mRNA_P-wetherbeei_contig1466.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1466.1.1
Unique NamemRNA_P-wetherbeei_contig1466.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: K8ZBP1_NANGC (Ubiquilin n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZBP1_NANGC)

HSP 1 Score: 88.6 bits (218), Expect = 1.220e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  154 TINIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            +I IKTL+ GDF+L V   + V  +K+ VKD T +PE RQRLIYRGRVLQDG+ LS+Y V+ GHT+H V+RP
Sbjct:   12 SITIKTLQLGDFQLQVPAESSVSALKVQVKDCTQIPEERQRLIYRGRVLQDGEHLSTYNVEAGHTIHCVARP 83
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BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A024TS32_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TS32_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.190e-17
Identity = 43/77 (55.84%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRPPPEQMP 387
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GHTVHMV+RP   Q P
Sbjct:   50 IRIKTLNDHTFSLTVARSVSIRDLKTTLQTTTAVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHTVHMVARPDRAQQP 126
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BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A4D9D8J0_9STRA (Ubiquitin-like domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8J0_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.610e-17
Identity = 43/72 (59.72%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:  154 TINIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            +I IKTL+ GDF+L V   + V  +K+ VKD T +PE RQRLIYRGRVLQDG+ LS+Y V+ GHT+H V+RP
Sbjct:    3 SITIKTLQLGDFQLQVPAESSVSALKVQVKDCTQIPEERQRLIYRGRVLQDGEHLSTYNVEAGHTIHCVARP 74
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BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A397ATW3_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ATW3_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.300e-16
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GH VHMV+RP
Sbjct:   17 IRIKTLNDHTFSLTVPRAISIRDLKTTLQGTTSVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARP 87
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BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A418BFX6_9STRA (Ubiquitin-like domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BFX6_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 6.280e-16
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GH VHMV+RP
Sbjct:   29 IRIKTLNDHTFSLTVPRAISIRDLKTTLQGTTSVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: W4FQX5_9STRA (Ubiquitin-like domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQX5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.560e-15
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GH VHMV+RP
Sbjct:   29 IRIKTLNDHTFSLTVPRAISIRDLKTTLQGTTSVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A397AFV9_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AFV9_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.760e-15
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GH VHMV+RP
Sbjct:   29 IRIKTLNDHTFSLTVPRAISIRDLKTTLQGTTSVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: W4FPF8_9STRA (Ubiquitin-like domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPF8_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.080e-15
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:  157 INIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            I IKTL +  F LTV R   ++D+K  ++  T VP  RQRLIYRG++L+DGDLLS+Y V+ GH VHMV+RP
Sbjct:   29 IRIKTLNDHTFSLTVPRAISIRDLKTTLQGTTSVPPQRQRLIYRGKLLRDGDLLSAYNVEDGHMVHMVARP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A7S2GR18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GR18_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 7.430e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  139 DPESYTINIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            D +   I +KT+    + L V R  L+  +K  +KD  GV   RQRLIYRG+VLQD D+LS Y++Q GHTVHMV+RP
Sbjct:   18 DEDEIKICVKTISNDTYDLNVTRAMLISVLKSRIKDTVGVDAERQRLIYRGKVLQDQDMLSKYKIQDGHTVHMVARP 94
[Close]
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Match: A0A7S2GNI3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNI3_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.300e-15
Identity = 39/77 (50.65%), Postives = 51/77 (66.23%), Query Frame = 1 
Query:  139 DPESYTINIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRLIYRGRVLQDGDLLSSYRVQPGHTVHMVSRP 369
            D +   I +KT+    + L V R  L+  +K  +KD  GV   RQRLIYRG+VLQD D+LS Y++Q GHTVHMV+RP
Sbjct:   18 DEDEIKICVKTISNDTYDLNVTRAMLISVLKSRIKDTVGVDAERQRLIYRGKVLQDQDMLSKYKIQDGHTVHMVARP 94
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1466.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8ZBP1_NANGC1.220e-1759.72Ubiquilin n=1 Tax=Nannochloropsis gaditana (strain... [more]
A0A024TS32_9STRA4.190e-1755.84Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A4D9D8J0_9STRA4.610e-1759.72Ubiquitin-like domain-containing protein n=3 Tax=M... [more]
A0A397ATW3_9STRA2.300e-1656.34Ubiquitin-like domain-containing protein n=2 Tax=A... [more]
A0A418BFX6_9STRA6.280e-1656.34Ubiquitin-like domain-containing protein n=3 Tax=A... [more]
W4FQX5_9STRA2.560e-1556.34Ubiquitin-like domain-containing protein n=1 Tax=A... [more]
A0A397AFV9_9STRA2.760e-1556.34Ubiquitin-like domain-containing protein n=2 Tax=A... [more]
W4FPF8_9STRA3.080e-1556.34Ubiquitin-like domain-containing protein n=2 Tax=A... [more]
A0A7S2GR18_9STRA7.430e-1550.65Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2GNI3_9STRA8.300e-1550.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1466contigP-wetherbeei_contig1466:1082..1831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog157072.XP_008874601.1
Preferred nameBAG6
PFAMsDUF3538,ubiquitin
Model size564
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0001655,GO:0001775,GO:0001822,GO:0002020,GO:0002253,GO:0002376,GO:0002429,GO:0002474,GO:0002682,GO:0002684,GO:0002757,GO:0002764,GO:0002768,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006473,GO:0006475,GO:0006508,GO:0006511,GO:0006515,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007029,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007130,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008630,GO:0009056,GO:0009057,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010604,GO:0010605,GO:0010941,GO:0012501,GO:0016020,GO:0016043,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019222,GO:0019538,GO:0019882,GO:0019899,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0023052,GO:0030101,GO:0030162,GO:0030163,GO:0030323,GO:0030324,GO:0030433,GO:0030544,GO:0031072,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031331,GO:0031593,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034976,GO:0035295,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036506,GO:0042127,GO:0042176,GO:0042177,GO:0042221,GO:0042771,GO:0042802,GO:0042981,GO:0043021,GO:0043022,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045048,GO:0045132,GO:0045143,GO:0045184,GO:0045321,GO:0045732,GO:0045861,GO:0045862,GO:0045995,GO:0046649,GO:0048002,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051205,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051276,GO:0051321,GO:0051603,GO:0051641,GO:0051704,GO:0051716,GO:0051787,GO:0051788,GO:0060255,GO:0060322,GO:0060541,GO:0060548,GO:0061024,GO:0061136,GO:0061857,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070062,GO:0070192,GO:0070193,GO:0070628,GO:0070727,GO:0070887,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0071816,GO:0071818,GO:0071840,GO:0072001,GO:0072331,GO:0072332,GO:0072379,GO:0072657,GO:0080090,GO:0080134,GO:0080135,GO:0090150,GO:0097190,GO:0097193,GO:0098813,GO:0140013,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901799,GO:1901800,GO:1903046,GO:1903050,GO:1903051,GO:1903052,GO:1903362,GO:1903363,GO:1903364,GO:1903561,GO:1904292,GO:1904294,GO:1904327,GO:1904378,GO:1904379,GO:1905897,GO:1905898,GO:1990381,GO:2000026,GO:2000058,GO:2000059
Exons2
Evalue1.78e-18
EggNOG OGsKOG4248@1|root,KOG4248@2759|Eukaryota
Descriptionendoplasmic reticulum stress-induced pre-emptive quality control
Cds size435
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.245073-CDS-P-wetherbeei_contig1466:1081..14021683186029.245073-CDS-P-wetherbeei_contig1466:1081..1402Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1466 1082..1402 -
1683186029.2538095-CDS-P-wetherbeei_contig1466:1588..17021683186029.2538095-CDS-P-wetherbeei_contig1466:1588..1702Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1466 1589..1702 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.2686045-UTR-P-wetherbeei_contig1466:1702..18311683186029.2686045-UTR-P-wetherbeei_contig1466:1702..1831Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1466 1703..1831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1466.1.1prot_P-wetherbeei_contig1466.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1466 1082..1702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1466.1.1

>prot_P-wetherbeei_contig1466.1.1 ID=prot_P-wetherbeei_contig1466.1.1|Name=mRNA_P-wetherbeei_contig1466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MEEDPESYTINIKTLREGDFRLTVLRRTLVQDVKINVKDKTGVPETRQRL
IYRGRVLQDGDLLSSYRVQPGHTVHMVSRPPPEQMPHAAPTAAAAGGGAG
LSPPSLAAAAARATAPRLGGAAAASLWEGGGGDDGGRGGGGWEDD
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mRNA from alignment at P-wetherbeei_contig1466:1082..1831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1466.1.1 ID=mRNA_P-wetherbeei_contig1466.1.1|Name=mRNA_P-wetherbeei_contig1466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=750bp|location=Sequence derived from alignment at P-wetherbeei_contig1466:1082..1831- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTAAAGAGGTCGCACAAAGCATCGAGAAATTCTGGCTTCGACGTCCC
TGGGGAGATGCGCCGGCGGTGAAAGCCGTCGCCGCACTCTTCTTCCTTCC
TCTTTTTGAGGAAAAGAGTGTGACCAACGATGGAGGAAGATCCGGAGTCG
TACACGATAAACATAAAAACGCTGCGTGAGGGCGACTTCCGGCTGACTGT
GCTGCGGCGCACGCTCGTGCAGGATGTGAAGATCAATGTCAAGGTCAGTC
TTTGCGCGTTGCTAGGTTTGTCCCAGAGCTTTCACACGAGCGGCCTTTGG
CATACCTGAAAACCCTTGCTATCCTGCATTGGCGCGCGCAGCTGCGCACG
TAGCCCTCCGCCTTGTACATTTCTAATGCCTGTTTCTCGAATGCCTCTGG
GCAAATTTCGACCTGATTTATAAGCACAGGACAAAACCGGCGTGCCGGAA
ACGCGGCAGCGGCTCATCTACCGCGGGCGCGTGCTGCAGGATGGCGACTT
GTTGTCGTCCTACCGCGTCCAGCCCGGCCACACCGTCCACATGGTCAGCC
GCCCCCCGCCGGAGCAGATGCCTCATGCTGCCCCCACAGCAGCCGCGGCC
GGTGGTGGCGCCGGGCTTTCGCCTCCGTCGTTGGCGGCGGCGGCAGCGAG
GGCGACGGCGCCCCGCCTCGGCGGTGCCGCCGCCGCCTCGCTTTGGGAAG
GTGGCGGCGGCGATGACGGCGGCAGAGGCGGTGGTGGGTGGGAAGACGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1466:1082..1831-

>mRNA_P-wetherbeei_contig1466.1.1 ID=mRNA_P-wetherbeei_contig1466.1.1|Name=mRNA_P-wetherbeei_contig1466.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig1466:1082..1831- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGGAAGATCCGGAGTCGTACACGATAAACATAAAAACGCTGCGTGA
GGGCGACTTCCGGCTGACTGTGCTGCGGCGCACGCTCGTGCAGGATGTGA
AGATCAATGTCAAGGACAAAACCGGCGTGCCGGAAACGCGGCAGCGGCTC
ATCTACCGCGGGCGCGTGCTGCAGGATGGCGACTTGTTGTCGTCCTACCG
CGTCCAGCCCGGCCACACCGTCCACATGGTCAGCCGCCCCCCGCCGGAGC
AGATGCCTCATGCTGCCCCCACAGCAGCCGCGGCCGGTGGTGGCGCCGGG
CTTTCGCCTCCGTCGTTGGCGGCGGCGGCAGCGAGGGCGACGGCGCCCCG
CCTCGGCGGTGCCGCCGCCGCCTCGCTTTGGGAAGGTGGCGGCGGCGATG
ACGGCGGCAGAGGCGGTGGTGGGTGGGAAGACGAC
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