mRNA_P-wetherbeei_contig1469.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1469.3.1
Unique NamemRNA_P-wetherbeei_contig1469.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: D7FRE3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRE3_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 2.090e-26
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 1 
Query:   58 EIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPMNAP 261
            E+ESA++ A  ++  RL+VQSLPIRAYLDQTVVPILLDGMSALVKERP NP++WL  YL++NNP +AP
Sbjct:   37 EVESAEQKATESLQDRLNVQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLGNYLLRNNPQSAP 104
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A7R9Y8P1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8P1_9STRA)

HSP 1 Score: 101 bits (251), Expect = 6.130e-26
Identity = 53/80 (66.25%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   19 AAEEAAPMPMAKEEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPMNA 258
            A EEAA  P A  E + A    A A+  R+++QSLPIRAYLDQTVVPILLDGMSALVKERP NP++WLAAYL+KNNP  +
Sbjct:   27 AVEEAAGPPAAVSEADQA----AQAVQDRMNLQSLPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLAAYLIKNNPQGS 102
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A225UT87_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UT87_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.040e-23
Identity = 46/67 (68.66%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   52 KEEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            ++E+++AD  AA ++  +++VQ+LPIRAYLDQTVVPILL GMSALVKERPANPI+WLA+YL+KNNP 
Sbjct:   71 EDEVKAADT-AAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPANPIEWLASYLIKNNPQ 136
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: G4ZVC7_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZVC7_PHYSP)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-23
Identity = 48/73 (65.75%), Postives = 57/73 (78.08%), Query Frame = 1 
Query:   34 APMPMAKEEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            AP   A E+   A   AA ++  +++VQ+LPIRAYLDQTVVPILL GMSALVKERP NPI+WLAAYL+KNNP 
Sbjct:   82 APASKADEDEVKAAEPAAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 154
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A024TXS2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXS2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.420e-23
Identity = 49/68 (72.06%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   49 AKEEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            AK   ++AD+ AA     +LDVQSLPIRAYLDQTVVPILL GMS+LVKERP NPI+WLAAYL+KNNP 
Sbjct:   41 AKNAEKAADQSAA-----KLDVQSLPIRAYLDQTVVPILLQGMSSLVKERPPNPIEWLAAYLIKNNPQ 103
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A482SE97_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SE97_9ARCH)

HSP 1 Score: 92.8 bits (229), Expect = 4.380e-23
Identity = 42/55 (76.36%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:   91 AIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPMN 255
            A  ++L++Q+LPIRAYLDQTVVP+LLDGMSALVKERP NPI+WLAAYL+K+NP N
Sbjct:   10 AAQEKLNLQALPIRAYLDQTVVPLLLDGMSALVKERPPNPIEWLAAYLLKHNPQN 64
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: H3G5G3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G5G3_PHYRM)

HSP 1 Score: 92.4 bits (228), Expect = 4.680e-23
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:   82 AAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            AA ++  +++VQ+LPIRAYLDQTVVPILL GMSALVKERP+NPI+WLA YL+KNNP 
Sbjct:    1 AAESVQDKVEVQALPIRAYLDQTVVPILLQGMSALVKERPSNPIEWLAGYLIKNNPQ 57
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A1W0A683_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A683_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 4.740e-23
Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   58 EIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            E ++A++ A      +LDVQ+LPIRAYLDQTVVPILL GMSALVKERP NPI+WLAAYL+KNNP 
Sbjct:   38 EAKNAEKAADQPPAAKLDVQALPIRAYLDQTVVPILLQGMSALVKERPPNPIEWLAAYLIKNNPQ 102
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A7S2GF22_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GF22_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.810e-23
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 1 
Query:   19 AAEEAAPMPMAKEEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPMNA 258
            AA+ AA    A +E+  A + AA  +  ++++Q+LPIRAYLDQTVVPILLDGMSALVKERP NP++WLA YL+KNNP  +
Sbjct:   52 AADPAAVADPASDEVAEATK-AAEQVQAKMNLQALPIRAYLDQTVVPILLDGMSALVKERPPNPVEWLATYLIKNNPQGS 130
[Close]
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Match: A0A5D6XHT8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHT8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.350e-23
Identity = 47/66 (71.21%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   55 EEIESADRGAAAAIDQRLDVQSLPIRAYLDQTVVPILLDGMSALVKERPANPIDWLAAYLVKNNPM 252
            +E++SA + AA  +  +++VQ LPIRAYLDQTVVPILL GMSALVKERPANPI+WLAAYL+KNNP 
Sbjct:   69 DEVKSAAK-AAENVQAKVEVQGLPIRAYLDQTVVPILLQGMSALVKERPANPIEWLAAYLIKNNPQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1469.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRE3_ECTSI2.090e-2670.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9Y8P1_9STRA6.130e-2666.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225UT87_9STRA1.040e-2368.66Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
G4ZVC7_PHYSP1.720e-2365.75Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A024TXS2_9STRA2.420e-2372.06Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A482SE97_9ARCH4.380e-2376.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
H3G5G3_PHYRM4.680e-2373.68Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A1W0A683_9STRA4.740e-2370.77Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2GF22_9STRA4.810e-2360.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A5D6XHT8_9STRA5.350e-2371.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1469contigP-wetherbeei_contig1469:2335..2604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FRE3
Preferred nameDPY30
PFAMsDpy-30
Model size270
Max annot lvl2759|Eukaryota
KEGG koko:K14965,ko:K14968
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0002682,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005794,GO:0005802,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006464,GO:0006479,GO:0006807,GO:0006810,GO:0006928,GO:0006996,GO:0007275,GO:0007548,GO:0007549,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0016043,GO:0016192,GO:0016197,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0030154,GO:0030317,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0031984,GO:0032259,GO:0032501,GO:0032502,GO:0032991,GO:0034401,GO:0034708,GO:0034968,GO:0035097,GO:0036211,GO:0040008,GO:0040011,GO:0040014,GO:0040029,GO:0042054,GO:0042464,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044665,GO:0044666,GO:0045138,GO:0045595,GO:0045637,GO:0045652,GO:0045814,GO:0045892,GO:0045934,GO:0046661,GO:0046907,GO:0046983,GO:0048188,GO:0048189,GO:0048519,GO:0048523,GO:0048638,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051568,GO:0051641,GO:0051649,GO:0051674,GO:0060255,GO:0060290,GO:0065007,GO:0070013,GO:0070828,GO:0070868,GO:0070869,GO:0071103,GO:0071704,GO:0071840,GO:0080090,GO:0090598,GO:0097549,GO:0097722,GO:0098791,GO:0140096,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1903706,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue3.42e-27
EggNOG OGsKOG4109@1|root,KOG4109@2759|Eukaryota
Ec32 ortholog descriptionDpy-30 motif
Ec32 orthologEc-21_002620.1
Descriptionchromatin silencing at telomere
Cds size270
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.2900822-CDS-P-wetherbeei_contig1469:2334..26041683186030.2900822-CDS-P-wetherbeei_contig1469:2334..2604Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1469 2335..2604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1469.3.1prot_P-wetherbeei_contig1469.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1469 2335..2604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1469.3.1

>prot_P-wetherbeei_contig1469.3.1 ID=prot_P-wetherbeei_contig1469.3.1|Name=mRNA_P-wetherbeei_contig1469.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
LHSDAGAAEEAAPMPMAKEEIESADRGAAAAIDQRLDVQSLPIRAYLDQT
VVPILLDGMSALVKERPANPIDWLAAYLVKNNPMNAPRE*
back to top

mRNA from alignment at P-wetherbeei_contig1469:2335..2604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1469.3.1 ID=mRNA_P-wetherbeei_contig1469.3.1|Name=mRNA_P-wetherbeei_contig1469.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig1469:2335..2604- (Phaeothamnion wetherbeei SAG_119_79)
CTCCATTCAGACGCCGGTGCCGCCGAAGAGGCCGCCCCTATGCCGATGGC
CAAGGAGGAGATCGAATCCGCAGACCGAGGAGCGGCAGCGGCCATAGATC
AGCGCCTCGACGTGCAGTCCCTTCCGATCCGCGCCTATTTGGATCAGACA
GTGGTGCCCATTTTGCTCGACGGCATGTCGGCGCTCGTCAAAGAGCGGCC
TGCAAACCCCATCGATTGGTTGGCGGCGTACCTGGTCAAAAACAACCCGA
TGAACGCCCCACGTGAGTAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1469:2335..2604-

>mRNA_P-wetherbeei_contig1469.3.1 ID=mRNA_P-wetherbeei_contig1469.3.1|Name=mRNA_P-wetherbeei_contig1469.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig1469:2335..2604- (Phaeothamnion wetherbeei SAG_119_79)
CTCCATTCAGACGCCGGTGCCGCCGAAGAGGCCGCCCCTATGCCGATGGC
CAAGGAGGAGATCGAATCCGCAGACCGAGGAGCGGCAGCGGCCATAGATC
AGCGCCTCGACGTGCAGTCCCTTCCGATCCGCGCCTATTTGGATCAGACA
GTGGTGCCCATTTTGCTCGACGGCATGTCGGCGCTCGTCAAAGAGCGGCC
TGCAAACCCCATCGATTGGTTGGCGGCGTACCTGGTCAAAAACAACCCGA
TGAACGCCCCACGTGAGTAA
back to top