mRNA_P-wetherbeei_contig14659.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14659.1.1
Unique NamemRNA_P-wetherbeei_contig14659.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14659.1.1 vs. uniprot
Match: A0A835YN48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN48_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 3.290e-7
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:  124 PAVGDALVSFNGVSVSGRSYAEVATALRAAGRPLLLRFR 240
            P +GDAL+S+NGVSV+G ++A+VA ALR AGRPL LRFR
Sbjct:  902 PRIGDALLSYNGVSVAGMAFADVAAALRQAGRPLRLRFR 940
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14659.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YN48_9STRA3.290e-769.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14659contigP-wetherbeei_contig14659:629..868 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size240
Hectar predicted targeting categoryother localisation
Exons1
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.173845-CDS-P-wetherbeei_contig14659:628..8681683186029.173845-CDS-P-wetherbeei_contig14659:628..868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14659 629..868 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14659.1.1prot_P-wetherbeei_contig14659.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14659 629..868 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14659.1.1

>prot_P-wetherbeei_contig14659.1.1 ID=prot_P-wetherbeei_contig14659.1.1|Name=mRNA_P-wetherbeei_contig14659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=80bp
STVEYELIFHEPRIGLHFQMTGAGRLVVKGRQGLADPIATLPAVGDALVS
FNGVSVSGRSYAEVATALRAAGRPLLLRFR
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mRNA from alignment at P-wetherbeei_contig14659:629..868+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14659.1.1 ID=mRNA_P-wetherbeei_contig14659.1.1|Name=mRNA_P-wetherbeei_contig14659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig14659:629..868+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACGGTCGAATACGAACTGATATTCCACGAGCCGCGCATCGGGCTGCA
CTTCCAGATGACCGGCGCGGGACGCTTGGTGGTGAAGGGGCGGCAGGGCC
TCGCCGACCCTATCGCGACGCTGCCGGCGGTCGGCGACGCCCTTGTGTCC
TTCAACGGTGTCTCGGTCTCTGGACGGTCGTACGCCGAGGTCGCCACGGC
GCTGCGGGCGGCAGGACGGCCGCTCTTGCTGCGCTTCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14659:629..868+

>mRNA_P-wetherbeei_contig14659.1.1 ID=mRNA_P-wetherbeei_contig14659.1.1|Name=mRNA_P-wetherbeei_contig14659.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=240bp|location=Sequence derived from alignment at P-wetherbeei_contig14659:629..868+ (Phaeothamnion wetherbeei SAG_119_79)
AGCACGGTCGAATACGAACTGATATTCCACGAGCCGCGCATCGGGCTGCA
CTTCCAGATGACCGGCGCGGGACGCTTGGTGGTGAAGGGGCGGCAGGGCC
TCGCCGACCCTATCGCGACGCTGCCGGCGGTCGGCGACGCCCTTGTGTCC
TTCAACGGTGTCTCGGTCTCTGGACGGTCGTACGCCGAGGTCGCCACGGC
GCTGCGGGCGGCAGGACGGCCGCTCTTGCTGCGCTTCCGG
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