mRNA_P-wetherbeei_contig14815.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14815.1.1
Unique NamemRNA_P-wetherbeei_contig14815.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14815.1.1 vs. uniprot
Match: A0A514WM23_9SPHN (CHAT domain-containing protein n=2 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A514WM23_9SPHN)

HSP 1 Score: 58.9 bits (141), Expect = 6.270e-6
Identity = 42/99 (42.42%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  655 LELATVTEL-LGLVRTQQGRPADALDFYRQALAAMEAHLGSEHPRTADVLARLTATLEAAGLYAEAEPLARRTLEARVRNLGPSHRDVSASRIVLANCL 948
            +EL TV  + L  +  Q G  A A+   R A    EAHLGSEH  T   L +L A L   GLY +A P+ RRTL+ RV+ L   H D++ S   LA  L
Sbjct:  174 VELPTVAGITLASIEMQAGDSASAVAAARGAALWAEAHLGSEHRLTLAALNQLGAALNDGGLYGQATPILRRTLDLRVKLLPRDHPDIAYSLNALAFAL 272
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BLAST of mRNA_P-wetherbeei_contig14815.1.1 vs. uniprot
Match: UPI0018AF5456 (CHAT domain-containing protein n=1 Tax=Novosphingobium jiangmenense TaxID=2791981 RepID=UPI0018AF5456)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-5
Identity = 32/81 (39.51%), Postives = 47/81 (58.02%), Query Frame = 1 
Query:  682 LGLVRTQQGRPADALDFYRQALAAMEAHLGSEHPRTADVLARLTATLEAAGLYAEAEPLARRTLEARVRNLGPSHRDVSAS 924
            L  +  Q G  A +++  R+A    E HLG +H  T   L +L A+L  +GLYA+A P+ RRTL+ RV+   P H D++ S
Sbjct:  209 LAALLIQSGDTASSIEPAREAAVWAETHLGEDHRVTMAALNQLGASLSDSGLYAQAIPVIRRTLDLRVKAYPPGHTDIAFS 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14815.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A514WM23_9SPHN6.270e-642.42CHAT domain-containing protein n=2 Tax=Sphingomona... [more]
UPI0018AF54566.210e-539.51CHAT domain-containing protein n=1 Tax=Novosphingo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14815contigP-wetherbeei_contig14815:1..1071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1297742.A176_03832
PFAMsTPR_10,TPR_12
Model size957
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000414
EggNOG OGsCOG0457@1|root,COG0515@1|root,COG0457@2|Bacteria,COG0515@2|Bacteria,1MWRF@1224|Proteobacteria,42P9S@68525|delta/epsilon subdivisions,2WJI7@28221|Deltaproteobacteria
DescriptionPFAM TPR repeat-containing protein
Cds size957
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186034.387416-CDS-P-wetherbeei_contig14815:0..8251683186034.387416-CDS-P-wetherbeei_contig14815:0..825Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14815 1..825 -
1683186034.39868-CDS-P-wetherbeei_contig14815:939..10711683186034.39868-CDS-P-wetherbeei_contig14815:939..1071Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14815 940..1071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14815.1.1prot_P-wetherbeei_contig14815.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14815 1..1071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14815.1.1

>prot_P-wetherbeei_contig14815.1.1 ID=prot_P-wetherbeei_contig14815.1.1|Name=mRNA_P-wetherbeei_contig14815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=319bp
QEASFGPNSPVLMGLLYDLGEAYLKLGRPAEAKAFLERSLVLQEATDGQA
VATLVVTLEKIGAEELASGLGVHAEGKFRTALVLRDQLGVSDPGGVAATS
QGLGRALNLQGRWEEAESVLRKSFELRSQLLGSESPVTIDTLFDLAECYR
GQRKFDAAESFLTRVADLRKRLVGPADISVGQSYRALGQLKIDSQNFALA
EEHLSKALDIFTASGASALELATVTELLGLVRTQQGRPADALDFYRQALA
AMEAHLGSEHPRTADVLARLTATLEAAGLYAEAEPLARRTLEARVRNLGP
SHRDVSASRIVLANCLTRQ
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mRNA from alignment at P-wetherbeei_contig14815:1..1071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14815.1.1 ID=mRNA_P-wetherbeei_contig14815.1.1|Name=mRNA_P-wetherbeei_contig14815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-wetherbeei_contig14815:1..1071- (Phaeothamnion wetherbeei SAG_119_79)
CAAGAAGCTTCGTTCGGTCCCAACAGCCCCGTTTTGATGGGCCTGCTCTA
CGATCTTGGCGAAGCTTACCTGAAATTGGGCCGCCCCGCGGAAGCCAAGG
CTTTCCTGGAGCGCTCTCTGGTTCTCCAGGAAGTTGCTGAAGACAGCCGC
CTGGGCAGCACTTTCTTCCTCCTGGCCGCGCTCGCCGCTCAGGCTGGCGA
CATCCGGCGCGCCGAGGAGCTGATTCAGCGCGGCATCGGCCTGGAGGCCA
CCGATGGCCAGGCCGTCGCGACTCTCGTGGTCACGCTGGAGAAGATCGGT
GCCGAAGAGCTAGCCAGCGGCCTGGGCGTTCACGCCGAGGGCAAGTTCCG
CACTGCTCTGGTGCTTCGCGATCAGCTTGGGGTGTCCGATCCTGGCGGAG
TCGCCGCCACCAGCCAGGGGTTGGGCCGCGCGCTCAATCTACAGGGTCGC
TGGGAGGAAGCCGAATCTGTTTTGCGCAAATCGTTCGAGCTGCGTTCCCA
GCTCCTGGGTTCCGAGAGCCCCGTGACGATTGACACGCTCTTTGACCTGG
CCGAGTGTTATCGCGGCCAGCGCAAGTTTGACGCCGCCGAGTCCTTCCTG
ACGCGCGTGGCCGATCTGCGTAAACGCCTGGTGGGACCCGCCGACATCAG
TGTCGGCCAGAGCTACCGCGCTCTGGGCCAACTCAAGATCGACAGCCAGA
ACTTTGCCCTGGCCGAGGAGCACTTGAGTAAAGCCCTGGACATTTTCACC
GCCAGTGGAGCCTCGGCGCTCGAACTCGCCACCGTCACCGAATTGCTAGG
CCTCGTGCGAACCCAGCAAGGACGTCCCGCTGACGCCCTGGACTTCTACC
GCCAGGCGCTGGCCGCCATGGAGGCCCATCTGGGCAGTGAGCATCCGCGC
ACGGCCGACGTGCTGGCGCGCCTGACCGCGACCCTGGAAGCTGCTGGTCT
TTACGCCGAGGCAGAACCGCTCGCGCGCCGTACGCTGGAAGCGCGGGTTC
GCAATCTTGGCCCCAGCCATCGCGACGTGTCGGCGAGCCGCATCGTGCTG
GCCAATTGTCTGACTCGCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14815:1..1071-

>mRNA_P-wetherbeei_contig14815.1.1 ID=mRNA_P-wetherbeei_contig14815.1.1|Name=mRNA_P-wetherbeei_contig14815.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=957bp|location=Sequence derived from alignment at P-wetherbeei_contig14815:1..1071- (Phaeothamnion wetherbeei SAG_119_79)
CAAGAAGCTTCGTTCGGTCCCAACAGCCCCGTTTTGATGGGCCTGCTCTA
CGATCTTGGCGAAGCTTACCTGAAATTGGGCCGCCCCGCGGAAGCCAAGG
CTTTCCTGGAGCGCTCTCTGGTTCTCCAGGAAGCCACCGATGGCCAGGCC
GTCGCGACTCTCGTGGTCACGCTGGAGAAGATCGGTGCCGAAGAGCTAGC
CAGCGGCCTGGGCGTTCACGCCGAGGGCAAGTTCCGCACTGCTCTGGTGC
TTCGCGATCAGCTTGGGGTGTCCGATCCTGGCGGAGTCGCCGCCACCAGC
CAGGGGTTGGGCCGCGCGCTCAATCTACAGGGTCGCTGGGAGGAAGCCGA
ATCTGTTTTGCGCAAATCGTTCGAGCTGCGTTCCCAGCTCCTGGGTTCCG
AGAGCCCCGTGACGATTGACACGCTCTTTGACCTGGCCGAGTGTTATCGC
GGCCAGCGCAAGTTTGACGCCGCCGAGTCCTTCCTGACGCGCGTGGCCGA
TCTGCGTAAACGCCTGGTGGGACCCGCCGACATCAGTGTCGGCCAGAGCT
ACCGCGCTCTGGGCCAACTCAAGATCGACAGCCAGAACTTTGCCCTGGCC
GAGGAGCACTTGAGTAAAGCCCTGGACATTTTCACCGCCAGTGGAGCCTC
GGCGCTCGAACTCGCCACCGTCACCGAATTGCTAGGCCTCGTGCGAACCC
AGCAAGGACGTCCCGCTGACGCCCTGGACTTCTACCGCCAGGCGCTGGCC
GCCATGGAGGCCCATCTGGGCAGTGAGCATCCGCGCACGGCCGACGTGCT
GGCGCGCCTGACCGCGACCCTGGAAGCTGCTGGTCTTTACGCCGAGGCAG
AACCGCTCGCGCGCCGTACGCTGGAAGCGCGGGTTCGCAATCTTGGCCCC
AGCCATCGCGACGTGTCGGCGAGCCGCATCGTGCTGGCCAATTGTCTGAC
TCGCCAG
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