mRNA_P-wetherbeei_contig14786.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14786.1.1
Unique NamemRNA_P-wetherbeei_contig14786.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14786.1.1 vs. uniprot
Match: A0A6H5JRP3_9PHAE (GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRP3_9PHAE)

HSP 1 Score: 134 bits (336), Expect = 5.630e-30
Identity = 97/267 (36.33%), Postives = 131/267 (49.06%), Query Frame = 1 
Query:  457 AAAWRLLGWLRALARGMWRRRLVLA-VGVVFWW--AQALPRMSRPGTIYFEHFTKQCIRRPGGGFLSALMGRPDRLAGACGENEHFRPVATGIYVEAFRQYKVCLQTAGGRYLSLAPDKFASSCVPENQFVFLRPPVDYPGGTSDIALASGTGTLQGSRGGSXXXXXXXXXXXXXEFCLYNPMLGLYLNARGRGRAQCGAAERWRI--APVVP-----------PGPDVRMVVDNTAAMLHPHFASRAPVAAILTYLGVSAVLLHGR 1209
            A  W  + W++ L    W RR V A + ++  W  + A  R + P   +FE + + C+    G F+ A  G+  RL+  CG  +  RPVATG Y EAFRQ KVCL+ AGG +L+L     A +C+PE QFVF           +   L+S      GS GG              E+C+YNP  G YL+A+GR RAQCGA E WR+  AP+ P            G          +A+LHP+F SRAP+     YL  +  LL  R
Sbjct: 1033 AQRWSAVSWIKKLT---WHRRRVAAGIALLVLWKVSSANLRPASPAR-HFEKYGQSCLESQAG-FVEA-GGK--RLSRVCGAEQALRPVATGAYFEAFRQDKVCLEVAGGGFLTLGRVHVAQACLPEFQFVFQE--------VAPTKLSS-KDKGDGSGGGGRLVVGGGTAAESVEYCIYNPASGFYLSAQGRPRAQCGAMEHWRVRAAPLAPGLKGGGGSLAGSGGTSTKAKSAFSALLHPNFLSRAPLLTFYGYLLAATALLVAR 1282
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14786.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRP3_9PHAE5.630e-3036.33GT8 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14786contigP-wetherbeei_contig14786:280..1575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1298
Hectar predicted targeting categorysignal peptide
Exons1
Cds size1296
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.3679008-CDS-P-wetherbeei_contig14786:279..15751683186033.3679008-CDS-P-wetherbeei_contig14786:279..1575Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14786 280..1575 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14786.1.1prot_P-wetherbeei_contig14786.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14786 280..1575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14786.1.1

>prot_P-wetherbeei_contig14786.1.1 ID=prot_P-wetherbeei_contig14786.1.1|Name=mRNA_P-wetherbeei_contig14786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=432bp
MHGCRAWRSRLRLSSKAHYKWLTASCAVCAAVACAACWAATAPADGLGGG
GAVHRFHRFVALCHVALVALVYASMVGGDRLRRDLASTAAPRPVAVTAEA
FPLHGPTGGGLWRRSSSSGGAGESGSESCRGEVQPVPPHAVSGGGLRSLL
SLAAAWRLLGWLRALARGMWRRRLVLAVGVVFWWAQALPRMSRPGTIYFE
HFTKQCIRRPGGGFLSALMGRPDRLAGACGENEHFRPVATGIYVEAFRQY
KVCLQTAGGRYLSLAPDKFASSCVPENQFVFLRPPVDYPGGTSDIALASG
TGTLQGSRGGSGGGNEEEVVAAEEEFCLYNPMLGLYLNARGRGRAQCGAA
ERWRIAPVVPPGPDVRMVVDNTAAMLHPHFASRAPVAAILTYLGVSAVLL
HGRGWLAGGRRRSPPPPRWLPRLLPAKWLRAA
back to top

mRNA from alignment at P-wetherbeei_contig14786:280..1575-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14786.1.1 ID=mRNA_P-wetherbeei_contig14786.1.1|Name=mRNA_P-wetherbeei_contig14786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig14786:280..1575- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCTGTCGCGCGTGGAGGTCGCGGCTGCGTCTTTCGAGCAAGGC
GCACTACAAGTGGCTCACGGCGTCGTGCGCCGTCTGCGCCGCCGTCGCCT
GCGCCGCCTGCTGGGCGGCTACGGCGCCGGCCGATGGCCTCGGCGGCGGC
GGCGCCGTCCACCGTTTCCACCGTTTTGTTGCGCTGTGCCACGTCGCGCT
GGTGGCGCTCGTCTACGCGTCGATGGTCGGCGGCGACCGCCTGCGCAGGG
ACCTAGCATCGACGGCGGCGCCGCGGCCGGTGGCGGTGACGGCGGAGGCC
TTCCCACTGCACGGGCCGACTGGCGGAGGCTTGTGGCGGCGCAGCAGCAG
CTCCGGCGGCGCCGGTGAGAGCGGCAGCGAAAGCTGTCGTGGCGAGGTGC
AACCGGTTCCGCCGCACGCGGTCAGCGGCGGCGGTCTGCGGAGCCTGCTC
TCGTTGGCGGCAGCATGGCGGCTGTTGGGGTGGCTGCGCGCGCTGGCGCG
GGGCATGTGGCGGCGGCGCCTCGTGCTGGCCGTCGGCGTCGTCTTTTGGT
GGGCGCAGGCGTTGCCGCGCATGTCGCGGCCCGGCACCATCTATTTTGAG
CACTTCACCAAGCAGTGCATCCGGCGGCCTGGTGGCGGCTTTCTGTCAGC
CTTGATGGGCCGTCCGGACCGCCTGGCCGGCGCCTGCGGGGAAAATGAGC
ACTTCCGGCCGGTGGCGACCGGCATCTACGTCGAGGCATTCCGTCAGTAC
AAGGTCTGCCTACAGACCGCCGGCGGCCGTTACCTGTCGCTGGCACCGGA
CAAGTTTGCATCGAGCTGCGTGCCCGAGAACCAGTTCGTCTTTCTGCGGC
CCCCGGTCGACTACCCCGGCGGCACCAGTGACATCGCTTTGGCGAGCGGC
ACCGGCACGTTGCAGGGGTCACGCGGAGGAAGCGGCGGCGGCAATGAGGA
GGAAGTGGTGGCGGCGGAGGAGGAGTTTTGCCTGTACAACCCCATGCTGG
GGCTATACCTGAATGCGCGAGGGCGCGGACGGGCGCAGTGCGGAGCGGCG
GAGCGCTGGCGGATCGCGCCGGTCGTCCCGCCGGGACCGGATGTCCGGAT
GGTGGTTGACAACACGGCGGCCATGCTGCACCCGCACTTCGCCAGCCGCG
CCCCCGTGGCGGCGATCCTCACCTACCTGGGCGTGTCGGCCGTGCTCCTC
CACGGCCGCGGCTGGCTGGCCGGTGGCCGTCGCCGTTCGCCGCCACCGCC
GCGCTGGCTGCCGCGGCTGCTACCGGCAAAGTGGCTCCGGGCCGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14786:280..1575-

>mRNA_P-wetherbeei_contig14786.1.1 ID=mRNA_P-wetherbeei_contig14786.1.1|Name=mRNA_P-wetherbeei_contig14786.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1296bp|location=Sequence derived from alignment at P-wetherbeei_contig14786:280..1575- (Phaeothamnion wetherbeei SAG_119_79)
ATGCACGGCTGTCGCGCGTGGAGGTCGCGGCTGCGTCTTTCGAGCAAGGC
GCACTACAAGTGGCTCACGGCGTCGTGCGCCGTCTGCGCCGCCGTCGCCT
GCGCCGCCTGCTGGGCGGCTACGGCGCCGGCCGATGGCCTCGGCGGCGGC
GGCGCCGTCCACCGTTTCCACCGTTTTGTTGCGCTGTGCCACGTCGCGCT
GGTGGCGCTCGTCTACGCGTCGATGGTCGGCGGCGACCGCCTGCGCAGGG
ACCTAGCATCGACGGCGGCGCCGCGGCCGGTGGCGGTGACGGCGGAGGCC
TTCCCACTGCACGGGCCGACTGGCGGAGGCTTGTGGCGGCGCAGCAGCAG
CTCCGGCGGCGCCGGTGAGAGCGGCAGCGAAAGCTGTCGTGGCGAGGTGC
AACCGGTTCCGCCGCACGCGGTCAGCGGCGGCGGTCTGCGGAGCCTGCTC
TCGTTGGCGGCAGCATGGCGGCTGTTGGGGTGGCTGCGCGCGCTGGCGCG
GGGCATGTGGCGGCGGCGCCTCGTGCTGGCCGTCGGCGTCGTCTTTTGGT
GGGCGCAGGCGTTGCCGCGCATGTCGCGGCCCGGCACCATCTATTTTGAG
CACTTCACCAAGCAGTGCATCCGGCGGCCTGGTGGCGGCTTTCTGTCAGC
CTTGATGGGCCGTCCGGACCGCCTGGCCGGCGCCTGCGGGGAAAATGAGC
ACTTCCGGCCGGTGGCGACCGGCATCTACGTCGAGGCATTCCGTCAGTAC
AAGGTCTGCCTACAGACCGCCGGCGGCCGTTACCTGTCGCTGGCACCGGA
CAAGTTTGCATCGAGCTGCGTGCCCGAGAACCAGTTCGTCTTTCTGCGGC
CCCCGGTCGACTACCCCGGCGGCACCAGTGACATCGCTTTGGCGAGCGGC
ACCGGCACGTTGCAGGGGTCACGCGGAGGAAGCGGCGGCGGCAATGAGGA
GGAAGTGGTGGCGGCGGAGGAGGAGTTTTGCCTGTACAACCCCATGCTGG
GGCTATACCTGAATGCGCGAGGGCGCGGACGGGCGCAGTGCGGAGCGGCG
GAGCGCTGGCGGATCGCGCCGGTCGTCCCGCCGGGACCGGATGTCCGGAT
GGTGGTTGACAACACGGCGGCCATGCTGCACCCGCACTTCGCCAGCCGCG
CCCCCGTGGCGGCGATCCTCACCTACCTGGGCGTGTCGGCCGTGCTCCTC
CACGGCCGCGGCTGGCTGGCCGGTGGCCGTCGCCGTTCGCCGCCACCGCC
GCGCTGGCTGCCGCGGCTGCTACCGGCAAAGTGGCTCCGGGCCGCC
back to top