mRNA_P-wetherbeei_contig14664.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14664.1.1
Unique NamemRNA_P-wetherbeei_contig14664.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A835ZGB8_9STRA (DUF202 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGB8_9STRA)

HSP 1 Score: 116 bits (291), Expect = 6.540e-32
Identity = 53/74 (71.62%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYEL 222
            +FADHN WS+VYGLV+MPVAV+FV+YAL QYMRRA +IR+RAPGPY+D  GP VLAT+L V II N ++KLYEL
Sbjct:   61 AFADHNPWSQVYGLVLMPVAVAFVLYALYQYMRRAKLIRQRAPGPYEDNVGPTVLATMLMVAIILNVTIKLYEL 134          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A7S2V667_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V667_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.350e-26
Identity = 45/74 (60.81%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYEL 222
            +FA+HNEWS+VYGL+++PVA+ F +YAL  ++RR+SMIRRR PGPYDD  GP  LA +L V II NFS+K+Y++
Sbjct:  127 AFAEHNEWSQVYGLLILPVAILFCMYALYNFLRRSSMIRRRDPGPYDDALGPSFLALILMVSIILNFSVKIYDM 200          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A8J9X6S5_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X6S5_PHATR)

HSP 1 Score: 97.8 bits (242), Expect = 9.280e-25
Identity = 40/72 (55.56%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   10 DHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYELL 225
            D+N +S++YG++++PVA+SF++Y++ QY RRA+MIR R PGPY+D  GPVVL  +L V I+A FSLKLY ++
Sbjct:   39 DNNPFSQLYGVILLPVAISFIVYSMYQYARRANMIRHRHPGPYEDTVGPVVLGIMLMVSIVAQFSLKLYSMI 110          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A7S4RA87_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA87_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.720e-24
Identity = 42/75 (56.00%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYELL 225
            +FAD N WS++YG++++PVAV+F+ YA+ QY RRA MIRR+ PGPY+D+ GP VL  +L + I+A FS+KLYE++
Sbjct:  175 AFADANPWSQLYGVLLIPVAVAFICYAMYQYARRADMIRRKDPGPYEDLFGPTVLGIMLMLSIVAQFSIKLYEIM 249          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A6U0VIR0_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0VIR0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.830e-24
Identity = 40/74 (54.05%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYEL 222
            +FADH  WS+VYGL+++PVA++F +Y+L  Y RRA+MIRRR PGPY+D  GP++L T+L V I+  F++K+Y++
Sbjct:  119 AFADHKGWSQVYGLLLLPVAIAFSVYSLFIYQRRAAMIRRRDPGPYEDRVGPILLGTILMVAIVLQFAVKVYDM 192          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A7S2EKG3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKG3_TRICV)

HSP 1 Score: 99.4 bits (246), Expect = 8.250e-24
Identity = 41/75 (54.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYELL 225
            SFA  N  S++YG++++P++++F+ YA++QY RRASMIRRRAPGPY+D+ GP VL  +L + I+A FS+KLY +L
Sbjct:  185 SFARANPLSQLYGIILLPISIAFISYAMIQYARRASMIRRRAPGPYEDIMGPTVLGIILMLSIVAQFSIKLYSVL 259          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: W7TJ28_9STRA (DUF202 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJ28_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 5.180e-23
Identity = 44/75 (58.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYELL 225
            +FADHNE+S++YG  ++PVAV+FVIYAL  Y RR+ M+R R PGPY+D  GPVVL  LL + I  NF LKL ++L
Sbjct:  156 AFADHNEFSQIYGFTVLPVAVAFVIYALTTYTRRSFMLRNRMPGPYEDRVGPVVLTLLLCLSITVNFILKLIDIL 230          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A7S2P5P1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5P1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.990e-22
Identity = 39/74 (52.70%), Postives = 57/74 (77.03%), Query Frame = 1
Query:    1 SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYEL 222
            SF+  N WS++YG++++P A++F++YAL QY RRA MI+RR PGPY+D+ GP VLA +L + I  +F +KLY L
Sbjct:  126 SFSQSNPWSQIYGILLLPCAIAFILYALRQYTRRAKMIKRREPGPYEDLWGPTVLALMLMMSITVSFFVKLYSL 199          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: B8C399_THAPS (DUF202 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C399_THAPS)

HSP 1 Score: 90.1 bits (222), Expect = 1.020e-21
Identity = 34/66 (51.52%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   28 EVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYELL 225
            ++YG++++PV+++F++YA++QY RRA+MIRR++PGPY D+AGP VL  +L + I+A F++KLY L+
Sbjct:   47 QLYGIILLPVSIAFILYAMIQYSRRATMIRRKSPGPYVDIAGPTVLTVILMLSIVAQFTIKLYTLM 112          
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Match: A0A7S3LDJ1_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LDJ1_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.720e-21
Identity = 38/71 (53.52%), Postives = 56/71 (78.87%), Query Frame = 1
Query:   10 DHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVAGPVVLATLLAVGIIANFSLKLYEL 222
            D+N  S++YG++++PVA++F++Y++ QY RRA+MIR R PGPY+D  GPVVL  +L   I+A F+LKLY L
Sbjct:  161 DNNPLSQMYGVILLPVAIAFIVYSMYQYARRATMIRTRHPGPYEDTTGPVVLGVMLMTSIVAQFALKLYAL 231          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14664.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZGB8_9STRA6.540e-3271.62DUF202 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S2V667_9STRA1.350e-2660.81Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J9X6S5_PHATR9.280e-2555.56Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S4RA87_9STRA1.720e-2456.00Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A6U0VIR0_9STRA2.830e-2454.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2EKG3_TRICV8.250e-2454.67Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
W7TJ28_9STRA5.180e-2358.67DUF202 domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S2P5P1_9STRA2.990e-2252.70Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
B8C399_THAPS1.020e-2151.52DUF202 domain-containing protein (Fragment) n=1 Ta... [more]
A0A7S3LDJ1_9STRA1.720e-2153.52Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14664contigP-wetherbeei_contig14664:1172..1402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr15281
PFAMsDUF202
Model size231
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.52e-25
EggNOG OGsCOG5264@1|root,KOG4580@2759|Eukaryota,2XGPS@2836|Bacillariophyta
DescriptionDomain of unknown function (DUF202)
Cds size231
COG categoryOU
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.4640956-CDS-P-wetherbeei_contig14664:1171..14021683186029.4640956-CDS-P-wetherbeei_contig14664:1171..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14664 1172..1402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14664.1.1prot_P-wetherbeei_contig14664.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14664 1172..1402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14664.1.1

>prot_P-wetherbeei_contig14664.1.1 ID=prot_P-wetherbeei_contig14664.1.1|Name=mRNA_P-wetherbeei_contig14664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=77bp
SFADHNEWSEVYGLVMMPVAVSFVIYALVQYMRRASMIRRRAPGPYDDVA
GPVVLATLLAVGIIANFSLKLYELLY*
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mRNA from alignment at P-wetherbeei_contig14664:1172..1402-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14664.1.1 ID=mRNA_P-wetherbeei_contig14664.1.1|Name=mRNA_P-wetherbeei_contig14664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig14664:1172..1402- (Phaeothamnion wetherbeei SAG_119_79)
AGCTTCGCGGATCACAACGAATGGTCAGAGGTCTATGGCCTGGTGATGAT GCCCGTCGCTGTCTCGTTCGTAATCTACGCCCTGGTGCAGTACATGCGCC GCGCCTCAATGATCCGGCGGCGGGCGCCGGGCCCCTACGACGACGTCGCC GGCCCCGTCGTGCTCGCAACGCTCCTCGCCGTGGGGATCATCGCCAACTT TAGCCTCAAATTGTATGAGCTTCTCTATTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14664:1172..1402-

>mRNA_P-wetherbeei_contig14664.1.1 ID=mRNA_P-wetherbeei_contig14664.1.1|Name=mRNA_P-wetherbeei_contig14664.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig14664:1172..1402- (Phaeothamnion wetherbeei SAG_119_79)
AGCTTCGCGGATCACAACGAATGGTCAGAGGTCTATGGCCTGGTGATGAT
GCCCGTCGCTGTCTCGTTCGTAATCTACGCCCTGGTGCAGTACATGCGCC
GCGCCTCAATGATCCGGCGGCGGGCGCCGGGCCCCTACGACGACGTCGCC
GGCCCCGTCGTGCTCGCAACGCTCCTCGCCGTGGGGATCATCGCCAACTT
TAGCCTCAAATTGTATGAGCTTCTCTATTGA
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