mRNA_P-wetherbeei_contig14720.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14720.2.1
Unique NamemRNA_P-wetherbeei_contig14720.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14720.2.1 vs. uniprot
Match: A0A6I2YUF2_9ACTN (Ribosomal RNA small subunit methyltransferase G n=2 Tax=root TaxID=1 RepID=A0A6I2YUF2_9ACTN)

HSP 1 Score: 50.4 bits (119), Expect = 2.240e-5
Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:    1 SAHVEVIASDVE-LVHRARGRFA-DIATARSFAAAELTARWGSRLLVDGGCLLVSEPPRTDDARWPVD 198
            S HV V+A   E L HR   R A D+  ARSF    +TA  G+  LV+GG L+VSEPP     RWP +
Sbjct:   98 SEHVSVLAGRAEDLGHREDLRGAIDVVVARSFGPPAVTAECGAPFLVEGGALVVSEPPEGRAERWPAE 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14720.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6I2YUF2_9ACTN2.240e-547.06Ribosomal RNA small subunit methyltransferase G n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14720contigP-wetherbeei_contig14720:1419..1685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size267
Hectar predicted targeting categoryother localisation
Exons1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186031.6254225-CDS-P-wetherbeei_contig14720:1418..16851683186031.6254225-CDS-P-wetherbeei_contig14720:1418..1685Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14720 1419..1685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14720.2.1prot_P-wetherbeei_contig14720.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14720 1419..1685 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14720.2.1

>prot_P-wetherbeei_contig14720.2.1 ID=prot_P-wetherbeei_contig14720.2.1|Name=mRNA_P-wetherbeei_contig14720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=89bp
SAHVEVIASDVELVHRARGRFADIATARSFAAAELTARWGSRLLVDGGCL
LVSEPPRTDDARWPVDLLERERLVDDGLVDGVRVFRRR*
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mRNA from alignment at P-wetherbeei_contig14720:1419..1685-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14720.2.1 ID=mRNA_P-wetherbeei_contig14720.2.1|Name=mRNA_P-wetherbeei_contig14720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig14720:1419..1685- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCACATGTGGAAGTCATCGCCAGTGACGTCGAGCTCGTCCATCGCGC
TCGGGGCCGGTTCGCCGACATCGCCACGGCGCGCAGCTTCGCCGCCGCCG
AGCTCACCGCCCGCTGGGGCAGCCGGCTCCTCGTCGACGGCGGGTGCCTG
CTGGTGAGTGAGCCGCCGCGGACCGATGACGCCCGTTGGCCGGTGGACCT
GCTCGAACGAGAGCGACTCGTTGACGACGGCCTCGTCGACGGCGTCCGCG
TCTTTCGCCGCCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14720:1419..1685-

>mRNA_P-wetherbeei_contig14720.2.1 ID=mRNA_P-wetherbeei_contig14720.2.1|Name=mRNA_P-wetherbeei_contig14720.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=267bp|location=Sequence derived from alignment at P-wetherbeei_contig14720:1419..1685- (Phaeothamnion wetherbeei SAG_119_79)
TCGGCACATGTGGAAGTCATCGCCAGTGACGTCGAGCTCGTCCATCGCGC
TCGGGGCCGGTTCGCCGACATCGCCACGGCGCGCAGCTTCGCCGCCGCCG
AGCTCACCGCCCGCTGGGGCAGCCGGCTCCTCGTCGACGGCGGGTGCCTG
CTGGTGAGTGAGCCGCCGCGGACCGATGACGCCCGTTGGCCGGTGGACCT
GCTCGAACGAGAGCGACTCGTTGACGACGGCCTCGTCGACGGCGTCCGCG
TCTTTCGCCGCCGCTGA
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