mRNA_P-wetherbeei_contig14733.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14733.1.1
Unique NamemRNA_P-wetherbeei_contig14733.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: D7FYL3_ECTSI (MutS protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL3_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 3.250e-43
Identity = 86/128 (67.19%), Postives = 100/128 (78.12%), Query Frame = 1
Query:  112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIEGTVEALIPSA 456
            K TPMEQQVVDLK KHP VLLLVECGYR+RFFG DA  AA+VLR+YAHMDHNF VAS+PT RL V            GVVRQ E+AA+KAAGL+ +G KSGTFKREL  +F+ AT++EG VEAL+PS+
Sbjct:  360 KLTPMEQQVVDLKAKHPGVLLLVECGYRYRFFGDDALAAAKVLRIYAHMDHNFQVASVPTFRLAVHLRRLVDAGYKVGVVRQAESAALKAAGLTETGKKSGTFKRELAAVFSQATWVEGAVEALMPSS 487          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A4D9D7L2_9STRA (MutS_I domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D7L2_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.220e-35
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  103 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 426
            G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA  A+QVL +Y ++DH F VASIPT R+ V            GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT  T+ E
Sbjct:  161 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 281          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: W7TSS8_9STRA (Dna mismatch repair protein msh3 (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSS8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.970e-35
Identity = 75/121 (61.98%), Postives = 88/121 (72.73%), Query Frame = 1
Query:  103 GAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLS-SGPKSGTFKRELVGMFTPATFIE 426
            G+ + TP+EQQVV LKR HPD LLLVECGYR RFFG+DA  A+QVL +Y ++DH F VASIPT R+ V            GVVRQ ETAA+KAAGLS SG KSGTF+REL G+FT  T+ E
Sbjct:  269 GSTRLTPLEQQVVALKRAHPDTLLLVECGYRVRFFGEDALHASQVLGIYTYIDHAFYVASIPTLRIKVHLKRLVEAGFKVGVVRQTETAALKAAGLSASGAKSGTFQRELAGVFTRCTYNE 389          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: Q9M512_BRANA (DNA mismatch repair protein (Fragment) n=1 Tax=Brassica napus TaxID=3708 RepID=Q9M512_BRANA)

HSP 1 Score: 130 bits (328), Expect = 1.610e-34
Identity = 68/114 (59.65%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 417
            KYTP+EQQVV+LKRKHPDV+L+VE GYR+RFFG+DAEIAA+VL +YAHMDH+FM AS+PT RL V            GVV+Q ETAA+K+ G +   ++G F R L G++T AT
Sbjct:   65 KYTPLEQQVVELKRKHPDVILMVEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRGLVNAGYKVGVVKQTETAAIKSHGAN---RAGPFFRGLSGLYTKAT 175          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6J8AAJ0_MYTCO (DNA mismatch repair protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AAJ0_MYTCO)

HSP 1 Score: 136 bits (342), Expect = 6.000e-34
Identity = 68/116 (58.62%), Postives = 87/116 (75.00%), Query Frame = 1
Query:  112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 423
            KYTP+EQQ VD+K K+PD LLLVECGY++RFFG+DAE+AA+VL+++ H+DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   KS  F R+L  ++T +T I
Sbjct:  204 KYTPLEQQYVDIKNKYPDALLLVECGYKYRFFGEDAEVAAKVLKIFCHLDHNFMTASIPTHRLFVHVRRLVSAGYKVGVVKQMETAALKAAGDN---KSAPFTRQLQSLYTKSTLI 316          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A6P8YVN5_THRPL (DNA mismatch repair protein Msh3-like n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8YVN5_THRPL)

HSP 1 Score: 134 bits (337), Expect = 2.800e-33
Identity = 72/129 (55.81%), Postives = 90/129 (69.77%), Query Frame = 1
Query:   94 AAAGAKKYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLI------------VGVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 444
            A  G  K+TP+EQQVVDLK++HP VLL VECGY++RFFG+DAEIAAQ L +YAH+DHNFM ASIP HRL             VG+V+Q+ETAA+KA    S  KS  F R+L  +FT AT I   V+++
Sbjct:  163 AKFGKVKFTPLEQQVVDLKKEHPGVLLFVECGYKYRFFGEDAEIAAQELNIYAHLDHNFMTASIPVHRLHAHVGRLVEKGHKVGIVKQVETAALKAM---SDNKSAPFTRKLQHLFTRATLIGEDVDSI 288          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI001458765E (LOW QUALITY PROTEIN: DNA mismatch repair protein Msh3-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458765E)

HSP 1 Score: 132 bits (333), Expect = 9.780e-33
Identity = 71/128 (55.47%), Postives = 90/128 (70.31%), Query Frame = 1
Query:  100 AGAK-KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEAL 444
            AG K KYTP+EQQ VD+K K+P  +L VECGY++RFFG+DAEIAA+VL+++ H+DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   +S  F REL  ++T +T I   V  L
Sbjct:  247 AGKKIKYTPLEQQFVDIKEKYPHAVLCVECGYKYRFFGEDAEIAAEVLKIFCHLDHNFMTASIPTHRLFVHVRRLVAAGYKVGVVKQMETAALKAAGDN---RSAPFTRELSALYTKSTLIGEDVNPL 371          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A2P5CUR2_PARAD (DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5CUR2_PARAD)

HSP 1 Score: 129 bits (323), Expect = 1.360e-32
Identity = 68/114 (59.65%), Postives = 84/114 (73.68%), Query Frame = 1
Query:  112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPAT 417
            KYTP+EQQVVDLK+KHPDVLL+VE GY++RFFG+DAE AA+VL +YAHMDHNF+ AS+PT RL V            GVV+Q ETAA+KA GL+   + G F R L  ++T AT
Sbjct:  125 KYTPLEQQVVDLKKKHPDVLLMVEVGYKYRFFGEDAETAARVLGIYAHMDHNFLTASVPTFRLSVHVRRLVSAGFKVGVVKQTETAAMKAHGLN---RLGPFCRGLSALYTKAT 235          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: UPI00148A8C1D (DNA mismatch repair protein Msh3 isoform X1 n=1 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A8C1D)

HSP 1 Score: 131 bits (329), Expect = 1.860e-32
Identity = 67/121 (55.37%), Postives = 83/121 (68.60%), Query Frame = 1
Query:  112 KYTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVE 438
            KYTP+EQQ ++LK K+PD LL VECGY++RFFG+DAE AA VL++Y H DHNFM ASIP HRL V            GVV+QMETAA+KA G +   KSG F R+L  M+T +T     V+
Sbjct:  212 KYTPLEQQYIELKEKYPDTLLFVECGYKYRFFGEDAENAAHVLKIYCHQDHNFMTASIPVHRLFVHVRRLVAAGYKVGVVKQMETAALKACGDN---KSGPFTRQLTAMYTKSTLFGQDVD 329          
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Match: A0A7K4IY56_GEOCA (MSH3 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K4IY56_GEOCA)

HSP 1 Score: 122 bits (305), Expect = 2.170e-32
Identity = 61/115 (53.04%), Postives = 81/115 (70.43%), Query Frame = 1
Query:  115 YTPMEQQVVDLKRKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRLIV------------GVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFI 423
            YTP+E Q +++K+++ D +L VECGY++RFFG+DAEIAA+ L +Y H DHNFM ASIPTHRL V            GVV+QMETAA+KAAG +   KS  F R+L  ++T +T I
Sbjct:   24 YTPLELQFIEMKKQYKDAVLCVECGYKYRFFGEDAEIAAKELNIYCHQDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQMETAALKAAGEN---KSSLFSRKLTALYTKSTLI 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14733.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYL3_ECTSI3.250e-4367.19MutS protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
A0A4D9D7L2_9STRA1.220e-3561.98MutS_I domain-containing protein n=1 Tax=Nannochlo... [more]
W7TSS8_9STRA7.970e-3561.98Dna mismatch repair protein msh3 (Fragment) n=1 Ta... [more]
Q9M512_BRANA1.610e-3459.65DNA mismatch repair protein (Fragment) n=1 Tax=Bra... [more]
A0A6J8AAJ0_MYTCO6.000e-3458.62DNA mismatch repair protein n=2 Tax=Mytilus corusc... [more]
A0A6P8YVN5_THRPL2.800e-3355.81DNA mismatch repair protein Msh3-like n=1 Tax=Thri... [more]
UPI001458765E9.780e-3355.47LOW QUALITY PROTEIN: DNA mismatch repair protein M... [more]
A0A2P5CUR2_PARAD1.360e-3259.65DNA mismatch repair n=2 Tax=Cannabaceae TaxID=3481... [more]
UPI00148A8C1D1.860e-3255.37DNA mismatch repair protein Msh3 isoform X1 n=1 Ta... [more]
A0A7K4IY56_GEOCA2.170e-3253.04MSH3 protein (Fragment) n=3 Tax=Neognathae TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14733contigP-wetherbeei_contig14733:6..1229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FYL3
PFAMsMutS_I,MutS_II,MutS_III,MutS_V
Model size510
Max annot lvl2759|Eukaryota
KEGG koko:K08736
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.33e-44
EggNOG OGsCOG0249@1|root,KOG0218@2759|Eukaryota
DescriptionComponent of the post-replicative DNA mismatch repair system (MMR)
Cds size510
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186032.0191283-CDS-P-wetherbeei_contig14733:5..2121683186032.0191283-CDS-P-wetherbeei_contig14733:5..212Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14733 6..212 -
1683186032.0320413-CDS-P-wetherbeei_contig14733:628..6971683186032.0320413-CDS-P-wetherbeei_contig14733:628..697Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14733 629..697 -
1683186032.042848-CDS-P-wetherbeei_contig14733:995..12291683186032.042848-CDS-P-wetherbeei_contig14733:995..1229Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14733 996..1229 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14733.1.1prot_P-wetherbeei_contig14733.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14733 6..1229 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14733.1.1

>prot_P-wetherbeei_contig14733.1.1 ID=prot_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=170bp
TGDGNGGCGGGSGGGSGDGGRSGGKGKGRAAAAAGAKKYTPMEQQVVDLK
RKHPDVLLLVECGYRFRFFGKDAEIAAQVLRVYAHMDHNFMVASIPTHRL
IVGVVRQMETAAVKAAGLSSGPKSGTFKRELVGMFTPATFIEGTVEALIP
SAAPGATSGGGEGGGGRGGG
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mRNA from alignment at P-wetherbeei_contig14733:6..1229-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14733.1.1 ID=mRNA_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1224bp|location=Sequence derived from alignment at P-wetherbeei_contig14733:6..1229- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGATGGCAACGGTGGCTGCGGCGGCGGCAGCGGCGGCGGAAGCGG CGATGGCGGCAGAAGCGGCGGCAAGGGCAAGGGACGGGCGGCGGCAGCGG CCGGCGCGAAGAAGTACACGCCGATGGAGCAGCAGGTGGTGGACCTGAAG CGGAAGCACCCGGATGTGCTATTGCTGGTGGAGTGCGGCTACCGCTTCCG TTTTTTCGGTAAGGACGCCGAGATCGCCGCCCAGGTGAGGCGAAACGGAG GCGATTGTTCTCGCTGGCTAATGGGAGTGCCCTTCGCTTCTGCAACACTT TCCTCCCCTGGCCCCCCTTTCTTTCTGCTGCATTACGTCTTACCATTTCG CCGTCGGGAAAGTTCCATTCCCCCTTCTTCCCCTAGTGCGCGTTTCCTCT CTCCCCGCGTAGTCTCATTCCACCATCTTTCCCTTCCTTTCCTCGCTCTA CTGTTCATTACGTTTCCACCTCGCCGATTTGCATCTAACCTCTTCTCCGT GACGGGCCGCCGTTACGTCCGCCTGCCTGCAGGTCCTGCGGGTATACGCC CACATGGACCACAATTTTATGGTGGCGAGCATCCCCACACACCGCCTTAT CGTCCATCTCCGGCGCCTCATTGACGCCGGCCACAAGGCAAGAACTGAAG AGAGAAGGAAAAGAAGAAGAAAGAAAGAGGAAGAATGAGGAGAAATACTT CTTTTTGGGCAACCATTTGTGCTGTTCAGGCTTCTTGCTATGTCACTTTC TGTTTCCGTTTCTCTGCTTCTCTTTTTTTGGGACTGCGGAGCTCAATGTT GATAGCGTACAGCATCTTTTTAGGGGTGGCATGGTTTCTTTGGCTCGTCT TTCAGTTCTCTGTGTGAATGGATCGGTTGCGAAAGGAAGAACATCTCACG CCCCATCCTAATGACCATGATTCTCTCTCAAAACGCTTTCTTCTTTCTTC CGTTGTTTTCCCTGGGTCTGTCCGGCGCGACCGGGACCGCGCGACGTTTC TGGGGAGAAGAAAACAGGTCGGCGTGGTGCGGCAGATGGAAACGGCAGCC GTCAAGGCCGCAGGCCTCAGCAGCGGCCCCAAAAGCGGCACCTTCAAGCG GGAGCTTGTCGGCATGTTCACGCCGGCGACCTTCATCGAAGGCACCGTCG AAGCCCTGATTCCGTCCGCCGCTCCCGGCGCCACCAGCGGGGGCGGCGAG GGCGGCGGCGGCAGGGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14733:6..1229-

>mRNA_P-wetherbeei_contig14733.1.1 ID=mRNA_P-wetherbeei_contig14733.1.1|Name=mRNA_P-wetherbeei_contig14733.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig14733:6..1229- (Phaeothamnion wetherbeei SAG_119_79)
ACCGGCGATGGCAACGGTGGCTGCGGCGGCGGCAGCGGCGGCGGAAGCGG
CGATGGCGGCAGAAGCGGCGGCAAGGGCAAGGGACGGGCGGCGGCAGCGG
CCGGCGCGAAGAAGTACACGCCGATGGAGCAGCAGGTGGTGGACCTGAAG
CGGAAGCACCCGGATGTGCTATTGCTGGTGGAGTGCGGCTACCGCTTCCG
TTTTTTCGGTAAGGACGCCGAGATCGCCGCCCAGGTCCTGCGGGTATACG
CCCACATGGACCACAATTTTATGGTGGCGAGCATCCCCACACACCGCCTT
ATCGTCGGCGTGGTGCGGCAGATGGAAACGGCAGCCGTCAAGGCCGCAGG
CCTCAGCAGCGGCCCCAAAAGCGGCACCTTCAAGCGGGAGCTTGTCGGCA
TGTTCACGCCGGCGACCTTCATCGAAGGCACCGTCGAAGCCCTGATTCCG
TCCGCCGCTCCCGGCGCCACCAGCGGGGGCGGCGAGGGCGGCGGCGGCAG
GGGCGGCGGC
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