mRNA_P-wetherbeei_contig147.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig147.8.1
Unique NamemRNA_P-wetherbeei_contig147.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: K0R1V2_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1V2_THAOC)

HSP 1 Score: 221 bits (562), Expect = 5.880e-64
Identity = 112/232 (48.28%), Postives = 148/232 (63.79%), Query Frame = 1
Query:  316 MSFEVRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNELQRP-HMLYEFRR 1008
            +SF      I++ADDPFG  P  D TGLG+W A++VMARWLA P++  R+ G  + ELGAGC +  L+AAVH  P+ ++ TDLNPETV N+ HNVELN     AA    +  AT+DWGD ST+P     +  D+V+  D IY +   PLL   ++G+   GGTFLYVAPD GRDGLP F +++   GF      +APE Y+ NPL SG   D  L+F+EL    ++LYEFR+
Sbjct:  318 LSFSRNPQPIKHADDPFGQAPEDDTTGLGIWCASLVMARWLASPSMVERMAGRRVRELGAGCAIPSLAAAVHGSPAEVIATDLNPETVENIRHNVELNSSTSRAA---KLSAATIDWGDESTYPP----DPVDYVLCSDCIYQRDIVPLLRKVVSGVLAPGGTFLYVAPDGGRDGLPAFISSMGKNGFERAGGREAPEGYRSNPLRSGDGEDCFLHFHELASTRYVLYEFRK 542          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A7S4SA78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SA78_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.010e-62
Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 1
Query:  319 SFEVRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNEL-QRPHMLYEF 1002
            S  +REL I +ADDPFG +   D TGLG+W A++VM+RW+A PA+S +L+  +++ELGAGCGV GL+AA ++    + LTDLNP T++NL HN+++N ++        V  A++DWGD STWP  +     D VIG DLIY     PLL   + G+  + GTFLYVAPDTGRDGLPEF A +   GF       AP  Y  NPL SG E D  L+F+EL    ++LY F
Sbjct:  263 SVLIRELPIAHADDPFGDKAIDDTTGLGIWCASLVMSRWVASPAVSKQLKDKSVVELGAGCGVPGLAAAAYSDAKSVSLTDLNPATMSNLRHNIDINGKQGGENWSTRVTAASIDWGDESTWPADK----VDVVIGSDLIYQSSIVPLLRKVVTGLLGKQGTFLYVAPDTGRDGLPEFIAVMKGEGFHCEEEIIAPPSYCANPLKSGDEEDCFLHFHELASTTYILYTF 487          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: D7G640_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G640_ECTSI)

HSP 1 Score: 215 bits (548), Expect = 1.240e-62
Identity = 147/356 (41.29%), Postives = 193/356 (54.21%), Query Frame = 1
Query:    1 FVSGDHEVVRMVLEHQSAEEDMLLQASSLGSGKTAAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGLDADDGGP----MSFEVRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALR--------------GFAALSAEQAPEHYKENPLLSGSEGDYLLYFNEL-QRPHMLYEFRRR 1011
            F +GD E+V+MVL H+SAEED+LLQ SSL   K+   +                                              XXXXXXXXXXX              + F +RELAIRN D+ FG +  +D TGL +WAAAVV+ARW+A PA+  RL G  +LELGAGCG  G+SAAVH  P+ +++TDLN ET+ANL HN+ELNR R+ A  G  V    LDWGD STW  + +    D V+  D++Y       L +AI  + + GG+F +VAP + RDGL  F A L                 GF  +SA  AP  + +NPLLSGS+ +Y+++FNEL      L+EFR+R
Sbjct:  116 FKTGDAEMVKMVLNHKSAEEDILLQQSSLSKDKSKMKKEGISSKPVNSKKGDAGHEEDDGGSGDGPSITHELGFGIGEGEAVTSXXXXXXXXXXXXXXXXXXXXXXXRGVRFLLRELAIRNPDECFGDDAREDTTGLNLWAAAVVLARWVASPAIVSRLDGKTVLELGAGCGAGGISAAVHGSPASMLITDLNAETMANLGHNIELNRHRYPA--GTEVRAVKLDWGDESTW--EEAKPPVDVVLAADVVYQASETSPLLHAILSLLKPGGSFFHVAPVSERDGLEGFLARLCGTAGGEGAAAGGGGDSGFELVSATDAPPEFCQNPLLSGSQDEYMVHFNELPSSTFRLHEFRKR 467          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A7S2LND3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LND3_9STRA)

HSP 1 Score: 213 bits (542), Expect = 3.020e-62
Identity = 113/247 (45.75%), Postives = 152/247 (61.54%), Query Frame = 1
Query:  328 VRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHA---RPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGR----HVFVATLDWGDTSTWPV--QRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGT---------FLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNELQRP-HMLYEFRRR 1011
            +REL I +AD+PFG+ P +D TGLG+W A++VMARW+A P +  R QG  + ELGAGC + GL+AA++     P+R+ LTDLN  T+ N+ +NVE+N  R           HV   T+DWGD STWPV  +      DFVIG DLIY     PLL   + G+   G +         FLYVAPDTGRDGLPEF  ++   GF  ++ + AP+ Y+ NPL SG   +  L+FNEL    ++LYEFR++
Sbjct:  175 IRELPIAHADNPFGANPHEDTTGLGIWCASLVMARWMASPEMGSRFQGKNLCELGAGCAIPGLAAALYCPGNMPNRVYLTDLNEATMKNMKYNVEINCDRCQTCDAEEWRSHVQALTMDWGDKSTWPVVCKDDAGSIDFVIGSDLIYQASIVPLLKQVVVGLLTSGDSNDENSNPKSFLYVAPDTGRDGLPEFIESMKNDGFECVTEKVAPDEYRANPLKSGDADECFLHFNELSTSTYILYEFRKK 421          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A7S0PT27_9STRA (Hypothetical protein n=1 Tax=Asterionellopsis glacialis TaxID=33640 RepID=A0A7S0PT27_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.740e-57
Identity = 102/238 (42.86%), Postives = 147/238 (61.76%), Query Frame = 1
Query:  328 VRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNR-----------RRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCR-RGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNEL-QRPHMLYEF 1002
            +REL I +AD+PFG +  +D TG G+W A++ MARW+A P +S R     +LELGAGCGV GL+AA ++R  R+ +TDLNP T+ N+ HN++LN+           ++ H      V  +++DW D +TWP ++     DFVIG DLIY     PLL   + G+ + +GG FLYV PDTGRDGL +F  ++   G   ++   AP+ Y  NPL+S ++    L+F+EL    +MLYEF
Sbjct:  226 IRELPIAHADNPFGDKAIEDTTGYGIWCASLAMARWMATPDMSERFDNKTVLELGAGCGVPGLAAAFYSRAQRVYITDLNPTTIENMQHNIDLNQAQTAPVPSDEDKQPHQQWNERVIASSIDWDDETTWPDEK----LDFVIGSDLIYQSNIVPLLKKVVLGLLKPKGGRFLYVCPDTGRDGLDDFIKSMKSDGCCLVNECVAPQSYHANPLMSQNDDQCFLHFHELASSTYMLYEF 459          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A448ZDB8_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDB8_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.780e-50
Identity = 103/232 (44.40%), Postives = 140/232 (60.34%), Query Frame = 1
Query:  322 FEVRELAIRNADDPFGS--EPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVH--ARPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNELQR-PHMLYEF 1002
             ++RELA++NAD+PF     P QD TGL +W+A++VMARW+    ++   + +++LELG+GCGV GL  A    +RP R+ LTDLNP+TV NL +N+ELN  +        V    +DW D STWP ++     D VIG DLIY K   PLL + I G  + GG FLYV PDTGRDGL  F  A+  +       + AP+ Y  NPL +  + +  L+F EL    +MLYEF
Sbjct:  219 LKIRELAMKNADNPFADTDRPDQDTTGLSIWSASLVMARWMQAVGMTGYWKDSSVLELGSGCGVPGLMVATSDASRPRRMFLTDLNPQTVDNLRYNIELNEVQ------DFVEAKCMDWEDKSTWPEEK----VDHVIGSDLIYIKSLVPLLTSVIFGTIKPGGKFLYVCPDTGRDGLDAFVEAMKQK-CPGWVEQVAPKEYHSNPLTNEDDEECFLHFQELSSLTYMLYEF 439          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A7S4ER75_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER75_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.010e-49
Identity = 103/232 (44.40%), Postives = 141/232 (60.78%), Query Frame = 1
Query:  322 FEVRELAIRNADDPFGS--EPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVH--ARPSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNELQR-PHMLYEF 1002
             ++RELA++NAD+PF     P QD TGL +W+A++VMARW+     +   + +++LELG+GCGV GL  A    +RP ++ LTDLNP+TV NL +NVELN  +        V  + +DW D +TWP ++     DFVIG DLIY K   PLL + I G  + GG FLYV PDTGRDGL  F  A+  +       + AP+ Y  NPL +  + +  L+F EL    +MLYEF
Sbjct:  221 LKIRELAMKNADNPFADTERPDQDTTGLSIWSASLVMARWMQAVGKTGYWKDSSVLELGSGCGVPGLMVATSDSSRPRQIYLTDLNPQTVENLQYNVELNNVQ------DFVEASCMDWDDKATWPEEK----VDFVIGSDLIYIKTLVPLLTSVIFGTIKPGGKFLYVCPDTGRDGLDAFVEAMKNK-CPGWVEQVAPKQYHANPLTNEDDEECFLHFQELSSLTYMLYEF 441          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A1E7F664_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F664_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.220e-49
Identity = 102/233 (43.78%), Postives = 140/233 (60.09%), Query Frame = 1
Query:  322 FEVRELAIRNADDPFGS--EPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHAR---PSRLVLTDLNPETVANLAHNVELNRRRFHAAGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPLLSGSEGDYLLYFNELQR-PHMLYEF 1002
             ++RELA++NAD+PF     P QD TGL +W+A++VMARW+   A +   + +++LELG+GCGV GL  A  ++   P ++ LTDLNP+TV NL HN+ELN           V  + +DW D STWP ++     D+VIG DLIY K   PLL + I G  + GG FLYV PD GRDGL  F  A+  +     S + A + Y  NPL +  + +  L+F EL    +MLYEF
Sbjct:  234 LKIRELAMKNADNPFADTDRPDQDTTGLSIWSASLVMARWMKDKAKNDFWKDSSVLELGSGCGVPGLMVATSSQSSLPRKMYLTDLNPQTVENLQHNIELNEVN------DFVLSSCMDWDDQSTWPEEK----VDYVIGSDLIYIKTLVPLLMSVIFGTVKPGGKFLYVCPDKGRDGLDAFVEAMKSQ-CPGWSEQVASQDYHANPLTNDDDEECFLHFQELSSLTYMLYEF 455          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: A0A835YUX9_9STRA (Putative methyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX9_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.970e-47
Identity = 98/239 (41.00%), Postives = 138/239 (57.74%), Query Frame = 1
Query:  322 FEVRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHA-----AGGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALA--LRGFAALSAEQAPEHYKENPLLS--GSEGDYLLYFNEL-QRPHMLYEFRR 1008
              +RELAI+ A  PFG+      TGLG+W +++VMARWL    +   L+ A ++ELGAGCGV+GL+AAV+ R + +++TDLN  T+ NL HNVELNR   H      A    V VA LDW D ST+P          ++GCDL+YHK +   L      + R GG+ L V+P + RDG+ +    +     GF  + A+ AP+ Y  NPL    GS+  +LL+F++L    + L  FRR
Sbjct:    1 LRIRELAIQRASSPFGTGADAYTTGLGIWGSSLVMARWLTDAPMQKILKSATVVELGAGCGVAGLTAAVYTRAASVLMTDLNEATLDNLRHNVELNRTAAHTPPTPPALQCEVQVAALDWSDPSTYPPAGKAH---VLLGCDLVYHKESVAPLIRVARKLVRPGGSLLLVSPASNRDGMKQLLEGVLGPKGGFKLVGAQVAPQEYLSNPLTEAVGSDVQFLLHFSDLVDGRYRLLHFRR 236          
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Match: W7TI43_9STRA (Nicotinamide N-methyltransferase, putative n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TI43_9STRA)

HSP 1 Score: 174 bits (441), Expect = 5.310e-47
Identity = 106/256 (41.41%), Postives = 143/256 (55.86%), Query Frame = 1
Query:  292 LDADDGGPMSFEVRELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAILELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHAAG-GRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIAGMCRRGGTFLYVAPDTGRDGLPEFFAALALR-GFAALSAEQAPEHYKENPL-----LSGSEGD-------------YLLYFNELQRPHMLYE 999
            LD ++      ++RELAI +ADDPFG   + D TGLGVW AA+V+A+WL      + L  + I+ELG GC V GL+AA+H RP  + LTDLN ET+ N   N+ +NR  F        V V+ +DWGD  ++P    G   D V+G DL+Y K  APLLA  +  + R GG FLYVAP TGRDGL +F   L+ R G   +S ++A      NPL     + GS G              + L+FNEL    ++Y+
Sbjct:  198 LDRENDPDRVLQIRELAIEHADDPFGKAAADDTTGLGVWPAALVLAQWLVQERKEL-LDASTIVELGCGCAVPGLAAALHGRPRAVHLTDLNSETLMNARANLAMNRENFLVPETAACVHVSAMDWGDEQSYPPSAVG-AVDLVLGSDLVYQKSLAPLLAQVLCRLMRPGGRFLYVAPATGRDGLEDFVKGLSDRAGLFQVSEKEAGPKLLGNPLEGGGMVEGSTGSPQEEEAADSADQMFFLHFNELATQEVVYK 451          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig147.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K0R1V2_THAOC5.880e-6448.28Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4SA78_9STRA1.010e-6248.47Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
D7G640_ECTSI1.240e-6241.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2LND3_9STRA3.020e-6245.75Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0PT27_9STRA4.740e-5742.86Hypothetical protein n=1 Tax=Asterionellopsis glac... [more]
A0A448ZDB8_9STRA6.780e-5044.40Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S4ER75_9STRA1.010e-4944.40Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A1E7F664_9STRA5.220e-4943.78Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A835YUX9_9STRA1.970e-4741.00Putative methyltransferase-domain-containing prote... [more]
W7TI43_9STRA5.310e-4741.41Nicotinamide N-methyltransferase, putative n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig147contigP-wetherbeei_contig147:11918..13240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0R1V2
PFAMsAnk_2,Ank_3,Ank_4
Model size1011
Max annot lvl2759|Eukaryota
KEGG koko:K21413
Hectar predicted targeting categoryother localisation
Exons3
Evalue6.99e-65
EggNOG OGsCOG0666@1|root,KOG0507@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_005030.1
DescriptionAnkyrin repeat and sterile alpha motif
Cds size981
COG categoryBQ
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.8764637-CDS-P-wetherbeei_contig147:11917..122991683186030.8764637-CDS-P-wetherbeei_contig147:11917..12299Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 11918..12299 -
1683186030.8883781-CDS-P-wetherbeei_contig147:12494..128961683186030.8883781-CDS-P-wetherbeei_contig147:12494..12896Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 12495..12896 -
1683186030.8998795-CDS-P-wetherbeei_contig147:13013..132101683186030.8998795-CDS-P-wetherbeei_contig147:13013..13210Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig147 13014..13210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.9067593-UTR-P-wetherbeei_contig147:13210..132401683186030.9067593-UTR-P-wetherbeei_contig147:13210..13240Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig147 13211..13240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig147.8.1prot_P-wetherbeei_contig147.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig147 11918..13210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig147.8.1

>prot_P-wetherbeei_contig147.8.1 ID=prot_P-wetherbeei_contig147.8.1|Name=mRNA_P-wetherbeei_contig147.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=327bp
MVLEHQSAEEDMLLQASSLGSGKTAAGEAAGGGGGGNSGDGGSEEEDDDI
ADAADDRGAAGAERGATVAGAASSAAFGNAAAAASSGLDADDGGPMSFEV
RELAIRNADDPFGSEPSQDQTGLGVWAAAVVMARWLAGPALSVRLQGAAI
LELGAGCGVSGLSAAVHARPSRLVLTDLNPETVANLAHNVELNRRRFHAA
GGRHVFVATLDWGDTSTWPVQRSGEGFDFVIGCDLIYHKPAAPLLANAIA
GMCRRGGTFLYVAPDTGRDGLPEFFAALALRGFAALSAEQAPEHYKENPL
LSGSEGDYLLYFNELQRPHMLYEFRRR
back to top

mRNA from alignment at P-wetherbeei_contig147:11918..13240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig147.8.1 ID=mRNA_P-wetherbeei_contig147.8.1|Name=mRNA_P-wetherbeei_contig147.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1323bp|location=Sequence derived from alignment at P-wetherbeei_contig147:11918..13240- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTCAGCGGTGACCACGAGGTCGTGCGAATGGTGCTGGAGCACCAGAG CGCCGAGGAGGATATGCTGCTGCAGGCGAGCTCCCTCGGCAGCGGAAAGA CAGCCGCCGGGGAGGCAGCCGGCGGTGGCGGCGGCGGCAACAGCGGCGAT GGGGGTTCTGAGGAAGAGGATGACGACATTGCAGACGCTGCCGACGATCG GGGGGCGGCGGGCGCCGAGAGAGGCGCGTCGCTGGAGCTGGAAGACAAAG AGGAGGCGGAGGTGTTGCACGAGTTCGGCTTTGGAGAGCGCCGCGCTCCC TTGATGCCTCCGCCCGGTGCTAACGGCGATTGTGTCACGTCGAGAACGGT GGCAGGAGCGGCTTCATCTGCGGCGTTCGGCAACGCGGCCGCCGCTGCTT CTAGCGGCCTCGACGCGGATGATGGCGGCCCGATGAGCTTCGAGGTGCGG GAGCTGGCCATCCGCAATGCTGATGATCCCTTTGGCAGCGAGCCATCGCA GGACCAGACGGGGCTTGGCGTCTGGGCGGCGGCGGTGGTCATGGCCCGGT GGCTGGCGGGCCCAGCCTTGAGCGTGCGACTGCAGGGGGCGGCGATTCTG GAGCTCGGAGCCGGCTGCGGCGTCAGCGGCCTCTCCGCCGCTGTGCACGC CCGCCCCAGCCGGCTGGTGCTAACCGACCTGAACCCCGAGACGGTGGCCA ACCTCGCCCACAACGTCGAGCTGAACCGCCGGCGGTTCCACGCTGCGTCG CGGCCGCCACCACCGCCGGGGTCACCGTCGCCGAGCCCTTCGGGTGCGGC CGAGACGCCATCGAAGTCGCCGCCTTCAGCAGCAGCAGCGGCGGCGGCGG GTATGACGGGAGCAGGAGCGTCAGAAGGGGGAAGCAGCAGCGGCAGCAGC ACTGGCAGTGGTGGCAGCGGCAGCCTGGATGGCAGCTGGAGCGGCGGTAG GCACGTCTTCGTTGCGACACTCGACTGGGGCGACACCAGCACGTGGCCCG TGCAGCGCTCCGGCGAAGGCTTTGACTTTGTCATTGGGTGCGATTTGATC TACCACAAGCCAGCGGCGCCGCTGCTCGCGAACGCCATCGCCGGCATGTG CCGGCGCGGCGGAACCTTTCTCTACGTGGCCCCGGACACGGGCCGCGACG GACTGCCGGAATTCTTTGCGGCTCTAGCGCTGCGCGGCTTCGCGGCGCTG TCAGCGGAGCAGGCGCCGGAGCACTACAAGGAGAATCCGCTCTTGAGCGG CTCGGAGGGCGACTATTTGCTGTATTTCAACGAGCTGCAGCGGCCGCACA TGCTATACGAGTTCCGGCGGCGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig147:11918..13240-

>mRNA_P-wetherbeei_contig147.8.1 ID=mRNA_P-wetherbeei_contig147.8.1|Name=mRNA_P-wetherbeei_contig147.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=981bp|location=Sequence derived from alignment at P-wetherbeei_contig147:11918..13240- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGCTGGAGCACCAGAGCGCCGAGGAGGATATGCTGCTGCAGGCGAG
CTCCCTCGGCAGCGGAAAGACAGCCGCCGGGGAGGCAGCCGGCGGTGGCG
GCGGCGGCAACAGCGGCGATGGGGGTTCTGAGGAAGAGGATGACGACATT
GCAGACGCTGCCGACGATCGGGGGGCGGCGGGCGCCGAGAGAGGCGCAAC
GGTGGCAGGAGCGGCTTCATCTGCGGCGTTCGGCAACGCGGCCGCCGCTG
CTTCTAGCGGCCTCGACGCGGATGATGGCGGCCCGATGAGCTTCGAGGTG
CGGGAGCTGGCCATCCGCAATGCTGATGATCCCTTTGGCAGCGAGCCATC
GCAGGACCAGACGGGGCTTGGCGTCTGGGCGGCGGCGGTGGTCATGGCCC
GGTGGCTGGCGGGCCCAGCCTTGAGCGTGCGACTGCAGGGGGCGGCGATT
CTGGAGCTCGGAGCCGGCTGCGGCGTCAGCGGCCTCTCCGCCGCTGTGCA
CGCCCGCCCCAGCCGGCTGGTGCTAACCGACCTGAACCCCGAGACGGTGG
CCAACCTCGCCCACAACGTCGAGCTGAACCGCCGGCGGTTCCACGCTGCC
GGCGGTAGGCACGTCTTCGTTGCGACACTCGACTGGGGCGACACCAGCAC
GTGGCCCGTGCAGCGCTCCGGCGAAGGCTTTGACTTTGTCATTGGGTGCG
ATTTGATCTACCACAAGCCAGCGGCGCCGCTGCTCGCGAACGCCATCGCC
GGCATGTGCCGGCGCGGCGGAACCTTTCTCTACGTGGCCCCGGACACGGG
CCGCGACGGACTGCCGGAATTCTTTGCGGCTCTAGCGCTGCGCGGCTTCG
CGGCGCTGTCAGCGGAGCAGGCGCCGGAGCACTACAAGGAGAATCCGCTC
TTGAGCGGCTCGGAGGGCGACTATTTGCTGTATTTCAACGAGCTGCAGCG
GCCGCACATGCTATACGAGTTCCGGCGGCGG
back to top