mRNA_P-wetherbeei_contig14682.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14682.1.1
Unique NamemRNA_P-wetherbeei_contig14682.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: A0A2A4I8N7_9SPHN (Uncharacterized protein n=2 Tax=Sphingomonas adhaesiva TaxID=28212 RepID=A0A2A4I8N7_9SPHN)

HSP 1 Score: 94.0 bits (232), Expect = 3.510e-17
Identity = 94/149 (63.09%), Postives = 110/149 (73.83%), Query Frame = 1
Query:    7 VVSGTSGNDSFAATGLRESFQGGAGADTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            V+    G+D   A    E+F GG+G+DTVDYSA  AGV +DLA+G A GG A GDVLT +E + G +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   YS S++GVTVNL+TGV  GGDAAGD +SG E++ GSA AD
Sbjct: 2373 VIRAQGGDDMLVAGAGAETFDGGSGSDTVDYSASTAGVTIDLASGAAGGGFAQGDVLTAVEGVIGSAFDDVLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSASSSGVTVNLTTGVAAGGDAAGDQISGFEDILGSAQAD 2521          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: A0A0F2KS61_9PROT (Calcium-binding protein n=1 Tax=Azospirillum thiophilum TaxID=528244 RepID=A0A0F2KS61_9PROT)

HSP 1 Score: 88.6 bits (218), Expect = 2.180e-15
Identity = 87/127 (68.50%), Postives = 92/127 (72.44%), Query Frame = 1
Query:   73 GAGADTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            G G D  DYSA  AGV VDLAAGT AGG A GDVL GIEN+TG +            XXXXXXXXXXXXXXXXXXXXXXXXXXXTA+YS S  GV V+LS G   GGDA GD LSG+ENVTGSA AD
Sbjct: 1231 GDGIDLADYSASAAGVTVDLAAGTGAGGDAEGDVLAGIENVTGSAFGDRLTGDGAANXXXXXXXXXXXXXXXXXXXXXXXXXXXTADYSASTGGVAVDLSAGAGAGGDAEGDVLSGVENVTGSAAAD 1357          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: UPI001A96312D (hypothetical protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001A96312D)

HSP 1 Score: 86.3 bits (212), Expect = 1.260e-14
Identity = 87/123 (70.73%), Postives = 97/123 (78.86%), Query Frame = 1
Query:   85 DTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            D  DY   +AGV VDLAAGT  GG A GDVL+GIE+LTG S         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+YSGS+AGV V+L+TG+ TGGDA GDTLSGIEN+ GS+ AD
Sbjct: 3159 DRADYGTSSAGVRVDLAAGTGTGGDAEGDVLSGIEDLTGSSQDDRLSGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLADYSGSSAGVAVDLATGIGTGGDADGDTLSGIENLQGSSLAD 3281          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: A0A211ZGE9_9PROT (Uncharacterized protein n=1 Tax=Inquilinus limosus TaxID=171674 RepID=A0A211ZGE9_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 1.420e-14
Identity = 88/122 (72.13%), Postives = 96/122 (78.69%), Query Frame = 1
Query:   88 TVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            T  Y+   AGV +DLAAGTA GG A GD LT IENLTG S      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TA+Y  SAAG+ ++L+ G  TGGDA GDTLSGIENVTGSA+AD
Sbjct:  107 TASYAGSAAGVAIDLAAGTATGGDAQGDTLTSIENLTGSSLADALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTADYVASAAGIIIDLAAGTGTGGDAQGDTLSGIENVTGSASAD 228          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: A0A1X7MTR5_AZOLI (Ca2+-binding protein, RTX toxin-related n=2 Tax=Azospirillum TaxID=191 RepID=A0A1X7MTR5_AZOLI)

HSP 1 Score: 85.5 bits (210), Expect = 2.280e-14
Identity = 74/123 (60.16%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   85 DTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            D  DYSA  AGV VDL+AGT  GG A GDVLTG+EN+ G                      XXXXXXXXXXXXXXXXXXXTA+YS S  GVTV+L+TG  +GGDA GD LSGIEN+TGSA+ D
Sbjct: 1701 DMADYSASGAGVTVDLSAGTGVGGDAEGDVLTGVENIDGSDHDDYLTGDANANRLDGRGGNXXXXXXXXXXXXXXXXXXXTADYSASGGGVTVSLATGTGSGGDAQGDRLSGIENLTGSAHGD 1823          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: UPI001CE3B7EE (hypothetical protein n=1 Tax=Inquilinus sp. Marseille-Q2685 TaxID=2866581 RepID=UPI001CE3B7EE)

HSP 1 Score: 84.7 bits (208), Expect = 2.720e-14
Identity = 90/124 (72.58%), Postives = 96/124 (77.42%), Query Frame = 1
Query:   85 DTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANADT 456
            DT  Y    AGV VDL+AGTA+GG A GD LTGIENLTG        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  ANY GSAAGVTV+L  G   GGDA GDTL+GIEN+ GS+NADT
Sbjct:  249 DTAFYGESAAGVTVDLSAGTASGGDAEGDTLTGIENLTGSDSTDHLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFANYQGSAAGVTVDLLAGTALGGDADGDTLTGIENLYGSSNADT 372          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: G7ZGF9_AZOL4 (Cadherin domain-containing protein n=1 Tax=Azospirillum lipoferum (strain 4B) TaxID=862719 RepID=G7ZGF9_AZOL4)

HSP 1 Score: 85.1 bits (209), Expect = 3.060e-14
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 1
Query:   88 TVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            + DY+A   GVDV+LAAGT +GG A GD+LTGIENLTG +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    A+YS SAAGV V+LSTG   GGDA GD LSGIEN+TGSA+ D
Sbjct: 1157 SADYAASTGGVDVNLAAGTGSGGDAEGDLLTGIENLTGSAHDDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIDLADYSASAAGVAVDLSTGTGLGGDAEGDLLSGIENLTGSAHDD 1278          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: A0A2U1WKZ0_9PROT (Calcium-binding protein (Fragment) n=1 Tax=Azospirillum sp. TSA6c TaxID=709813 RepID=A0A2U1WKZ0_9PROT)

HSP 1 Score: 84.3 bits (207), Expect = 5.400e-14
Identity = 87/122 (71.31%), Postives = 92/122 (75.41%), Query Frame = 1
Query:   88 TVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            T DYSA  AGV VDLAAGTAAGG A GDVL+ IENLTG           XXXXXXXXXXXXXXXXXXXXXXXXXXXX   A+YS SA GVTV+LS+G   GGDA GD LSGIEN+TGSA  D
Sbjct: 1078 TADYSASAAGVSVDLAAGTAAGGDAEGDVLSDIENLTGSDHDDLLVGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDLADYSASADGVTVDLSSGTGIGGDADGDRLSGIENLTGSAFGD 1199          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: UPI001EE6DDB3 (calcium-binding protein n=1 Tax=Inquilinus limosus TaxID=171674 RepID=UPI001EE6DDB3)

HSP 1 Score: 83.6 bits (205), Expect = 6.020e-14
Identity = 88/124 (70.97%), Postives = 100/124 (80.65%), Query Frame = 1
Query:   85 DTVDYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANADT 456
            DTVDY+  +AGV +DLAAGT +GG A GD L+ IEN+TG +      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ANY GS+A V VNL T VNTGGDAAGDTL+ IEN+ GS++ DT
Sbjct:  165 DTVDYTTSSAGVTIDLAAGTGSGGDAQGDTLSLIENVTGSAFTDHLYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFANYQGSSAAVNVNLLTNVNTGGDAAGDTLANIENLYGSSHDDT 288          
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Match: UPI001C99D396 (Ig-like domain-containing protein n=1 Tax=Azospirillum sp. 412522 TaxID=2494548 RepID=UPI001C99D396)

HSP 1 Score: 83.6 bits (205), Expect = 9.880e-14
Identity = 84/120 (70.00%), Postives = 91/120 (75.83%), Query Frame = 1
Query:   94 DYSADNAGVDVDLAAGTAAGGLAAGDVLTGIENLTGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANAD 453
            DYSA   GV +DLAAGTAAGG A GD+LT IENLTG             XXXXXXXXXXXXXXXXXXXXXXXXXXX  A+YS SA GV+V+LS+GV TGGDA GD LSGIEN+TGSA  D
Sbjct: 1080 DYSASAGGVSIDLAAGTAAGGDAEGDMLTDIENLTGSDQDDLLVGDANAXXXXXXXXXXXXXXXXXXXXXXXXXXXDLADYSASADGVSVDLSSGVGTGGDAEGDRLSGIENLTGSAFGD 1199          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14682.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2A4I8N7_9SPHN3.510e-1763.09Uncharacterized protein n=2 Tax=Sphingomonas adhae... [more]
A0A0F2KS61_9PROT2.180e-1568.50Calcium-binding protein n=1 Tax=Azospirillum thiop... [more]
UPI001A96312D1.260e-1470.73hypothetical protein n=1 Tax=Arenibaculum pallidil... [more]
A0A211ZGE9_9PROT1.420e-1472.13Uncharacterized protein n=1 Tax=Inquilinus limosus... [more]
A0A1X7MTR5_AZOLI2.280e-1460.16Ca2+-binding protein, RTX toxin-related n=2 Tax=Az... [more]
UPI001CE3B7EE2.720e-1472.58hypothetical protein n=1 Tax=Inquilinus sp. Marsei... [more]
G7ZGF9_AZOL43.060e-1472.13Cadherin domain-containing protein n=1 Tax=Azospir... [more]
A0A2U1WKZ0_9PROT5.400e-1471.31Calcium-binding protein (Fragment) n=1 Tax=Azospir... [more]
UPI001EE6DDB36.020e-1470.97calcium-binding protein n=1 Tax=Inquilinus limosus... [more]
UPI001C99D3969.880e-1470.00Ig-like domain-containing protein n=1 Tax=Azospiri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14682contigP-wetherbeei_contig14682:2..1048 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1123060.JONP01000007_gene5149
PFAMsHemolysinCabind
Model size1047
Max annot lvl204441|Rhodospirillales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.6e-12
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,1MU7T@1224|Proteobacteria,2TRVY@28211|Alphaproteobacteria,2JRKY@204441|Rhodospirillales
DescriptionCOG2931 RTX toxins and related Ca2 -binding proteins
Cds size1047
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186030.148713-CDS-P-wetherbeei_contig14682:1..10481683186030.148713-CDS-P-wetherbeei_contig14682:1..1048Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14682 2..1048 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14682.1.1prot_P-wetherbeei_contig14682.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14682 2..1048 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14682.1.1

>prot_P-wetherbeei_contig14682.1.1 ID=prot_P-wetherbeei_contig14682.1.1|Name=mRNA_P-wetherbeei_contig14682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=349bp
ALVVSGTSGNDSFAATGLRESFQGGAGADTVDYSADNAGVDVDLAAGTAA
GGLAAGDVLTGIENLTGGSGADALTGDAAANRLEGGAGDDKLTGGAGADT
LVGGSGTDTANYSGSAAGVTVNLSTGVNTGGDAAGDTLSGIENVTGSANA
DTLTGDANANLLEGLAGNDRLDGGAGDDTLVGGLGADTLIGGTGIDTATY
ATAAAGVTASLATATGTAGEASGDTYATIENLEGSAFADTLTGDTNANVL
TGNAGDDVLLGGAGADTLAGGAGNDTASYSTSSASVTVDLSTGAGTQGDA
AGDVLSGIETLIGGSGADTFTGDANANRIDGGAGNDTISGDAGADTLVG
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mRNA from alignment at P-wetherbeei_contig14682:2..1048-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14682.1.1 ID=mRNA_P-wetherbeei_contig14682.1.1|Name=mRNA_P-wetherbeei_contig14682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-wetherbeei_contig14682:2..1048- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGTCGTCTCCGGTACGTCGGGCAACGACAGCTTCGCCGCGACGGG CCTGCGCGAATCCTTCCAGGGCGGTGCCGGCGCCGACACGGTCGACTACT CGGCCGACAATGCCGGCGTGGATGTCGATCTCGCCGCCGGCACGGCCGCG GGCGGGCTCGCCGCGGGCGACGTGCTGACCGGCATCGAGAACCTGACCGG CGGCAGCGGCGCCGACGCGCTGACGGGCGACGCGGCCGCCAACCGCCTCG AGGGCGGGGCCGGCGACGACAAGCTGACCGGCGGGGCGGGCGCGGACACG CTGGTCGGCGGCTCCGGCACCGACACGGCGAACTATTCGGGTTCGGCCGC CGGCGTCACGGTCAATCTTTCGACCGGCGTGAACACCGGCGGCGATGCCG CGGGCGACACGCTGTCGGGCATCGAGAACGTCACCGGCTCGGCGAACGCC GATACGCTGACCGGCGACGCGAATGCCAACCTTCTCGAAGGCCTTGCCGG CAACGACCGCCTCGACGGCGGGGCGGGCGACGACACGCTGGTCGGCGGCC TGGGTGCGGACACGCTGATCGGCGGCACGGGCATCGACACGGCGACCTAT GCGACCGCCGCGGCCGGCGTGACCGCGAGCCTCGCGACCGCGACGGGGAC CGCCGGCGAGGCGTCGGGCGACACCTACGCCACCATCGAGAATCTCGAAG GCTCGGCCTTCGCCGACACGCTGACGGGCGATACGAACGCCAACGTGCTG ACCGGCAACGCCGGCGACGACGTGCTGCTCGGCGGGGCCGGGGCCGACAC GCTGGCGGGCGGGGCGGGTAACGATACGGCAAGCTATTCCACGTCGAGCG CATCGGTGACGGTCGACCTGTCGACCGGTGCGGGCACGCAGGGCGACGCG GCCGGCGACGTGCTGTCGGGCATCGAGACGCTGATCGGCGGTTCGGGCGC CGACACCTTCACCGGCGACGCGAACGCCAACCGGATCGACGGCGGGGCCG GCAACGACACGATTTCGGGCGATGCGGGTGCGGATACGCTGGTCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14682:2..1048-

>mRNA_P-wetherbeei_contig14682.1.1 ID=mRNA_P-wetherbeei_contig14682.1.1|Name=mRNA_P-wetherbeei_contig14682.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1047bp|location=Sequence derived from alignment at P-wetherbeei_contig14682:2..1048- (Phaeothamnion wetherbeei SAG_119_79)
GCGCTCGTCGTCTCCGGTACGTCGGGCAACGACAGCTTCGCCGCGACGGG
CCTGCGCGAATCCTTCCAGGGCGGTGCCGGCGCCGACACGGTCGACTACT
CGGCCGACAATGCCGGCGTGGATGTCGATCTCGCCGCCGGCACGGCCGCG
GGCGGGCTCGCCGCGGGCGACGTGCTGACCGGCATCGAGAACCTGACCGG
CGGCAGCGGCGCCGACGCGCTGACGGGCGACGCGGCCGCCAACCGCCTCG
AGGGCGGGGCCGGCGACGACAAGCTGACCGGCGGGGCGGGCGCGGACACG
CTGGTCGGCGGCTCCGGCACCGACACGGCGAACTATTCGGGTTCGGCCGC
CGGCGTCACGGTCAATCTTTCGACCGGCGTGAACACCGGCGGCGATGCCG
CGGGCGACACGCTGTCGGGCATCGAGAACGTCACCGGCTCGGCGAACGCC
GATACGCTGACCGGCGACGCGAATGCCAACCTTCTCGAAGGCCTTGCCGG
CAACGACCGCCTCGACGGCGGGGCGGGCGACGACACGCTGGTCGGCGGCC
TGGGTGCGGACACGCTGATCGGCGGCACGGGCATCGACACGGCGACCTAT
GCGACCGCCGCGGCCGGCGTGACCGCGAGCCTCGCGACCGCGACGGGGAC
CGCCGGCGAGGCGTCGGGCGACACCTACGCCACCATCGAGAATCTCGAAG
GCTCGGCCTTCGCCGACACGCTGACGGGCGATACGAACGCCAACGTGCTG
ACCGGCAACGCCGGCGACGACGTGCTGCTCGGCGGGGCCGGGGCCGACAC
GCTGGCGGGCGGGGCGGGTAACGATACGGCAAGCTATTCCACGTCGAGCG
CATCGGTGACGGTCGACCTGTCGACCGGTGCGGGCACGCAGGGCGACGCG
GCCGGCGACGTGCTGTCGGGCATCGAGACGCTGATCGGCGGTTCGGGCGC
CGACACCTTCACCGGCGACGCGAACGCCAACCGGATCGACGGCGGGGCCG
GCAACGACACGATTTCGGGCGATGCGGGTGCGGATACGCTGGTCGGC
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