mRNA_P-wetherbeei_contig14653.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14653.2.1
Unique NamemRNA_P-wetherbeei_contig14653.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A1F2ZU16_9PROT (Cupin n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1F2ZU16_9PROT)

HSP 1 Score: 265 bits (677), Expect = 1.290e-89
Identity = 127/133 (95.49%), Postives = 129/133 (96.99%), Query Frame = 1
Query:   16 MRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPAK 414
            MRAASRPT KAEAANFVGAVLSDPVY+PEGPSRLRASRVTFMPGGRTNWHQHAVGQ+LYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAP TMMCHLAMSETDDQGRATSW EPVSDADY KAPAK
Sbjct:    1 MRAASRPTTKAEAANFVGAVLSDPVYSPEGPSRLRASRVTFMPGGRTNWHQHAVGQILYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPGTMMCHLAMSETDDQGRATSWFEPVSDADYTKAPAK 133          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A1H8NQZ8_9PROT (Cupin domain protein n=4 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1H8NQZ8_9PROT)

HSP 1 Score: 253 bits (645), Expect = 1.230e-84
Identity = 121/137 (88.32%), Postives = 129/137 (94.16%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPA 411
            M+PRIMRAA+RPTAKAE ANFVG VLSDPV+APEGPSRLRASRV+FMPGGRTNWH+HAVGQVLYVLSGVGRYQLEGEPVQEI  GDTVVIPPNARHWHGSAPDTMM HLAMSET+++G ATSW EPVSDADY KAPA
Sbjct:    1 MKPRIMRAAARPTAKAEPANFVGTVLSDPVFAPEGPSRLRASRVSFMPGGRTNWHKHAVGQVLYVLSGVGRYQLEGEPVQEIRPGDTVVIPPNARHWHGSAPDTMMVHLAMSETNEKGEATSWFEPVSDADYGKAPA 137          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A1T4S9B1_9HYPH (Cupin domain protein n=1 Tax=Enhydrobacter aerosaccus TaxID=225324 RepID=A0A1T4S9B1_9HYPH)

HSP 1 Score: 232 bits (591), Expect = 1.970e-76
Identity = 111/138 (80.43%), Postives = 121/138 (87.68%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPAK 414
            M PRIMRAASRPTAKA A NF G VL D V+APE PSRLRA+RVTF PG RTNWH+HAVGQ+LYVLSGVGRYQLEGEPVQ I+ GDTVVIPPNARHWHG+APDTMM HLAMSET+D+G AT+WLE VSD DY+K PAK
Sbjct:    1 MHPRIMRAASRPTAKAGADNFTGTVLQDQVFAPEQPSRLRATRVTFTPGARTNWHKHAVGQILYVLSGVGRYQLEGEPVQAILPGDTVVIPPNARHWHGAAPDTMMVHLAMSETNDKGEATTWLEAVSDTDYSKVPAK 138          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A7C2QQD3_9HYPH (Cupin domain-containing protein (Fragment) n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QQD3_9HYPH)

HSP 1 Score: 220 bits (560), Expect = 1.010e-71
Identity = 103/139 (74.10%), Postives = 120/139 (86.33%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPAKP 417
            MR RIMRAASRP+ +A AANF G V  + V+APE PSRLRASRVTF PGGRTNWH HAVGQ+LYVLSGVGR+Q+EG PV+ ++ GDTVVIPP A+HWHG+APD MM HLA+SE+DDQGRAT+WLEPVS+ADY +AP KP
Sbjct:    1 MRARIMRAASRPSKQAPAANFGGTVWHEEVFAPEAPSRLRASRVTFTPGGRTNWHTHAVGQILYVLSGVGRFQMEGGPVEVLLPGDTVVIPPGAKHWHGAAPDHMMAHLALSESDDQGRATTWLEPVSEADYTRAPVKP 139          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A2M7GR87_9PROT (Cupin domain-containing protein n=4 Tax=Rhodospirillales TaxID=204441 RepID=A0A2M7GR87_9PROT)

HSP 1 Score: 215 bits (548), Expect = 6.390e-70
Identity = 101/137 (73.72%), Postives = 115/137 (83.94%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPA 411
            M PRI+RA  R T  A A NFVG VL + V+APE PSRLR SRVTF PGGRTNWH HAVGQ+LYVLSG GRYQLEG PV+EI AGDTVVIPP+ARHWHG+APD+MMCHLA+SE+DDQG+A +WLEPVSD D+ + PA
Sbjct:    1 MEPRIIRAGDRQTKVAPADNFVGQVLHESVFAPEAPSRLRVSRVTFTPGGRTNWHTHAVGQILYVLSGSGRYQLEGHPVEEINAGDTVVIPPDARHWHGAAPDSMMCHLALSESDDQGKAATWLEPVSDEDFTQEPA 137          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A2D9EZB3_9PROT (Cupin n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9EZB3_9PROT)

HSP 1 Score: 213 bits (542), Expect = 5.250e-69
Identity = 100/137 (72.99%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPA 411
            M PRI+RA  R T  A A NFVG VL + V+APE PSRLR SRVTF PGGRTNWH HAVGQ+LYVLSG GRYQLEG PV+EI AGDTV+IPP+ARHWHG+APD+MMCHLA+SE+DDQG A  WLEPVSD D+ + PA
Sbjct:    1 MEPRIIRAGDRETKIAPANNFVGQVLHESVFAPENPSRLRVSRVTFTPGGRTNWHTHAVGQILYVLSGSGRYQLEGHPVEEINAGDTVIIPPDARHWHGAAPDSMMCHLALSESDDQGNAAEWLEPVSDDDFTQEPA 137          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A2D7FAA3_9HYPH (Cupin n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FAA3_9HYPH)

HSP 1 Score: 212 bits (539), Expect = 1.610e-68
Identity = 100/138 (72.46%), Postives = 111/138 (80.43%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPAK 414
            M+PRI+RA  RPT    A +FVG VL DPV  PE PSRLRAS+VTF PGGRTNWH HAVGQ+L+VLSGVGRYQ+EGE + EI  GDTVVIPP  +HWHGS+P  MMCHLAMSE+DDQGR T WLEPVSDADY   PAK
Sbjct:    1 MKPRIIRANERPTGLGGADSFVGTVLQDPVIVPEAPSRLRASKVTFTPGGRTNWHTHAVGQILHVLSGVGRYQIEGEALYEIRPGDTVVIPPEVKHWHGSSPGQMMCHLAMSESDDQGRGTEWLEPVSDADYNAEPAK 138          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A537RVY8_9PROT (Cupin domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RVY8_9PROT)

HSP 1 Score: 199 bits (506), Expect = 1.280e-63
Identity = 95/130 (73.08%), Postives = 106/130 (81.54%), Query Frame = 1
Query:   16 MRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKA 405
            MRAA+RPT KA  +NF G V  + V+APE PSRLRASRV+F PGGRTNWH HAVGQVLYVL+GVGRYQ  G PVQ I+ GDTVVIPP  +HWHG+APD  M HLAMSET D+G AT+WLEPVSDADY KA
Sbjct:    1 MRAAARPTKKAPDSNFTGTVWHEEVFAPEAPSRLRASRVSFTPGGRTNWHTHAVGQVLYVLTGVGRYQTLGGPVQVILPGDTVVIPPGVKHWHGAAPDHQMAHLAMSETSDKGEATTWLEPVSDADYNKA 130          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A7X2KCE3_9PROT (Cupin domain-containing protein n=1 Tax=Alphaproteobacteria bacterium HT1-32 TaxID=2665153 RepID=A0A7X2KCE3_9PROT)

HSP 1 Score: 198 bits (503), Expect = 4.590e-63
Identity = 93/137 (67.88%), Postives = 108/137 (78.83%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPA 411
            M PRI+RA    T    A+NF G V+ + V+ PE PSRLR S+VTF+PGGRTNWH HAVGQVLYVLSG+GRYQLEG PV+EI  GDTVVIPPNARHWHG++PD MMCHLAMSE+DDQGR T W E V++  Y + PA
Sbjct:    1 MEPRIIRADKTKTNTGPASNFGGQVMHETVFVPEDPSRLRVSKVTFLPGGRTNWHTHAVGQVLYVLSGIGRYQLEGGPVEEICPGDTVVIPPNARHWHGASPDQMMCHLAMSESDDQGRGTDWQELVAEEIYTEQPA 137          
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Match: A0A2E8TYS6_9PROT (Cupin n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepID=A0A2E8TYS6_9PROT)

HSP 1 Score: 196 bits (498), Expect = 2.480e-62
Identity = 90/135 (66.67%), Postives = 107/135 (79.26%), Query Frame = 1
Query:    1 MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGGRTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGSAPDTMMCHLAMSETDDQGRATSWLEPVSDADYAKA 405
            M P+++RA    T  A + +FVG V  D ++APE PSRLR SRVTF PGGRTNWH HAVGQ+LYVLSGVGRYQLEG P+ EI  GDTVVIPPN+RHWHG++PD MMCHLAMSETD+ G +T W E VSD+DY ++
Sbjct:    1 MEPKVIRANEGKTKIASSTSFVGQVFQDQIFAPEAPSRLRVSRVTFSPGGRTNWHAHAVGQILYVLSGVGRYQLEGGPIYEIHPGDTVVIPPNSRHWHGASPDQMMCHLAMSETDETGASTYWQEAVSDSDYIRS 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14653.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F2ZU16_9PROT1.290e-8995.49Cupin n=2 Tax=Alphaproteobacteria TaxID=28211 RepI... [more]
A0A1H8NQZ8_9PROT1.230e-8488.32Cupin domain protein n=4 Tax=Alphaproteobacteria T... [more]
A0A1T4S9B1_9HYPH1.970e-7680.43Cupin domain protein n=1 Tax=Enhydrobacter aerosac... [more]
A0A7C2QQD3_9HYPH1.010e-7174.10Cupin domain-containing protein (Fragment) n=1 Tax... [more]
A0A2M7GR87_9PROT6.390e-7073.72Cupin domain-containing protein n=4 Tax=Rhodospiri... [more]
A0A2D9EZB3_9PROT5.250e-6972.99Cupin n=1 Tax=Rhodospirillaceae bacterium TaxID=18... [more]
A0A2D7FAA3_9HYPH1.610e-6872.46Cupin n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=... [more]
A0A537RVY8_9PROT1.280e-6373.08Cupin domain-containing protein (Fragment) n=1 Tax... [more]
A0A7X2KCE3_9PROT4.590e-6367.88Cupin domain-containing protein n=1 Tax=Alphaprote... [more]
A0A2E8TYS6_9PROT2.480e-6266.67Cupin n=1 Tax=Magnetovibrio sp. TaxID=2024836 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14653contigP-wetherbeei_contig14653:852..1271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1037409.BJ6T_51190
Preferred nameMA20_13155
PFAMsCupin_2
Model size420
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categorymitochondrion
Exons1
Evalue3.78e-47
EggNOG OGsCOG1917@1|root,COG1917@2|Bacteria,1RH1V@1224|Proteobacteria,2U990@28211|Alphaproteobacteria,3JYQR@41294|Bradyrhizobiaceae
DescriptionAraC-like ligand binding domain
Cds size420
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186029.0278735-CDS-P-wetherbeei_contig14653:851..12711683186029.0278735-CDS-P-wetherbeei_contig14653:851..1271Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14653 852..1271 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14653.2.1prot_P-wetherbeei_contig14653.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14653 852..1271 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14653.2.1

>prot_P-wetherbeei_contig14653.2.1 ID=prot_P-wetherbeei_contig14653.2.1|Name=mRNA_P-wetherbeei_contig14653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=140bp
MRPRIMRAASRPTAKAEAANFVGAVLSDPVYAPEGPSRLRASRVTFMPGG
RTNWHQHAVGQVLYVLSGVGRYQLEGEPVQEIMAGDTVVIPPNARHWHGS
APDTMMCHLAMSETDDQGRATSWLEPVSDADYAKAPAKP*
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mRNA from alignment at P-wetherbeei_contig14653:852..1271+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14653.2.1 ID=mRNA_P-wetherbeei_contig14653.2.1|Name=mRNA_P-wetherbeei_contig14653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig14653:852..1271+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCAAGAATCATGCGAGCCGCGTCCCGCCCCACCGCCAAGGCGGA AGCGGCGAACTTCGTCGGCGCCGTCCTGTCCGATCCGGTCTACGCACCCG AGGGCCCCTCGCGGCTGCGCGCCTCGCGTGTGACGTTCATGCCGGGCGGA CGTACCAACTGGCACCAGCATGCGGTCGGCCAGGTCCTCTACGTGCTGTC GGGCGTCGGCCGCTATCAGCTCGAGGGCGAGCCGGTGCAGGAGATCATGG CGGGCGACACGGTGGTCATTCCGCCCAACGCGCGCCACTGGCACGGTTCG GCGCCGGACACGATGATGTGCCACCTCGCCATGTCGGAGACCGACGACCA GGGCCGGGCCACGAGTTGGCTGGAGCCGGTCAGCGACGCCGACTATGCGA AGGCGCCGGCCAAGCCCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14653:852..1271+

>mRNA_P-wetherbeei_contig14653.2.1 ID=mRNA_P-wetherbeei_contig14653.2.1|Name=mRNA_P-wetherbeei_contig14653.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=420bp|location=Sequence derived from alignment at P-wetherbeei_contig14653:852..1271+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCAAGAATCATGCGAGCCGCGTCCCGCCCCACCGCCAAGGCGGA
AGCGGCGAACTTCGTCGGCGCCGTCCTGTCCGATCCGGTCTACGCACCCG
AGGGCCCCTCGCGGCTGCGCGCCTCGCGTGTGACGTTCATGCCGGGCGGA
CGTACCAACTGGCACCAGCATGCGGTCGGCCAGGTCCTCTACGTGCTGTC
GGGCGTCGGCCGCTATCAGCTCGAGGGCGAGCCGGTGCAGGAGATCATGG
CGGGCGACACGGTGGTCATTCCGCCCAACGCGCGCCACTGGCACGGTTCG
GCGCCGGACACGATGATGTGCCACCTCGCCATGTCGGAGACCGACGACCA
GGGCCGGGCCACGAGTTGGCTGGAGCCGGTCAGCGACGCCGACTATGCGA
AGGCGCCGGCCAAGCCCTAA
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