mRNA_P-wetherbeei_contig14763.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14763.1.1
Unique NamemRNA_P-wetherbeei_contig14763.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A2Z7AGM8_9LAMI (Integrase catalytic domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AGM8_9LAMI)

HSP 1 Score: 70.9 bits (172), Expect = 9.850e-13
Identity = 36/99 (36.36%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   22 QNTSADPRKGAETLQLWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAM 318
            ++T A    GA +  LWH RLGH  +  +  LMS  N ++P L     + CE+C+ GK  + + +   ++   ++LELVH+D++GP PV S  G+RY +
Sbjct:   19 RDTLAAVDAGANS-SLWHCRLGHMSEKGMKMLMS--NGKLPDLKSVEHKMCESCIFGKQRKVSFSKGGREPKAAKLELVHTDVWGPSPVPSLGGSRYYV 114          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A8J5Y992_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y992_9ROSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.040e-12
Identity = 36/89 (40.45%), Postives = 46/89 (51.69%), Query Frame = 1
Query:   55 ETLQLWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            E  +LWHQRLGH+    + R++S                CE C MGK  R    T    R  S+LELVHSD+ GP+   S +GNRY +L
Sbjct:  396 ENTKLWHQRLGHANFKSMARMVSKEMVENFTKSVQNENVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNRYFIL 484          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A4Y1R4D1_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4D1_PRUDU)

HSP 1 Score: 72.8 bits (177), Expect = 1.340e-12
Identity = 37/89 (41.57%), Postives = 52/89 (58.43%), Query Frame = 1
Query:   61 LQLWHQRLGHSGDHVLPRLMSDSNT--RVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            LQ WH+RLGHS +  + +L+ D      +P L+  +   CE C++GK HR +       R  S LELVH+DI GP+   S +GNRY +L
Sbjct:  407 LQTWHKRLGHSNERSI-KLLEDQGMVHGLPHLE-QISVVCEGCMLGKQHRDSFPLESTWRATSPLELVHTDICGPMKTESISGNRYFLL 493          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A4Y1QXI5_PRUDU (Multidrug resistance-associated protein 9 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QXI5_PRUDU)

HSP 1 Score: 72.8 bits (177), Expect = 1.420e-12
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   58 TLQLWHQRLGHSGDHVLPRLMSDSNTR-VPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            +LQ WH+RLGH  D  +  L +      +P L+ DL   CE C +GK HR +       R  S LELVH+DI GP+ + S + NRY +L
Sbjct:  470 SLQTWHKRLGHLNDQSIKMLANQDMVHGLPSLEKDLA-VCEGCKLGKQHRDSFPAESTWRAQSPLELVHTDICGPMQIASMSENRYFLL 557          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A2P6UZ15_9CHLO (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UZ15_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 3.330e-12
Identity = 46/113 (40.71%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   16 RIQNTSADPR-----KGAETLQLWHQRLGHSGDHVLPRLMSDSNT--RVPRLDFDL---RQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAMLV 324
            R+  TS  P      + AET  LWH+RLGH G   L + M D  T  RV R +F        CE C +GK HR   NT+    T + LEL+H+D+ GPLPV S  G+ Y   +
Sbjct:  330 RLAPTSGAPHTAYAARTAETPHLWHRRLGHLGFDNLAK-MPDMVTGIRVTRAEFKTAGANALCEPCTLGKQHRLPFNTSTSA-TKAPLELLHTDLCGPLPVASAGGSLYFNTI 440          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A3S3NIE3_9ACAR (Uncharacterized protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3NIE3_9ACAR)

HSP 1 Score: 71.2 bits (173), Expect = 4.860e-12
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 1
Query:    7 NLYRIQNT---SADPRKGAETLQLWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAM 318
            NLY  ++    +A+   G ET+QLWH RLGH  +  + +L ++    +   + D+   CE+CV GK+ R          T   LELVHSD+ GP+   + +G RY +
Sbjct:  174 NLYLFRSNYKETANKESGKETIQLWHHRLGHVSNEKIKQLANNDLLSINTCEKDV--LCESCVKGKTTRKPFPKKSDSMTKEVLELVHSDVCGPMQTNTVSGRRYFV 278          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A8J5XPH4_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5XPH4_9ROSI)

HSP 1 Score: 71.2 bits (173), Expect = 4.880e-12
Identity = 35/90 (38.89%), Postives = 47/90 (52.22%), Query Frame = 1
Query:   52 AETLQLWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            +E  +LWHQRLGH+    + +++S                CE C MGK  R    T    R  S+LELVHSD+ GP+   S +GNRY +L
Sbjct:  304 SEDSKLWHQRLGHANFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRASSKLELVHSDVCGPMRTESLSGNRYFIL 393          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A6J1BQC5_9ROSI (uncharacterized protein LOC110428874 n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1BQC5_9ROSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.880e-12
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:   55 ETLQLWHQRLGHSGDHVLPRLMSDS---NTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            +  +LWH RLGH  +  +  L         +  +LDF     CE C+ GK HR   +TA   RT   ++ +HSD++GP PV S++G+ Y ++
Sbjct:   32 DVTRLWHMRLGHMSEKGMTELSKHGLLCGQKTGKLDF-----CEHCIYGKQHRVKFSTATH-RTKCTVDYIHSDLWGPSPVASKSGSLYMLI 117          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A2I0I9B0_PUNGR (gag_pre-integrs domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I9B0_PUNGR)

HSP 1 Score: 67.0 bits (162), Expect = 5.710e-12
Identity = 35/87 (40.23%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   67 LWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAMLVN 327
            LWH RLGH  +  + +L S    ++P L       CE CV GK  R + + A +     +LELVHSD++GP PV S  G  Y M +N
Sbjct:   33 LWHCRLGHMSEKGMKQLCSKG--KLPGLKTVELGLCEDCVFGKQKRVSFSKAGRTLKEQKLELVHSDLWGPTPVTSLGGASYYMTLN 117          
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Match: A0A8J6D2N4_9ROSI (Integrase catalytic domain-containing protein n=2 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6D2N4_9ROSI)

HSP 1 Score: 70.9 bits (172), Expect = 6.570e-12
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   64 QLWHQRLGHSGDHVLPRLMSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSDIFGPLPVRSRTGNRYAML 321
            +LWHQRLGH+    + +++S                CE C MGK  R    T    R  S+LELVHSD+ GP+   S +GNRY +L
Sbjct:  458 KLWHQRLGHANFKSMAQMVSKEMVENFTKTVQSEDVCEVCQMGKQARLPFPTNTTWRATSKLELVHSDVCGPMRTESLSGNRYFIL 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14763.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7AGM8_9LAMI9.850e-1336.36Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5Y992_9ROSI1.040e-1240.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y1R4D1_PRUDU1.340e-1241.57Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A4Y1QXI5_PRUDU1.420e-1241.57Multidrug resistance-associated protein 9 n=1 Tax=... [more]
A0A2P6UZ15_9CHLO3.330e-1240.71Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A3S3NIE3_9ACAR4.860e-1234.58Uncharacterized protein (Fragment) n=1 Tax=Dinothr... [more]
A0A8J5XPH4_9ROSI4.880e-1238.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6J1BQC5_9ROSI4.880e-1234.78uncharacterized protein LOC110428874 n=1 Tax=Herra... [more]
A0A2I0I9B0_PUNGR5.710e-1240.23gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A8J6D2N4_9ROSI6.570e-1239.53Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14763contigP-wetherbeei_contig14763:100..449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog225117.XP_009356290.1
PFAMsDUF4219,Retrotran_gag_2,gag_pre-integrs,zf-CCHC
Model size350
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37ITA@33090|Viridiplantae,3GHQJ@35493|Streptophyta,4JTP0@91835|fabids
Descriptiongag-polypeptide of LTR copia-type
Cds size213
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.9666023-UTR-P-wetherbeei_contig14763:99..2161683186032.9666023-UTR-P-wetherbeei_contig14763:99..216Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14763 100..216 +
1683186032.9812644-UTR-P-wetherbeei_contig14763:429..4491683186032.9812644-UTR-P-wetherbeei_contig14763:429..449Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14763 430..449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.9743354-CDS-P-wetherbeei_contig14763:216..4291683186032.9743354-CDS-P-wetherbeei_contig14763:216..429Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14763 217..429 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14763.1.1prot_P-wetherbeei_contig14763.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14763 217..429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14763.1.1

>prot_P-wetherbeei_contig14763.1.1 ID=prot_P-wetherbeei_contig14763.1.1|Name=mRNA_P-wetherbeei_contig14763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
MSDSNTRVPRLDFDLRQFCEACVMGKSHRTNTNTAVQQRTVSRLELVHSD
IFGPLPVRSRTGNRYAMLVN*
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mRNA from alignment at P-wetherbeei_contig14763:100..449+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14763.1.1 ID=mRNA_P-wetherbeei_contig14763.1.1|Name=mRNA_P-wetherbeei_contig14763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=350bp|location=Sequence derived from alignment at P-wetherbeei_contig14763:100..449+ (Phaeothamnion wetherbeei SAG_119_79)
ATCCGGAACTTATACCGGATCCAGAATACATCCGCAGATCCAAGAAAAGG AGCCGAAACGCTACAGCTGTGGCATCAACGCCTGGGGCATTCTGGTGACC ACGTGCTGCCACGGCTCATGTCCGACAGCAACACTCGAGTTCCACGACTG GACTTCGATCTACGACAATTCTGCGAAGCGTGCGTGATGGGCAAGAGCCA TCGCACGAACACCAATACGGCGGTGCAGCAGCGAACCGTTTCACGCTTGG AGCTTGTGCACAGCGATATCTTCGGTCCACTTCCTGTCCGATCAAGAACA GGCAATCGCTATGCCATGCTTGTTAATTGACCAAAGTAAAGAGATAACGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14763:100..449+

>mRNA_P-wetherbeei_contig14763.1.1 ID=mRNA_P-wetherbeei_contig14763.1.1|Name=mRNA_P-wetherbeei_contig14763.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig14763:100..449+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCGACAGCAACACTCGAGTTCCACGACTGGACTTCGATCTACGACA
ATTCTGCGAAGCGTGCGTGATGGGCAAGAGCCATCGCACGAACACCAATA
CGGCGGTGCAGCAGCGAACCGTTTCACGCTTGGAGCTTGTGCACAGCGAT
ATCTTCGGTCCACTTCCTGTCCGATCAAGAACAGGCAATCGCTATGCCAT
GCTTGTTAATTGA
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