mRNA_P-wetherbeei_contig14820.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14820.1.1
Unique NamemRNA_P-wetherbeei_contig14820.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A6H5L046_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L046_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 4.060e-48
Identity = 85/121 (70.25%), Postives = 101/121 (83.47%), Query Frame = 1
Query:   10 PKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRI-NEGEAADDE 369
            PK KK +KK+ +K F +DC +P EDRVLD  SFEKFLHDRIKVNGKAG LG++VTIAR+ KA++ + A  PFSKRYLKYL+KKYLKKQQLRDYL V+ASNKNTYELRYF I N+ + AD+E
Sbjct:    5 PKSKKCSKKQTVK-FVIDCFIPVEDRVLDPSSFEKFLHDRIKVNGKAGQLGDAVTIARE-KARITVTAQAPFSKRYLKYLTKKYLKKQQLRDYLHVIASNKNTYELRYFSIVNDQQEADEE 123          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: M4BIK4_HYAAE (Uncharacterized protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4BIK4_HYAAE)

HSP 1 Score: 156 bits (395), Expect = 5.020e-47
Identity = 85/127 (66.93%), Postives = 104/127 (81.89%), Query Frame = 1
Query:    1 MAPP-KVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINE-GEAADDEDE 375
            MAPP K KK++KK+++K FT+DC +P +D VLD  SFEKFLHDRIKV GK G LG+S+TI R+ K KL + A  PFSKRYLKYL+KKYLKKQQLRDYL V+AS+KNTYELRYF I++ G  A++EDE
Sbjct:    1 MAPPHKTKKISKKQQLK-FTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGDSITITRE-KTKLQVAAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDAEEEDE 125          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A8D1CLN3_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1CLN3_PIG)

HSP 1 Score: 152 bits (385), Expect = 1.570e-45
Identity = 83/121 (68.60%), Postives = 95/121 (78.51%), Query Frame = 1
Query:   10 PKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINEGEAADDED 372
            PK KK +KK+ +K F +D HVP  DRVLD  SFEKFLHDRIKVNGKAG LG+ VTI R+ +A + + A  PFSKRYLKYL+KKYLKKQQLRDYL V+ASNKNTYELRYF I   E A DE+
Sbjct:    5 PKSKKSSKKQTVK-FVIDSHVPVADRVLDPASFEKFLHDRIKVNGKAGQLGDVVTITRE-RASITVTAQAPFSKRYLKYLTKKYLKKQQLRDYLHVIASNKNTYELRYFSIINDELAADEE 123          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A0M0K115_9EUKA (60s ribosomal protein l22 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K115_9EUKA)

HSP 1 Score: 152 bits (385), Expect = 2.080e-45
Identity = 79/121 (65.29%), Postives = 98/121 (80.99%), Query Frame = 1
Query:   13 KVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINEGEAADDEDE 375
            K KK+TK+K+  KFT+DC  P +D ++D  SFEKFL DRIKVNGK GNLGE +T++RD KAK+++ A   FSKRYLKYLSKKYLKKQQLRD+L V+ASNK  YELRY+ I+E +A +DEDE
Sbjct:   14 KAKKITKRKQTLKFTIDCSQPVDDGIMDAASFEKFLQDRIKVNGKVGNLGEQITVSRD-KAKVLVSADTAFSKRYLKYLSKKYLKKQQLRDWLHVIASNKTAYELRYYNIHEQDA-EDEDE 132          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A0P6CMD3_9CRUS (60S ribosomal L22-like protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0P6CMD3_9CRUS)

HSP 1 Score: 151 bits (381), Expect = 7.220e-45
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   13 KVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINE-GEAADDEDE 375
            K KK++KK  + KFT+DC +P +D VLD  SFEKFLHDRIKVNGK G LG++V I+RD K KL + AA PFSKRYLKYL+KKYLKKQQLRDYL V+AS+K TYELRYF I++ G  ADD++E
Sbjct:    8 KNKKISKK-NVLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVNGKTGVLGDAVKISRD-KTKLYVAAAAPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKQTYELRYFNIHDAGNDADDDEE 127          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: F0W8Q5_9STRA (60S ribosomal protein L22 putative n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W8Q5_9STRA)

HSP 1 Score: 153 bits (386), Expect = 8.620e-45
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   34 KKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINEGEAADDEDE 375
            KK++ KFT+DC +P  DRVLD  SFEKFLHDRIKVNGKAG+LG+SVTI+R   AKL I + +PFSKRYLKYL+KKYLKKQQLRDYL V+AS++ +Y++RYF I++  A DD+DE
Sbjct:   78 KKQVLKFTVDCTIPVNDRVLDTSSFEKFLHDRIKVNGKAGDLGDSVTISRVN-AKLTIVSTIPFSKRYLKYLTKKYLKKQQLRDYLHVIASDRQSYQIRYFNIHDAGAGDDDDE 190          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: H3GXW9_PHYRM (Uncharacterized protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3GXW9_PHYRM)

HSP 1 Score: 150 bits (380), Expect = 9.630e-45
Identity = 81/126 (64.29%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    1 MAPPKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINE-GEAADDEDE 375
            MAP    K   KK++ KFT+DC +P +D VLD  SFEKFLHDRIKV GK G LGE++ I R+ K KL + A  PFSKRYLKYL+KKYLKKQQLRDYL V+AS+KNTYELRYF I++ G  AD++DE
Sbjct:    1 MAPAHKGKKVSKKQLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKVGGKTGVLGEAIKITRE-KTKLQVVAVPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKNTYELRYFNIHDAGNDADEDDE 125          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A7S0E0Z6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E0Z6_9EUKA)

HSP 1 Score: 150 bits (379), Expect = 1.290e-44
Identity = 76/124 (61.29%), Postives = 101/124 (81.45%), Query Frame = 1
Query:    1 MAPPKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINEGEAADDED 372
            MA  K KKV K+K+  KFT+DC  P +D ++D  SFEKFL DRIKV+GK GNLG+ VT++RD KAK+ + + +PFSKRYLKYLSKKYLKKQQLRD+L V+A++K++YELRY+ I++ +A +DED
Sbjct:    1 MAIKKAKKVVKRKQTLKFTVDCSQPVDDGIMDAASFEKFLQDRIKVSGKTGNLGDMVTVSRD-KAKVTVASDIPFSKRYLKYLSKKYLKKQQLRDWLHVIANSKSSYELRYYNIHDQDADEDED 123          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A0N7L406_PLAHL (60s ribosomal protein l22 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L406_PLAHL)

HSP 1 Score: 150 bits (378), Expect = 2.000e-44
Identity = 85/128 (66.41%), Postives = 102/128 (79.69%), Query Frame = 1
Query:    1 MAP--PKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINE-GEAADDEDE 375
            MAP   K KK++KK ++ KFT+DC +P +D VLD  SFEKFLHDRIK+NGK G LGESV I R+ K KL I A  PFSKRYLKYL+KKYLKKQQLRDYL V+AS+K+TYELRYF I++ G  AD++DE
Sbjct:    1 MAPIQQKGKKISKK-QLLKFTIDCTIPVDDHVLDPASFEKFLHDRIKINGKTGVLGESVKITRE-KTKLQIVAMPPFSKRYLKYLTKKYLKKQQLRDYLHVIASDKSTYELRYFNIHDAGNDADEDDE 126          
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Match: A0A024GCE7_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GCE7_9STRA)

HSP 1 Score: 150 bits (378), Expect = 2.490e-44
Identity = 80/129 (62.02%), Postives = 104/129 (80.62%), Query Frame = 1
Query:    4 APPKV-----KKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKAGNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVVASNKNTYELRYFRINEGEAADDEDE 375
            +PPK+     KK++KK ++ KFT+DC +P  DRVLD  SFEKFLHDRIKVNGKAG LG+SVTI+R   AKL I + +PFSKRYLKYL+KKYLKKQQLRDYL V+AS++ +Y++RYF I++  A +++DE
Sbjct:    7 SPPKIVPNNGKKLSKK-QVLKFTVDCTIPVNDRVLDTSSFEKFLHDRIKVNGKAGVLGDSVTISR-ANAKLTIVSTIPFSKRYLKYLTKKYLKKQQLRDYLHVIASDRQSYQIRYFNIHDVGAGEEDDE 133          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14820.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L046_9PHAE4.060e-4870.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
M4BIK4_HYAAE5.020e-4766.93Uncharacterized protein n=7 Tax=Peronosporaceae Ta... [more]
A0A8D1CLN3_PIG1.570e-4568.60Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A0M0K115_9EUKA2.080e-4565.2960s ribosomal protein l22 n=1 Tax=Chrysochromulina... [more]
A0A0P6CMD3_9CRUS7.220e-4567.2160S ribosomal L22-like protein n=2 Tax=Eukaryota T... [more]
F0W8Q5_9STRA8.620e-4567.5460S ribosomal protein L22 putative n=2 Tax=Albugo ... [more]
H3GXW9_PHYRM9.630e-4564.29Uncharacterized protein n=17 Tax=Peronosporaceae T... [more]
A0A7S0E0Z6_9EUKA1.290e-4461.29Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A0N7L406_PLAHL2.000e-4466.4160s ribosomal protein l22 n=1 Tax=Plasmopara halst... [more]
A0A024GCE7_9STRA2.490e-4462.02Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14820contigP-wetherbeei_contig14820:535..912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog272952.HpaP806230
PFAMsRibosomal_L22e
Model size378
Max annot lvl4776|Peronosporales
KEGG koko:K02891
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.24e-48
EggNOG OGsKOG3434@1|root,KOG3434@2759|Eukaryota,3QFG2@4776|Peronosporales
DescriptionRibosomal L22e protein family
Cds size378
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.5833755-CDS-P-wetherbeei_contig14820:534..9121683186034.5833755-CDS-P-wetherbeei_contig14820:534..912Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14820 535..912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14820.1.1prot_P-wetherbeei_contig14820.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14820 535..912 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14820.1.1

>prot_P-wetherbeei_contig14820.1.1 ID=prot_P-wetherbeei_contig14820.1.1|Name=mRNA_P-wetherbeei_contig14820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
MAPPKVKKVTKKKEIKKFTLDCHVPCEDRVLDMGSFEKFLHDRIKVNGKA
GNLGESVTIARDGKAKLVIQAAMPFSKRYLKYLSKKYLKKQQLRDYLRVV
ASNKNTYELRYFRINEGEAADDEDE*
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mRNA from alignment at P-wetherbeei_contig14820:535..912+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14820.1.1 ID=mRNA_P-wetherbeei_contig14820.1.1|Name=mRNA_P-wetherbeei_contig14820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig14820:535..912+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGCCGAAGGTAAAGAAGGTGACCAAGAAGAAGGAGATCAAGAA ATTCACTCTGGACTGCCATGTCCCGTGCGAAGACAGAGTTCTGGACATGG GCTCCTTCGAGAAATTTCTGCATGACCGCATCAAGGTCAACGGCAAGGCG GGCAACCTCGGGGAGTCGGTCACCATCGCCCGGGATGGCAAGGCCAAGCT GGTGATCCAAGCGGCCATGCCGTTCTCCAAGCGGTACCTCAAATACCTCT CCAAGAAGTACCTGAAGAAGCAGCAGCTGCGCGACTACCTGCGTGTCGTT GCCAGCAACAAGAACACGTATGAGCTGCGCTACTTCCGCATCAATGAGGG CGAGGCCGCGGATGACGAAGACGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14820:535..912+

>mRNA_P-wetherbeei_contig14820.1.1 ID=mRNA_P-wetherbeei_contig14820.1.1|Name=mRNA_P-wetherbeei_contig14820.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig14820:535..912+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCCGCCGAAGGTAAAGAAGGTGACCAAGAAGAAGGAGATCAAGAA
ATTCACTCTGGACTGCCATGTCCCGTGCGAAGACAGAGTTCTGGACATGG
GCTCCTTCGAGAAATTTCTGCATGACCGCATCAAGGTCAACGGCAAGGCG
GGCAACCTCGGGGAGTCGGTCACCATCGCCCGGGATGGCAAGGCCAAGCT
GGTGATCCAAGCGGCCATGCCGTTCTCCAAGCGGTACCTCAAATACCTCT
CCAAGAAGTACCTGAAGAAGCAGCAGCTGCGCGACTACCTGCGTGTCGTT
GCCAGCAACAAGAACACGTATGAGCTGCGCTACTTCCGCATCAATGAGGG
CGAGGCCGCGGATGACGAAGACGAGTGA
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