mRNA_P-wetherbeei_contig14727.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14727.1.1
Unique NamemRNA_P-wetherbeei_contig14727.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: UPI001C9BC1AB (secreted RxLR effector protein 161-like n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9BC1AB)

HSP 1 Score: 115 bits (288), Expect = 1.640e-27
Identity = 63/145 (43.45%), Postives = 92/145 (63.45%), Query Frame = 2
Query:   20 LELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQERL 454
            ++   YSDA+ AG +D+ RSTTG + L+AGG V++SS  Q  ++RST E+EY+A  D +QE   LR LL  L V+   PT +H DN +A+ +     H ++++HI I+YH  RE V  G I +  V T +QLAD LTK V +++ 
Sbjct:   99 IDFTAYSDADFAGDVDTRRSTTGYITLMAGGPVIWSSHRQKCISRSTTEAEYVAASDASQEVTWLRILLQELCVDLKNPTPLHMDNQSAIRLTKNTEHHKKTKHIDIKYHYIRECVEHGAIKIIYVCTEEQLADILTKAVPRDKF 243          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A2P4XPH2_9STRA (RxLR effector candidate protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XPH2_9STRA)

HSP 1 Score: 113 bits (283), Expect = 6.450e-27
Identity = 61/143 (42.66%), Postives = 91/143 (63.64%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQER 451
            ELVGY+DAN AG LD+ RSTTG +F L G  + + S+ Q +VA S+ E+EYMAL++  QEA  LR LL  LG E    T I++DN   +A+A    +  +++HI I++H  RE V +  + +E   T + +ADG TK + +++
Sbjct:   86 ELVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTKALARDK 228          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A182GEU4_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GEU4_AEDAL)

HSP 1 Score: 113 bits (283), Expect = 8.890e-27
Identity = 68/144 (47.22%), Postives = 89/144 (61.81%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQERL 454
            +LVGYSDA+ AG  +  +S +G LF L G  V ++SR Q  V  STME+EY+AL + AQEA  LR LL  L  EQT PTVI EDN + L  A+     ++S+H+  RYH TRELV    I +    T + LAD LTK +G  ++
Sbjct:   95 KLVGYSDADWAGDANDRKSCSGFLFGLGGATVSWTSRKQTCVTMSTMEAEYVALSEAAQEAVWLRGLLKELNEEQTKPTVIFEDNRSCLDFAVLDQQRKRSKHVDTRYHYTRELVTQKQIELRYCPTDEMLADVLTKPLGSTKV 238          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A1X7SEB0_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SEB0_AMPQE)

HSP 1 Score: 113 bits (282), Expect = 3.870e-26
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 2
Query:   26 LVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQERL 454
            LVGYSDA+ AG LD   ST+G+LFLLAGG + + S+ Q +V+ ST E+EY++L    QEA  +R LL  +   Q APTVI EDN   +A+A       +++HI I+YH  RE +  G + +E   T + +AD  TK +  ER 
Sbjct:  151 LVGYSDADWAGDLDDRHSTSGNLFLLAGGAISWLSKKQPTVSLSTAEAEYVSLCSATQEAVWIRRLLHDINCSQGAPTVIKEDNQGTIAIARNPVSHSRTKHIEIKYHYVRETIMDGQVSLEYCPTEEMIADLFTKPLASERF 293          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A2P4YHT5_9STRA (RxLR effector candidate protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YHT5_9STRA)

HSP 1 Score: 112 bits (281), Expect = 1.010e-25
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTK 433
            ELVGY+DAN AG LD+ RSTTG +F L G  + + S+ Q +VA S+ E+EYMAL++  QEA  LR LL  LG E    T I++DN   +A+A    +  +++HI I++H  RE V +  + +E   T + +ADG TK
Sbjct:  191 ELVGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNAIQEAVWLRQLLKDLGYENKGATTIYQDNQGCIALAKNPAYHTRTKHIDIKFHFLREKVESKTVELEYKPTDEMIADGFTK 327          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 112 bits (279), Expect = 1.110e-25
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTK 433
            EL+GY+DAN AG LD+ RSTTG +F L G  + + S+ Q +VA S+ E+EYMAL++  QEA  LR LL  +G E    T   +DN   +A+A    +  +++HI ++YH  RE V   VIV+E   T + +ADG TK
Sbjct:  158 ELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 294          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 113 bits (282), Expect = 1.790e-25
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTK 433
            EL+GY+DA+ AG LD+ RSTTG +F L G  + + S+ Q +VA S+ E+EYMAL++  QEA  LR LL  +G E  A T I +DN   +A+A    +  +++HI ++YH  RE V   VIV+E   T + +ADG TK
Sbjct:  254 ELIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVAATTIFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTK 390          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: UPI00193CD1D9 (secreted RxLR effector protein 161-like n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193CD1D9)

HSP 1 Score: 108 bits (270), Expect = 2.630e-25
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 2
Query:   23 ELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQERLE 457
            +L+ YSDA+ A CLD+ +ST+G + +L  G +++SSR +H VA ST ++EY+A +D  +E    R LL  +GVEQ  PT +  DN A   +       R+S+H+ I++H TRELV    I ++ VST  QLAD LTK + + + E
Sbjct:   59 QLIAYSDADYASCLDTRKSTSGVILMLNDGPIIWSSR-KHIVATSTTDAEYVAAYDATKEVVWSRQLLKDIGVEQFEPTTLFCDNAATQKLIENPIFHRKSKHVDIKFHYTRELVKQKQIKIQHVSTQSQLADILTKPLARGKFE 202          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A060STY7_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060STY7_PYCCI)

HSP 1 Score: 108 bits (269), Expect = 1.040e-24
Identity = 61/138 (44.20%), Postives = 83/138 (60.14%), Query Frame = 2
Query:   20 LELVGYSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTK 433
            LE +GYSDA+ A  LD  +S  G +FLL G  + +SSR Q +VA+S+ME+EYMA+   A E   LR LL  LG   + PT ++ DN +A+A A        ++HI I YH  RE +A+  +VV    + D LAD LTK
Sbjct:  101 LEPLGYSDADWANDLDDRKSIAGQVFLLGGAPITWSSRKQRTVAKSSMEAEYMAMSAAASEIAWLRALLTELGFPPSGPTPLYVDNQSAIASANVQTSHACTKHIDIHYHFIRERIASNEVVVNHCPSEDNLADALTK 238          
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Match: A0A225V6X1_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V6X1_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.660e-24
Identity = 61/133 (45.86%), Postives = 85/133 (63.91%), Query Frame = 2
Query:   35 YSDANLAGCLDSGRSTTGSLFLLAGGVVVFSSRLQHSVARSTMESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAGHTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTK 433
            + D N  G L S RST+G L L+ G  V+F ++ Q +VA S+ ESEYMAL   AQEA  LR LL  L ++    T I+ DN AA+A+A  AG+  +++HI +RYH  RE V  G++ +E + +A QLAD +TK
Sbjct:  221 FVDVNWGGDLKSRRSTSGVLVLMCGWPVIFKAKRQRTVALSSAESEYMALSLAAQEAMWLRNLLGELALDDLPSTTINIDNKAAIALAEQAGYQSRAKHIALRYHFAREAVEEGILTLEYIPSATQLADFMTK 353          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14727.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C9BC1AB1.640e-2743.45secreted RxLR effector protein 161-like n=1 Tax=Ve... [more]
A0A2P4XPH2_9STRA6.450e-2742.66RxLR effector candidate protein (Fragment) n=1 Tax... [more]
A0A182GEU4_AEDAL8.890e-2747.22Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]
A0A1X7SEB0_AMPQE3.870e-2644.06Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2P4YHT5_9STRA1.010e-2544.53RxLR effector candidate protein n=1 Tax=Phytophtho... [more]
H3GB69_PHYRM1.110e-2544.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3GB17_PHYRM1.790e-2545.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00193CD1D92.630e-2542.07secreted RxLR effector protein 161-like n=1 Tax=So... [more]
A0A060STY7_PYCCI1.040e-2444.20Uncharacterized protein n=1 Tax=Pycnoporus cinnaba... [more]
A0A225V6X1_9STRA1.660e-2445.86Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14727contigP-wetherbeei_contig14727:339..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size764
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.56e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size351
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.759207-UTR-P-wetherbeei_contig14727:338..5071683186031.759207-UTR-P-wetherbeei_contig14727:338..507Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14727 339..507 -
1683186031.7701705-UTR-P-wetherbeei_contig14727:887..9701683186031.7701705-UTR-P-wetherbeei_contig14727:887..970Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14727 888..970 -
1683186031.7818816-UTR-P-wetherbeei_contig14727:1107..11081683186031.7818816-UTR-P-wetherbeei_contig14727:1107..1108Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14727 1108..1108 -
1683186031.799441-UTR-P-wetherbeei_contig14727:1459..16191683186031.799441-UTR-P-wetherbeei_contig14727:1459..1619Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14727 1460..1619 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.7893698-CDS-P-wetherbeei_contig14727:1108..14591683186031.7893698-CDS-P-wetherbeei_contig14727:1108..1459Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14727 1109..1459 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14727.1.1prot_P-wetherbeei_contig14727.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14727 1109..1459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14727.1.1

>prot_P-wetherbeei_contig14727.1.1 ID=prot_P-wetherbeei_contig14727.1.1|Name=mRNA_P-wetherbeei_contig14727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=117bp
MESEYMALFDVAQEAEQLRTLLAHLGVEQTAPTVIHEDNTAALAVAMAAG
HTRQSRHIRIRYHVTRELVAAGVIVVEQVSTADQLADGLTKNVGQERLEG
EKQDSDHLRQGLPPHV*
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mRNA from alignment at P-wetherbeei_contig14727:339..1619-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14727.1.1 ID=mRNA_P-wetherbeei_contig14727.1.1|Name=mRNA_P-wetherbeei_contig14727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1281bp|location=Sequence derived from alignment at P-wetherbeei_contig14727:339..1619- (Phaeothamnion wetherbeei SAG_119_79)
GGCGACGGCAGCAGCATCACTGGAGCTGGTGGGCTACAGCGACGCAAATC TGGCAGGATGCTTGGACAGCGGCCGCTCTACGACCGGCAGCCTGTTTCTG CTAGCAGGCGGCGTCGTGGTTTTCTCATCTCGGCTGCAGCATTCGGTGGC GCGATCGACGATGGAGAGCGAGTACATGGCGCTCTTCGACGTGGCACAGG AGGCGGAGCAGCTACGAACGCTGCTGGCTCATCTGGGCGTGGAGCAGACG GCGCCAACGGTTATCCACGAGGACAACACGGCGGCGCTGGCCGTGGCGAT GGCGGCTGGACACACGCGCCAGTCGCGCCACATCCGCATCCGCTACCACG TCACGCGGGAGCTGGTGGCGGCGGGCGTGATCGTCGTGGAGCAGGTCAGC ACGGCTGACCAGCTGGCCGACGGTCTGACAAAGAATGTCGGGCAGGAGCG GCTAGAAGGCGAGAAACAAGACTCTGACCATCTCAGACAAGGACTGCCAC CGCATGTATGAGGTGAGCGGCGTTGCTGCATGTAGAGACCTAGATGGAGT CATCGGCGCCGGCTAGGATAATGCGTTGCGGCTGGCTGAGCATTTTCTGG ATGAGGTTTCCTCTTCTGATCGTGGCTTTGTGTCTTTTCGCTTTCGCAGG TGTGCAGTGGCAAACCCCTTGGCACTTTCCAGGGCCGCTCATGGCCTCGA GCGCTCTCCTGGCAGGAAATCCTGGTCGTCAGGTGAGTGGCGCAACAAGC ACGCGCTGATGGGCGCGATGTGTGGCAGTACCTCTCTGCGTCATTTGCTT TTTTGGTTGTTTGAGCGAACAGTTTTGCGTAGGATGGTGTCCTCGCTGAA AGAGCGCCTTTCAGTCAAATGCCGTGCAAAACCTGGCTTGACTTTTTGCT ATGCCCCCCTTACCTATCTATGTTGCTGGGTGCTCCGACTGCGGCTAACA ACTCGCTACGCACGCAGCGCTTCTGAACATTTTGAAAGATCCGCGCCGCG ATGTCCTGCGTGCTGCTTTGGGTGGCGTTGGCTGGTCAGAGTGTCAGTTT GCGGACGCAGCTCTGATCCTTCTGAACGCTCCGACCCACGACGTCTTCCG TTGTGGATGCAGATGCAGCTGGACGGCCACGGCAGGAAGGCCGTTTCTTG TGGCAAAGCCACATAGGCGACAGCAGGGGACCGAGCACTTGTTGCGCTCG TGAATGCTAACCAACTCGGCCTCCGTCATTTCAGCGAACGGGCGACCGAC ATCCCGCTGAAGGTTTACGGCCCTAACGGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14727:339..1619-

>mRNA_P-wetherbeei_contig14727.1.1 ID=mRNA_P-wetherbeei_contig14727.1.1|Name=mRNA_P-wetherbeei_contig14727.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=351bp|location=Sequence derived from alignment at P-wetherbeei_contig14727:339..1619- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGAGCGAGTACATGGCGCTCTTCGACGTGGCACAGGAGGCGGAGCA
GCTACGAACGCTGCTGGCTCATCTGGGCGTGGAGCAGACGGCGCCAACGG
TTATCCACGAGGACAACACGGCGGCGCTGGCCGTGGCGATGGCGGCTGGA
CACACGCGCCAGTCGCGCCACATCCGCATCCGCTACCACGTCACGCGGGA
GCTGGTGGCGGCGGGCGTGATCGTCGTGGAGCAGGTCAGCACGGCTGACC
AGCTGGCCGACGGTCTGACAAAGAATGTCGGGCAGGAGCGGCTAGAAGGC
GAGAAACAAGACTCTGACCATCTCAGACAAGGACTGCCACCGCATGTATG
A
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