14821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
GGCGGVLVSLGLRGCHVSSAGLAWLAAAAPRLERLDVAGVADVDDVALAA
LPSLRELDLSCCMSITDSGVRALTQGSPGLRRVSLHATAVTDAAARWLAR
HCRELRDVNLSLTQVSGRAVRSLLAAPALVTCNLRCAAREFGDGCPLPEL
RRQLAARGGRVLGLER
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mRNA from alignment at P-wetherbeei_contig14821:1175..1673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14821.1.1 ID=mRNA_P-wetherbeei_contig14821.1.1|Name=mRNA_P-wetherbeei_contig14821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=499bp|location=Sequence derived from alignment at P-wetherbeei_contig14821:1175..1673- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGGGGGGGTTCTGGTATCGCTGGGGCTCCGCGGCTGCCATGT
GTCGTCGGCTGGGCTGGCGTGGCTGGCGGCGGCGGCGCCGCGGCTGGAGC
GGCTAGACGTGGCGGGCGTCGCCGATGTCGACGACGTGGCGCTGGCGGCG
TTGCCGTCGCTTCGCGAACTGGATCTGTCCTGCTGCATGAGCATCACCGA
CTCGGGCGTGCGCGCGCTGACGCAGGGATCCCCGGGCCTCCGCCGCGTCT
CGCTACACGCGACGGCCGTGACAGACGCCGCCGCGCGCTGGCTGGCGCGG
CACTGTCGGGAGCTGCGTGACGTCAACCTGTCGCTGACGCAGGTCAGCGG
CCGCGCCGTGCGGTCGCTGCTGGCGGCGCCGGCGCTCGTCACCTGCAACT
TGCGCTGCGCCGCGCGCGAGTTCGGGGACGGCTGCCCGCTCCCGGAGCTC
CGGCGGCAGCTGGCGGCGCGTGGCGGCCGCGTCCTGGGGCTTGAGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14821:1175..1673-

>mRNA_P-wetherbeei_contig14821.1.1 ID=mRNA_P-wetherbeei_contig14821.1.1|Name=mRNA_P-wetherbeei_contig14821.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig14821:1175..1673- (Phaeothamnion wetherbeei SAG_119_79)
GGCGGCTGCGGGGGGGTTCTGGTATCGCTGGGGCTCCGCGGCTGCCATGT
GTCGTCGGCTGGGCTGGCGTGGCTGGCGGCGGCGGCGCCGCGGCTGGAGC
GGCTAGACGTGGCGGGCGTCGCCGATGTCGACGACGTGGCGCTGGCGGCG
TTGCCGTCGCTTCGCGAACTGGATCTGTCCTGCTGCATGAGCATCACCGA
CTCGGGCGTGCGCGCGCTGACGCAGGGATCCCCGGGCCTCCGCCGCGTCT
CGCTACACGCGACGGCCGTGACAGACGCCGCCGCGCGCTGGCTGGCGCGG
CACTGTCGGGAGCTGCGTGACGTCAACCTGTCGCTGACGCAGGTCAGCGG
CCGCGCCGTGCGGTCGCTGCTGGCGGCGCCGGCGCTCGTCACCTGCAACT
TGCGCTGCGCCGCGCGCGAGTTCGGGGACGGCTGCCCGCTCCCGGAGCTC
CGGCGGCAGCTGGCGGCGCGTGGCGGCCGCGTCCTGGGGCTTGAGCGG
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