mRNA_P-wetherbeei_contig14742.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14742.1.1
Unique NamemRNA_P-wetherbeei_contig14742.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A6H5L6F8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6F8_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 3.160e-34
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 1
Query:    7 SIMYRIMPAIWAQAAVIYALFHVYAYIGILAFAGIES-NADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFINAFNAKA 378
            S+MY I P+++AQA VI+ +FH+Y Y+G+  + G+ +  ADFGD   A  PYYY  NFNSY   +VTLF LLVVNNW +I  GY   SPLG W YLYFLSF  + V +ALNVLTAIF+ AF   A
Sbjct:   74 SVMYMITPSVFAQAGVIFTVFHLYCYLGMALYGGVVTPGADFGDTPFANSPYYYENNFNSYPEGLVTLFELLVVNNWNMIITGYVHASPLGSWTYLYFLSFITLAVTLALNVLTAIFMTAFTTAA 198          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7S2WC31_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC31_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 9.080e-21
Identity = 53/119 (44.54%), Postives = 79/119 (66.39%), Query Frame = 1
Query:   19 RIMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGR-WCYLYFLSFQIVGVMVALNVLTAIFINAFNA 372
            R++P++   AAVI+A+ HVYA+IG++ F G   N    D  +   P+Y  +NFNSYG A+VTLF +L+ NNW+++A GYA      + + Y+YF+SFQI+   V ++V+TA FI A  A
Sbjct:  209 RVLPSLRGHAAVIFAVMHVYAWIGMVRFGG-RINDQLPDPWLQQDPFYRDLNFNSYGGALVTLFVILIGNNWHVVAGGYANIPGETQVFVYVYFISFQILVCTVGVSVVTAFFIEAVQA 326          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7R9U3R5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3R5_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-20
Identity = 50/113 (44.25%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   22 IMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFIN 360
            ++PA+++Q  V++ L HV+A++G+  + G  + A   + + A+   YY+ NFNSY  ++VTLF LLVVNNW+IIA G+   S  G+  YLYF++F +V V V LN++TA FI+
Sbjct:  484 VIPAVFSQCQVLFILIHVFAFLGMFIWGGRITAASRYEGDPAF---YYMCNFNSYANSLVTLFDLLVVNNWHIIATGFVGIS--GKVAYLYFVAFNVVAVSVGLNIMTAFFIS 591          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A0L0DDC3_THETB (Two-pore calcium channel 3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DDC3_THETB)

HSP 1 Score: 79.7 bits (195), Expect = 9.300e-15
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    7 SIMYRIMPAIWAQAAVIYALFHVYAYIGILAFAGI--ESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFINAF 366
            S +++++PA+   A V + +F VYA +G+  F G+  + N D      A    Y+L +FN  G A VTLF L+VVNNW++IA GY   S      +LYF+SF ++G ++ +N++ A  + AF
Sbjct:  543 STLWQLLPALATYAVVQFMVFFVYAILGMALFGGLIHDGNPDLAGTVFA-DSGYFLNSFNDVGYAYVTLFELMVVNNWHVIAEGYVAASGTEA-AWLYFISFNVIGALIIINIVIAFILEAF 662          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: D8LFM4_ECTSI (Similar to two-pore calcium channel [Arabidopsis thaliana] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFM4_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.510e-14
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1
Query:   16 YRIMPAIWAQAAVIYALFHVYAYIGILAFAGIES-NADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNN 231
            Y I P+++AQA VI+ +FH+Y Y+G+  + G+ +  ADFGD   A  PYYY  NFNSY   +VTLF LLVVNN
Sbjct:  533 YMITPSVFAQAGVIFTVFHLYCYLGMALYGGVVTPGADFGDTPFANSPYYYENNFNSYPEGLVTLFELLVVNN 605          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7S0NCV6_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0NCV6_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 1.200e-12
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1
Query:   19 RIMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTA 348
            R++PA  A    ++ALF+VYA +GI+ F G       G   +AY     L NFN +G A+VTLF LLVVNNW +I       S    W  +YF+S+ I+ VMV  N++ A
Sbjct:   38 RLLPAFSALFGALWALFYVYAQLGIVIFGGRIRTDMAGQPNVAYA----LNNFNDFGSALVTLFELLVVNNWNVIMCEAVAVS--NDWARVYFISWFILAVMVMSNLIVA 141          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7S1FFX8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1FFX8_NOCSC)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-11
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   19 RIMPAIWAQAAVIYALFHVYAYIGILAFAG-------IESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFIN 360
            R+ P       ++  +F+V+A +G+  F G         S+ DF  ++      YY  NFN +  A VTLFCL+VVNNW+I+A G+ + +  G W  L+F+ F I+  +V+LN+L A+ I+
Sbjct:  607 RLTPTYRQLGLLLVIVFYVFATLGVQLFGGKIYPGNPALSHTDFDASD------YYDFNFNDFASACVTLFCLMVVNNWFILADGFMKVT--GDWAALFFVGFFIITNLVSLNILMALIID 719          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7S4Q6R6_9DINO (Hypothetical protein n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4Q6R6_9DINO)

HSP 1 Score: 70.5 bits (171), Expect = 1.590e-11
Identity = 39/116 (33.62%), Postives = 65/116 (56.03%), Query Frame = 1
Query:   19 RIMPAIWAQAAVIYALFHVYAYIGILAFAGI--ESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFIN 360
            R+    +    ++  LF++Y  +G   F G+   +N D  D   A Q  Y+ +NFN +   MVTLF ++VVNNW++I A +   +   RW   +F+SF ++  M+ LN+L A+ I+
Sbjct:  587 RLASTYYRMGMILVVLFYIYGLLGEQFFGGLIYSTNPDLADTAFA-QANYWSMNFNDFNSGMVTLFVIMVVNNWFVITAAFIRAAGT-RWAAAFFVSFYLLVNMIVLNILMALIID 700          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: A0A7S2E6J0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E6J0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.040e-11
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   19 RIMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQPYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGY--AEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFINAFNAK 375
            +++PA+     ++    H++ YIG+  + G      +G+A     P Y L NFN+Y   +VT+F +LVVN+W+ IA  Y  A+        Y +F+   + GV + LNVLTA F+ AF  K
Sbjct:   55 QVLPAVIGPLVLVVTAMHIFTYIGMAIWGGAVHVGMYGEA---ITPLYDLNNFNTYSAGLVTMFQVLVVNDWHAIAEVYTLADRFSSDIIVYTFFIGANLFGVSILLNVLTAFFVGAFVTK 172          
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Match: K8YQT3_NANGC (Two-pore calcium channel n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQT3_NANGC)

HSP 1 Score: 69.3 bits (168), Expect = 4.130e-11
Identity = 43/113 (38.05%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   22 IMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQ-PYYYLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQIVGVMVALNVLTAIFI 357
            ++PA+ +QA VI+ L H+  Y G+  F G    +    A + +    YYL+NFN+Y   M+TLF LLVVNNW  I+A +   +      YL+F+++Q++ V +AL+ +T+ FI
Sbjct:  630 LVPALLSQATVIFFLMHLTCYAGMYLFGGRIYPSQPIWATLPFPGSLYYLLNFNTYREGMLTLFMLLVVNNWNQISAQFVRVTHPAA--YLFFMAYQVLVVTIALSCVTSFFI 740          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14742.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6F8_9PHAE3.160e-3456.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S2WC31_9STRA9.080e-2144.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9U3R5_9STRA2.800e-2044.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A0L0DDC3_THETB9.300e-1537.70Two-pore calcium channel 3 n=1 Tax=Thecamonas trah... [more]
D8LFM4_ECTSI4.510e-1453.42Similar to two-pore calcium channel [Arabidopsis t... [more]
A0A7S0NCV6_9EUKA1.200e-1241.82Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A7S1FFX8_NOCSC1.170e-1135.54Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S4Q6R6_9DINO1.590e-1133.62Hypothetical protein n=3 Tax=Alexandrium monilatum... [more]
A0A7S2E6J0_9STRA2.040e-1134.71Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
K8YQT3_NANGC4.130e-1138.05Two-pore calcium channel n=3 Tax=Monodopsidaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14742contigP-wetherbeei_contig14742:199..829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog529818.AMSG_06840T0
PFAMsGPHH,Ion_trans
Model size399
Max annot lvl2759|Eukaryota
KEGG koko:K04851,ko:K04855,ko:K16896,ko:K21862
KEGG TC1.A.1.10.13,1.A.1.11.1,1.A.1.11.20,1.A.1.11.21,1.A.1.11.22,1.A.1.11.25,1.A.1.11.5
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categorysignal anchor
Exons2
Evalue2.47e-15
EggNOG OGsKOG2301@1|root,KOG2301@2759|Eukaryota
Descriptionmembrane depolarization during action potential
Cds size387
COG categoryU
BRITEko00000,ko00001,ko02000,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.3504689-CDS-P-wetherbeei_contig14742:198..4151683186032.3504689-CDS-P-wetherbeei_contig14742:198..415Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14742 199..415 -
1683186032.360879-CDS-P-wetherbeei_contig14742:647..8171683186032.360879-CDS-P-wetherbeei_contig14742:647..817Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14742 648..817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.3723397-UTR-P-wetherbeei_contig14742:817..8291683186032.3723397-UTR-P-wetherbeei_contig14742:817..829Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14742 818..829 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14742.1.1prot_P-wetherbeei_contig14742.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14742 199..817 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14742.1.1

>prot_P-wetherbeei_contig14742.1.1 ID=prot_P-wetherbeei_contig14742.1.1|Name=mRNA_P-wetherbeei_contig14742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=129bp
MYRIMPAIWAQAAVIYALFHVYAYIGILAFAGIESNADFGDAEMAYQPYY
YLINFNSYGRAMVTLFCLLVVNNWYIIAAGYAEFSPLGRWCYLYFLSFQI
VGVMVALNVLTAIFINAFNAKAARAQKQK
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mRNA from alignment at P-wetherbeei_contig14742:199..829-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14742.1.1 ID=mRNA_P-wetherbeei_contig14742.1.1|Name=mRNA_P-wetherbeei_contig14742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=631bp|location=Sequence derived from alignment at P-wetherbeei_contig14742:199..829- (Phaeothamnion wetherbeei SAG_119_79)
GTGTGGTCGATCATGTACCGGATCATGCCGGCCATCTGGGCGCAGGCGGC GGTCATCTACGCTCTATTCCACGTCTACGCCTACATTGGCATCCTTGCGT TCGCGGGCATCGAGAGCAACGCCGACTTTGGGGACGCCGAGATGGCCTAC CAGCCCTACTACTACCTCATCAATTTCAACAGGTCGGTTGGGTGCCTACT TGTCTTCTGGGGGCGTTCTCTTATACGTTAAATAACGAGAAAAGTCTTAA TACATCCGCATTTGTGCTCGCTGGCTCTTACTCAATCTGGTTTCACTTTT CCTGCTGTTTAGAGTCTGATTTCCGGTCTGCCTTTATCCGCGGACCGAAA CACTACTTCTGATGAGAACGTTTCCAACCGCTCCAAGTCCGCCTTCCCGC CGTCACTGTTGCAGCTACGGGCGGGCCATGGTGACGCTCTTCTGCCTGTT GGTGGTGAACAACTGGTACATCATCGCTGCTGGCTACGCCGAGTTCTCCC CGCTCGGCCGCTGGTGCTACCTCTACTTCCTCAGCTTCCAGATCGTCGGC GTCATGGTGGCGCTCAACGTTCTCACGGCCATCTTCATCAACGCTTTCAA CGCCAAGGCCGCGCGCGCCCAGAAGCAGAAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14742:199..829-

>mRNA_P-wetherbeei_contig14742.1.1 ID=mRNA_P-wetherbeei_contig14742.1.1|Name=mRNA_P-wetherbeei_contig14742.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig14742:199..829- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACCGGATCATGCCGGCCATCTGGGCGCAGGCGGCGGTCATCTACGC
TCTATTCCACGTCTACGCCTACATTGGCATCCTTGCGTTCGCGGGCATCG
AGAGCAACGCCGACTTTGGGGACGCCGAGATGGCCTACCAGCCCTACTAC
TACCTCATCAATTTCAACAGCTACGGGCGGGCCATGGTGACGCTCTTCTG
CCTGTTGGTGGTGAACAACTGGTACATCATCGCTGCTGGCTACGCCGAGT
TCTCCCCGCTCGGCCGCTGGTGCTACCTCTACTTCCTCAGCTTCCAGATC
GTCGGCGTCATGGTGGCGCTCAACGTTCTCACGGCCATCTTCATCAACGC
TTTCAACGCCAAGGCCGCGCGCGCCCAGAAGCAGAAG
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