mRNA_P-wetherbeei_contig14776.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14776.1.1
Unique NamemRNA_P-wetherbeei_contig14776.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: A0A6H5JSJ2_9PHAE (CobW C-terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ2_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.230e-28
Identity = 55/97 (56.70%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPEL 291
            HL+ DGL QVTFTS  P  L+RFQDW+   +PAGVVR KGV+AF E+ L R++ N+SGRRRLSFE DG W+GP++++ V+IG  MD   V   L  L
Sbjct:  320 HLRDDGLEQVTFTSSLPLSLARFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGMWQGPMSLYLVVIGVGMDRVGVLSALEGL 416
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: D8LTM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTM2_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 3.650e-21
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:   61 SRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPEL 291
            SRFQDW+   +PAGVVR KGV+AF E+ L R++ N+SGRRRLSFE DG W+GP+++H V+IG  MD A V   L  L
Sbjct:  283 SRFQDWVCHGMPAGVVRVKGVLAFDEDRLTRSVFNMSGRRRLSFETDGVWQGPMSLHLVVIGVGMDRAGVLSALEGL 359
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: UPI001F5536CE (GTP-binding protein n=2 Tax=Phormidium tenue TaxID=126344 RepID=UPI001F5536CE)

HSP 1 Score: 77.8 bits (190), Expect = 1.160e-14
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELC 294
            HL+ DG T V+F SDRPF + +FQ +L  ++P  V RAKG++ F E P  R I +LSG+R  S + D +W+G      VLIG+ +D AA+ ++L E C
Sbjct:  276 HLEIDGFTSVSFQSDRPFAIKKFQHFLDTQLPESVFRAKGILWFDESP-KRHIFHLSGKR-FSLD-DEQWKGQPKNQVVLIGQNLDHAALKKQL-EAC 369
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: UPI0018EFCDA9 (GTP-binding protein n=2 Tax=Leptolyngbya TaxID=47251 RepID=UPI0018EFCDA9)

HSP 1 Score: 77.0 bits (188), Expect = 2.210e-14
Identity = 43/98 (43.88%), Postives = 59/98 (60.20%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELC 294
            HL+ DG T V+F SDRPF + +FQD+L  ++PA V RAKG++ F E P  R I +LSG+R      D  W+G      VLIG+ +D   +  +L E C
Sbjct:  276 HLEVDGFTSVSFQSDRPFSIRKFQDFLDNQLPASVFRAKGILWFEESP-KRHIFHLSGKRFTL--DDSEWKGTHKNQVVLIGQNLDHDQLRSQL-EAC 369
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: A0A1Q8Z829_9CYAN (Cobalamin biosynthesis protein CobW n=1 Tax=Leptolyngbya sp. 'hensonii' TaxID=1922337 RepID=A0A1Q8Z829_9CYAN)

HSP 1 Score: 76.6 bits (187), Expect = 3.040e-14
Identity = 41/100 (41.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELCAG 300
            HL+ DG T ++F SD+PF + +FQ++L  ++P  V RAKG++ F E P  R I +LSG+R    + D  W+G      VLIG+ +D A +  +L E C G
Sbjct:  278 HLEMDGFTSISFQSDKPFAIKKFQNFLDHQLPESVFRAKGILWFDESP-RRHIFHLSGKRFTMDDED--WKGQPKNQLVLIGQNLDHATLRAQL-EACLG 373
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: A0A2D2Q0C5_THELV (Cobalamin biosynthesis protein CobW n=2 Tax=Thermostichus lividus TaxID=33070 RepID=A0A2D2Q0C5_THELV)

HSP 1 Score: 75.9 bits (185), Expect = 5.280e-14
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELCAGSD 306
            HL+ DG T V+F SDRPF L +FQ +L  ++P  V RAKG++ F+E P  R + +LSG+R    + D  W+G      VLIG+++D A +  +L E    ++
Sbjct:  262 HLEEDGFTSVSFESDRPFELRKFQYFLDHQLPETVFRAKGILWFKESP-RRHVFHLSGKRFSLDDED--WKGTPKNQLVLIGQQLDHATLLAQLSECVTAAE 360
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: A0A8J7Z7K0_9CYAN (GTP-binding protein n=2 Tax=Myxacorys TaxID=2056239 RepID=A0A8J7Z7K0_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 7.610e-14
Identity = 40/90 (44.44%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAV 270
            HL+ DG T ++F SDRPF + +FQ +L  ++PA V RAKG++ F E P  R I +LSG+R  S + D  W+G      VLIG+ +D  A+
Sbjct:  267 HLEVDGFTSISFESDRPFSIRKFQHFLDNQLPASVFRAKGILWFEESP-KRHIFHLSGKR-FSLDDD-EWKGTPKNQLVLIGQNLDKEAL 353
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: A0A0C1Y8R4_9CYAN (Cobalamin biosynthesis protein CobW n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A0C1Y8R4_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 7.890e-14
Identity = 43/102 (42.16%), Postives = 62/102 (60.78%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPE-LCAGS 303
            HL  DG T ++F SDRPF + +FQ +L  ++P  + RAKG++ F E P  R I +LSG+R  S + D +W+G      VLIG+ +D AA+  +L   LC  S
Sbjct:  277 HLAIDGFTSISFESDRPFAIRKFQHFLDNQLPENIFRAKGILWFDESP-KRHIFHLSGKR-FSLDDD-QWKGEPKNQLVLIGQNLDHAALREQLNNCLCLPS 375
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: V5V7P9_9CYAN (GTP-dependent nickel-binding protein YjiA n=8 Tax=Cyanobacteria TaxID=1117 RepID=V5V7P9_9CYAN)

HSP 1 Score: 75.1 bits (183), Expect = 9.390e-14
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRL 282
            HL+ DG T V+F SDRPF L +FQ +L  ++P  V RAKG++ F+E P  R + +LSG+R  S + D  W+G      VLIG+ +D A +  +L
Sbjct:  254 HLEEDGFTSVSFQSDRPFELRKFQYFLDHQLPQSVFRAKGILWFKESP-RRHVFHLSGKR-FSLD-DEEWKGDRKNQLVLIGQNLDHATLLNQL 344
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BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Match: K9YR80_DACSA (Putative GTPase, G3E family n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YR80_DACSA)

HSP 1 Score: 75.1 bits (183), Expect = 9.440e-14
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 1 
Query:    1 HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLARAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELCA 297
            HL  DG   ++F SD+PF + +FQ +L  E+P  V RAKG++ F E P  R I +LSG+R  S E D  W+G  +   VLIG+ +D A + ++L +  A
Sbjct:  254 HLDNDGFVSLSFQSDKPFSIRKFQSFLDNELPESVFRAKGILWFEESP-DRHIFHLSGKR-FSIEDDD-WKGEPSNQLVLIGQNLDLATLQKQLEDCLA 349
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14776.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSJ2_9PHAE4.230e-2856.70CobW C-terminal domain-containing protein n=1 Tax=... [more]
D8LTM2_ECTSI3.650e-2158.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001F5536CE1.160e-1444.90GTP-binding protein n=2 Tax=Phormidium tenue TaxID... [more]
UPI0018EFCDA92.210e-1443.88GTP-binding protein n=2 Tax=Leptolyngbya TaxID=472... [more]
A0A1Q8Z829_9CYAN3.040e-1441.00Cobalamin biosynthesis protein CobW n=1 Tax=Leptol... [more]
A0A2D2Q0C5_THELV5.280e-1440.20Cobalamin biosynthesis protein CobW n=2 Tax=Thermo... [more]
A0A8J7Z7K0_9CYAN7.610e-1444.44GTP-binding protein n=2 Tax=Myxacorys TaxID=205623... [more]
A0A0C1Y8R4_9CYAN7.890e-1442.16Cobalamin biosynthesis protein CobW n=4 Tax=Cyanob... [more]
V5V7P9_9CYAN9.390e-1443.62GTP-dependent nickel-binding protein YjiA n=8 Tax=... [more]
K9YR80_DACSA9.440e-1441.41Putative GTPase, G3E family n=2 Tax=Cyanobacteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14776contigP-wetherbeei_contig14776:46..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LTM2
PFAMsCobW_C,cobW
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.98e-22
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-28_003570.2
DescriptionATP binding
Cds size312
COG categoryF
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186033.2002819-CDS-P-wetherbeei_contig14776:45..2391683186033.2002819-CDS-P-wetherbeei_contig14776:45..239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14776 46..239 -
1683186033.2088578-CDS-P-wetherbeei_contig14776:549..6671683186033.2088578-CDS-P-wetherbeei_contig14776:549..667Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14776 550..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14776.1.1prot_P-wetherbeei_contig14776.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14776 46..667 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14776.1.1

>prot_P-wetherbeei_contig14776.1.1 ID=prot_P-wetherbeei_contig14776.1.1|Name=mRNA_P-wetherbeei_contig14776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
HLQADGLTQVTFTSDRPFVLSRFQDWLAREIPAGVVRAKGVVAFREEPLA
RAIVNLSGRRRLSFEPDGRWEGPIAMHFVLIGRRMDAAAVARRLPELCAG
SDG*
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mRNA from alignment at P-wetherbeei_contig14776:46..667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14776.1.1 ID=mRNA_P-wetherbeei_contig14776.1.1|Name=mRNA_P-wetherbeei_contig14776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=622bp|location=Sequence derived from alignment at P-wetherbeei_contig14776:46..667- (Phaeothamnion wetherbeei SAG_119_79)
CACCTCCAGGCAGACGGCCTGACGCAGGTGACTTTTACGTCCGACCGGCC
GTTCGTGCTGAGCCGCTTCCAGGACTGGCTGGCGCGGGAGATTCCTGCCG
GGGTCGTGCGGGCGAAAGGTGAGTCGTTGTGTGGGGTGTTTTTGTACGGC
TGCTGGACAGATGCCACCATAGACAGAGAGGGCGCGTCGTGCTCGCAACA
GCGACGGCGCGGGTAGCGCCGTGTTATCTCTTCGCGTCTGTGCATGCTTC
TCTCTCGGTTGGTTTCCTGTGTGCAAAGCTGCGACAAAAACTTAACCGGC
CATTCTCCCCACCACGCTGAGCTTGCACAAGCGCCACGTCAACTCTTCGG
CTGCACCCGTGTGATCATCACTCCTCCTTACAAACCACTCACGGCTCAAT
GCATTGACGGCGCGGCTTCGTACGGCAGGCGTCGTGGCCTTCCGAGAAGA
ACCCCTTGCCCGCGCCATCGTCAACCTCAGCGGGCGGCGGCGCCTCAGCT
TCGAACCGGACGGCCGCTGGGAAGGCCCCATCGCCATGCACTTCGTACTC
ATCGGCCGCCGAATGGACGCGGCGGCCGTCGCCAGACGTCTGCCGGAGCT
GTGCGCAGGCAGCGACGGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14776:46..667-

>mRNA_P-wetherbeei_contig14776.1.1 ID=mRNA_P-wetherbeei_contig14776.1.1|Name=mRNA_P-wetherbeei_contig14776.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig14776:46..667- (Phaeothamnion wetherbeei SAG_119_79)
CACCTCCAGGCAGACGGCCTGACGCAGGTGACTTTTACGTCCGACCGGCC
GTTCGTGCTGAGCCGCTTCCAGGACTGGCTGGCGCGGGAGATTCCTGCCG
GGGTCGTGCGGGCGAAAGGCGTCGTGGCCTTCCGAGAAGAACCCCTTGCC
CGCGCCATCGTCAACCTCAGCGGGCGGCGGCGCCTCAGCTTCGAACCGGA
CGGCCGCTGGGAAGGCCCCATCGCCATGCACTTCGTACTCATCGGCCGCC
GAATGGACGCGGCGGCCGTCGCCAGACGTCTGCCGGAGCTGTGCGCAGGC
AGCGACGGGTGA
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