mRNA_P-wetherbeei_contig1475.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1475.2.1
Unique NamemRNA_P-wetherbeei_contig1475.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1475.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1475contigP-wetherbeei_contig1475:3244..4393 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size747
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.6792827-UTR-P-wetherbeei_contig1475:3243..34681683186032.6792827-UTR-P-wetherbeei_contig1475:3243..3468Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1475 3244..3468 -
1683186032.7184436-UTR-P-wetherbeei_contig1475:4060..43931683186032.7184436-UTR-P-wetherbeei_contig1475:4060..4393Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1475 4061..4393 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.6982775-CDS-P-wetherbeei_contig1475:3468..35791683186032.6982775-CDS-P-wetherbeei_contig1475:3468..3579Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1475 3469..3579 -
1683186032.7080827-CDS-P-wetherbeei_contig1475:3982..40601683186032.7080827-CDS-P-wetherbeei_contig1475:3982..4060Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1475 3983..4060 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1475.2.1prot_P-wetherbeei_contig1475.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1475 3469..4060 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1475.2.1

>prot_P-wetherbeei_contig1475.2.1 ID=prot_P-wetherbeei_contig1475.2.1|Name=mRNA_P-wetherbeei_contig1475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=63bp
MVSETPPDTEGGHVLRRAVVKNTIYELSLSLTLAQDALGRPKFFHACLVP
AEENVIETATSV*
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mRNA from alignment at P-wetherbeei_contig1475:3244..4393-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1475.2.1 ID=mRNA_P-wetherbeei_contig1475.2.1|Name=mRNA_P-wetherbeei_contig1475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1150bp|location=Sequence derived from alignment at P-wetherbeei_contig1475:3244..4393- (Phaeothamnion wetherbeei SAG_119_79)
CAGCAGGCCTTCGCGTGAGTTGAACGGGCCACCGGGTCGGTTCGGGAGGG
AAGAAGGGGGGGAGCTGCGGTCGTAATTGCTGTTTTTCTGATCAGACCAC
ACCTCCAGATTGACATTTTCAGATTGATTTGTGTAGTTGAATTGCCGTGG
TTCTCTTGCTATCAATTACATTCGCTTGGCGCCAACCTTTTGCCAGGTTC
TTTCCATCTTGCTGCCAATACTTGCAATTGGCGGGGTGTCATCTCGTGCC
GCTTTTACCTCCGCTTCCGCAAACGCTGGGCCTGCCGAGTCTCTGCACAC
CCGGCGGGCGGGCGAAACAGGCTGCTGGGCGGCATGGTGAGCGAGACGCC
GCCAGACACGGAGGGGGGGCACGTCCTGCGGCGGGCCGTCGTCAAGAACA
CTATTTACGAGGTGAGTCTGATGCTGGGGCGGGTAGAACAGGCAGAATAG
ACAGTGCCCCGAACAAGAGACAGCGCACGATTTGTTTGTTTTTTGCCGCC
CGCTTCTGCTGGTGGGGCTATGGCGACGGCTGCTCGCTCGTGCTTTACGT
TCGCTGCGGAATTTGGATTCACTTGTAAAGCTCTATGGTGCGTCTCTGAA
GCGCCGGTAGTTTTGTTAAGACTTTTCCTTTCCCGTTTTTCAAAAAGGTC
TTCTTTGTGTGCCCGTTGCTGTCTTCCATGTCACGCATCTTTGCAACCGT
GCGGCATGCCGTCTTCTGGTATCGTATCTGACAACCTCAGTCTGCTTGTC
TCTTCCTTTTTTTCTCTGCAACCTCCTGTCGTTTATGCACGACGCCGCTC
TGGGCCCCTTCCAGCTGTCGCTGTCGCTGACGCTGGCCCAAGACGCGCTG
GGCCGTCCCAAGTTTTTCCATGCATGTCTCGTGCCAGCAGAAGAGAACGT
AATAGAAACTGCAACGAGTGTATGAACAGCAGTGAGCAGCCTAGAGCTCA
GATCAGCCTTGCCTATTGAACAAGAGATATGTTTGGAAACGGGCGGTGTG
GCAGGACGAAGCGGCTATAGAAGCTGCAGCCGCAACACCACCTTTGCTCA
CACTGGAGATGTCAAAAAAAGAAGAGATGATTGAGATGGTAGCGTACTAG
TGCGAGTCGCCACAGGTCGCCGCAGTCCTAATGCGACAGATTAGTACCCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1475:3244..4393-

>mRNA_P-wetherbeei_contig1475.2.1 ID=mRNA_P-wetherbeei_contig1475.2.1|Name=mRNA_P-wetherbeei_contig1475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=189bp|location=Sequence derived from alignment at P-wetherbeei_contig1475:3244..4393- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAGCGAGACGCCGCCAGACACGGAGGGGGGGCACGTCCTGCGGCG
GGCCGTCGTCAAGAACACTATTTACGAGCTGTCGCTGTCGCTGACGCTGG
CCCAAGACGCGCTGGGCCGTCCCAAGTTTTTCCATGCATGTCTCGTGCCA
GCAGAAGAGAACGTAATAGAAACTGCAACGAGTGTATGA
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