mRNA_P-wetherbeei_contig1482.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1482.1.1
Unique NamemRNA_P-wetherbeei_contig1482.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1482.1.1 vs. uniprot
Match: A0A7S1TQ68_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQ68_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.150e-20
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 1 
Query:    1 FSATNPNGFYRLRLSDPYDRSIARQLQRLAYSQSGECWRGERLNGQPFHFPEEDPTAWRLPPDGLLEL 204
            F    PNGFYRL LS  YDR +A QLQ LAYSQ GECWRGE+L+G+ F FPE+  + W +P  G+LEL
Sbjct:  556 FDPQEPNGFYRLDLSSDYDRMVALQLQELAYSQGGECWRGEKLDGKLFDFPEDPNSGWEVPHQGILEL 623
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1482.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1TQ68_9STRA1.150e-2060.29Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1482contigP-wetherbeei_contig1482:518..727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FZM5
PFAMsLRR_6
Model size210
Max annot lvl2759|Eukaryota
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.64e-16
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size210
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.4863477-CDS-P-wetherbeei_contig1482:517..7271683186034.4863477-CDS-P-wetherbeei_contig1482:517..727Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1482 518..727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1482.1.1prot_P-wetherbeei_contig1482.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1482 518..727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1482.1.1

>prot_P-wetherbeei_contig1482.1.1 ID=prot_P-wetherbeei_contig1482.1.1|Name=mRNA_P-wetherbeei_contig1482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
FSATNPNGFYRLRLSDPYDRSIARQLQRLAYSQSGECWRGERLNGQPFHF
PEEDPTAWRLPPDGLLELT*
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mRNA from alignment at P-wetherbeei_contig1482:518..727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1482.1.1 ID=mRNA_P-wetherbeei_contig1482.1.1|Name=mRNA_P-wetherbeei_contig1482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig1482:518..727- (Phaeothamnion wetherbeei SAG_119_79)
TTCAGCGCCACCAACCCGAACGGCTTCTACCGACTGCGGCTTTCCGACCC
GTACGACCGCTCTATCGCGCGCCAGCTGCAGCGGCTGGCGTATTCTCAGA
GCGGCGAGTGCTGGCGGGGCGAGCGGCTCAACGGCCAGCCATTCCACTTC
CCTGAGGAGGACCCAACGGCATGGCGGCTGCCGCCAGACGGCCTGCTCGA
GCTGACGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1482:518..727-

>mRNA_P-wetherbeei_contig1482.1.1 ID=mRNA_P-wetherbeei_contig1482.1.1|Name=mRNA_P-wetherbeei_contig1482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig1482:518..727- (Phaeothamnion wetherbeei SAG_119_79)
TTCAGCGCCACCAACCCGAACGGCTTCTACCGACTGCGGCTTTCCGACCC
GTACGACCGCTCTATCGCGCGCCAGCTGCAGCGGCTGGCGTATTCTCAGA
GCGGCGAGTGCTGGCGGGGCGAGCGGCTCAACGGCCAGCCATTCCACTTC
CCTGAGGAGGACCCAACGGCATGGCGGCTGCCGCCAGACGGCCTGCTCGA
GCTGACGTGA
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