mRNA_P-wetherbeei_contig14646.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14646.1.1
Unique NamemRNA_P-wetherbeei_contig14646.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14646.1.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 1.270e-17
Identity = 56/186 (30.11%), Postives = 73/186 (39.25%), Query Frame = 1 
Query:   10 LGVLAAAMLDGSVKVYLCPSPSKTAAXXXXXXXXXXXXXG------GGFAP-------------------VLDLAPLVVLALAGPSLTCISWHPTDPTQLLCGATDGSVCLWRLPTYGGNGCGGEEPAPLTTPARRYVDMTRDASSAGDCVLRAVEWCPFEPRLFAAAGQQTAAVVWHVDDQFRPI 492
            LG+  A +  GS+ VY+CP P    A             G      G FAP                   VL   P++   L    L C+ W P +P  LL GA+DG+VC+W++   GG   GGE       P R++             V+  V WCP  P LFA  G      VW   D F P+
Sbjct: 1130 LGLPPAGVSGGSLPVYVCPDPDGVTAEAASSLSNTAPGSGASGGTAGAFAPPGSTPAAXXXXXXXXHGAVVLKTKPILQARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKVSALGGEH-GGEGTTGNHPPFRQFSCSAIGMCDVVQAVVNDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPL 1314
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BLAST of mRNA_P-wetherbeei_contig14646.1.1 vs. uniprot
Match: W7TZJ1_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZJ1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.950e-11
Identity = 61/171 (35.67%), Postives = 79/171 (46.20%), Query Frame = 1 
Query:    1 EQLLGVLAAAMLDGSVKVYLCPSPSKTAAXXXXXXXXXXXXXGGGFAPVLDLAPLVVLALAGPSLTCISWHPTDPTQLLCGATDGSVCLWRLPT------YGGNGCGGEEPAPLTTPARRYVDMTRDASSAGDCVLRAVEWCPFEPRLFAAAGQQTAAVVWHVDDQFRPIV 495
            E ++G L A   DGS +VY+ P P +   XXXXXXXX          PV +L P       G  LT +   P DP+QLLCGAT+G   L+RL        +         P     PARR+ D  R+A       + AV W P  P LF   G   +  +W +   FRP+V
Sbjct:  156 EDVMGSLVAVFGDGSARVYVLPLPPRLXXXXXXXXXXIP------LQPVQELLPP-----RGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA-REAPLPSLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKPFRPVV 314
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14646.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDG0_ECTSI1.270e-1730.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TZJ1_9STRA3.950e-1135.67Uncharacterized protein (Fragment) n=2 Tax=Monodop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14646contigP-wetherbeei_contig14646:210..809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog653948.CCA17576
Preferred nameGTF3C2
PFAMsWD40
Model size495
Max annot lvl2759|Eukaryota
KEGG koko:K15200,ko:K15205
Hectar predicted targeting categoryother localisation
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006351,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Exons2
Evalue4.52e-09
EggNOG OGs293D8@1|root,2RAA6@2759|Eukaryota
Descriptiontranscription by RNA polymerase III
Cds size465
COG categoryS
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.666815-CDS-P-wetherbeei_contig14646:209..4231683186028.666815-CDS-P-wetherbeei_contig14646:209..423Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14646 210..423 -
1683186028.6776602-CDS-P-wetherbeei_contig14646:528..7791683186028.6776602-CDS-P-wetherbeei_contig14646:528..779Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14646 529..779 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186028.6868217-UTR-P-wetherbeei_contig14646:779..8091683186028.6868217-UTR-P-wetherbeei_contig14646:779..809Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14646 780..809 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14646.1.1prot_P-wetherbeei_contig14646.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14646 210..779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14646.1.1

>prot_P-wetherbeei_contig14646.1.1 ID=prot_P-wetherbeei_contig14646.1.1|Name=mRNA_P-wetherbeei_contig14646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=155bp
MLDGSVKVYLCPSPSKTAAASSAAAAGAAAVSGGGFAPVLDLAPLVVLAL
AGPSLTCISWHPTDPTQLLCGATDGSVCLWRLPTYGGNGCGGEEPAPLTT
PARRYVDMTRDASSAGDCVLRAVEWCPFEPRLFAAAGQQTAAVVWHVDDQ
FRPIV
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mRNA from alignment at P-wetherbeei_contig14646:210..809-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14646.1.1 ID=mRNA_P-wetherbeei_contig14646.1.1|Name=mRNA_P-wetherbeei_contig14646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig14646:210..809- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAGCTTTTGGGTGTGCTGGCGGCGGCGATGCTCGACGGCAGTGTCAA
GGTGTACCTGTGCCCGTCCCCGTCTAAGACCGCGGCAGCTTCGAGCGCAG
CGGCGGCCGGCGCAGCCGCGGTCTCAGGCGGCGGTTTTGCGCCGGTGCTG
GACCTGGCACCGCTGGTGGTCCTTGCGCTCGCGGGGCCCAGCCTGACATG
CATCTCGTGGCACCCGACCGACCCGACGCAGTTGCTGTGCGGTGCCACCG
ACGGCTCCGTCTGCCTGTGGCGCCTGCCGACGTCCGCCGAAGCCGCCGCT
TCCAACGGCGGCGCCGGCGGCGGCGGCGGCGGGAGCAGCGTCAGCAGTGG
CGGCAGTGGTAGCTGTCATGGCTGTGGCGGCAACAGTTACGGCGGCAACG
GTTGCGGCGGGGAGGAGCCGGCGCCGTTGACGACGCCGGCGCGGCGATAC
GTGGACATGACGCGGGACGCGTCGTCCGCGGGGGACTGCGTGCTGCGGGC
AGTCGAGTGGTGCCCTTTCGAGCCGCGCCTCTTCGCCGCAGCCGGCCAGC
AGACTGCCGCCGTCGTCTGGCACGTAGACGACCAGTTCCGGCCAATCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14646:210..809-

>mRNA_P-wetherbeei_contig14646.1.1 ID=mRNA_P-wetherbeei_contig14646.1.1|Name=mRNA_P-wetherbeei_contig14646.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=465bp|location=Sequence derived from alignment at P-wetherbeei_contig14646:210..809- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCGACGGCAGTGTCAAGGTGTACCTGTGCCCGTCCCCGTCTAAGAC
CGCGGCAGCTTCGAGCGCAGCGGCGGCCGGCGCAGCCGCGGTCTCAGGCG
GCGGTTTTGCGCCGGTGCTGGACCTGGCACCGCTGGTGGTCCTTGCGCTC
GCGGGGCCCAGCCTGACATGCATCTCGTGGCACCCGACCGACCCGACGCA
GTTGCTGTGCGGTGCCACCGACGGCTCCGTCTGCCTGTGGCGCCTGCCGA
CTTACGGCGGCAACGGTTGCGGCGGGGAGGAGCCGGCGCCGTTGACGACG
CCGGCGCGGCGATACGTGGACATGACGCGGGACGCGTCGTCCGCGGGGGA
CTGCGTGCTGCGGGCAGTCGAGTGGTGCCCTTTCGAGCCGCGCCTCTTCG
CCGCAGCCGGCCAGCAGACTGCCGCCGTCGTCTGGCACGTAGACGACCAG
TTCCGGCCAATCGTG
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