mRNA_P-wetherbeei_contig1462.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE) HSP 1 Score: 367 bits (941), Expect = 1.260e-110 Identity = 217/404 (53.71%), Postives = 284/404 (70.30%), Query Frame = 1
Query: 1 HRIKTSRGWLHECYTPLVAACAAGHAGLTRHLLEWEVLDVNLPNLLGQTALMYAAARGFEAIVLALLAADCDRGAQ--DAAGRTALRWAESSEHRTVTAILRVDPKQSTMPEAAAAGAVEDVWALMRQGVSPDEARVVDMDALFRTQAAGPMGLEDMTRRANVYRSSFEPAELPLTPLAAAAIFGRAAVGLGMPAAVSSASRGGGGGSVAVDARDPLGRTALMHAARFGSEDIVLRLLAAGASRNKKDKE---RKTASELAIAAGHLGIAGIISADPERVDMMDVAAEGKLVLVDGLIKQGVPVDYCHPDGRHPYGTPLIAAAANARPDVVQLILQQPGIAVDRANARGETALMAACNAGALGVARQLLVAGADRERRDKKGLSAEHHAYNGKGHLNMVMAKAL 1197
HRI+T RGW HE YTPL+AAC+ GHAG+ + LL + +LPNLLGQT LMYAA G E +VL LL A G + D+ GRTALR+AESS H V ILRVDP ST+ E++AAG V +VWALMRQG+S +E R+ M LF + L D+ RAN YRS+ EP E LTPLAAAAIF R V + A ++ S V VD RD LGRT LMHAARFGSE VLRL++ GA+R+K+DK RKTAS+LAIAAGHL IAGIISADP+++D+M++A+EG+LVL++GL+KQ V ++Y P +PY TPLIAA+AN R + V++ILQ PG+ V+RAN++GETALM +G++ + R L+ GA+ RD++ +AEH AY +GH++M++ K +
Sbjct: 1713 HRIRTYRGWHHERYTPLIAACSQGHAGMVKRLLSAGAI-AHLPNLLGQTPLMYAAGFGTEEVVLMLLEALKPEGRRSVDSQGRTALRFAESSGHDEVACILRVDPSVSTIQESSAAGRVHEVWALMRQGISGNECRITSMKRLFESPRVAD--LPDIMARANKYRSALEPEEYALTPLAAAAIFSRNRV---IEALLADPS-------VKVDVRDALGRTPLMHAARFGSEGCVLRLISHGAARHKRDKAIVGRKTASDLAIAAGHLHIAGIISADPKKMDLMEIASEGRLVLLNGLVKQDVSLNYVDPS--NPYLTPLIAASANGRDECVRIILQCPGVQVNRANSKGETALMHGAASGSVKIVRMLMKHGANPSARDRRNRTAEHWAYK-QGHMHMILVKVV 2100
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Match: A0A835YQM7_9STRA (VPS9 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQM7_9STRA) HSP 1 Score: 315 bits (806), Expect = 1.600e-92 Identity = 207/439 (47.15%), Postives = 262/439 (59.68%), Query Frame = 1
Query: 1 HRIKTSRGWLHECYTPLVAACAAGHAGLTRHLLEWEVLDVNLPNLLGQ------------------------TALMYAAARGFEAIVLALLAADCDRGAQDAAGRTALRWAESSEHRTVTAILRVDPKQSTMPEAAAAGAVEDVWALMRQGVSPDEARVV----------DMDALFRTQAAGPMGLEDMTRRANVYRSSFEPAELPLTPLAAAAIFGRAAVGLGMPAAVSSASRGGGGGSVAVDARDPLGRTALMHAARFGSEDIVLRLLAAGASRNKKDKERKTASELAIAAGHLGIAGIISADPERVDMMDVAAEGKLVLVDGLIKQGV------PVDYCHPDGRHPYGTPLIAAAANARPDVVQLILQQPGIAVDRANARGETALMAACNAGALGVARQLLVAGADRERRDKKGLSAEHHAYNGKGHLNMVMAKAL 1197
HR + GW HE Y+PL+AAC+A + + LL ++VN+PNLLGQ T LMYAAA G E ++L LL A R QD G TA W S H + +ILRVDP + + AAAAGA++DVWAL+RQGV+ DEAR + DM LF + + D+ +AN+++ SFEP LTPLAAAAIFGR AV G+ G + VD RD + RT LM AAR+G+E VL LL GA R K+D R+TA++LAI G L IAGII+ADPERV +++VAAEGKLVL GL+KQG V C + PYGTPLIAA AN +V L+L+Q G+ V++ N RGETALM A AGALG+ R+L+ AGA ++ D KGLSAEHHAY H+NMV+ K L
Sbjct: 2788 HRRRDHFGWHHELYSPLIAACSAANLHMVSWLLGHVGIEVNMPNLLGQHVXXXXXXXXXXXXXXXXXXXXXXTPLMYAAAGGNEDVLLRLLKAGAARNLQDGTGHTASWWCTVSGHSPLASILRVDPAKRHIQVAAAAGAMDDVWALIRQGVAADEARPIGFXXXXXXXTDMLKLFESPET--RNVPDIAGKANLFKRSFEPPVCTLTPLAAAAIFGRNAVVTGL--------LGSDDYHLDVDTRDHMRRTPLMLAARYGNESTVLTLLHEGAHRYKRDARRRTATDLAIQVGQLQIAGIINADPERVPLVEVAAEGKLVLALGLLKQGNMEAGGGDVQLCS-NRECPYGTPLIAACANGHERMVSLLLKQDGVDVNQRNRRGETALMRAAQAGALGICRKLIQAGAQKDLLDHKGLSAEHHAYKCS-HVNMVLYKGL 3214
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI) HSP 1 Score: 268 bits (685), Expect = 2.200e-76 Identity = 162/288 (56.25%), Postives = 200/288 (69.44%), Query Frame = 1
Query: 1 HRIKTSRGWLHECYTPLVAACAAGHAGLTRHLLEWEVLDVNLPNLLGQTALMYAAARGFEAIVLALLAA--DCDRGAQDAAGRTALRWAESSEHRTVTAILRVDPKQSTMPEAAAAGAVEDVWALMRQGVSPDEARVVDMDALFRTQAAGPMGLEDMTRRANVYRSSFEPAELPLTPLAAAAIFGRAAVGLGMPAAVSSASRGGGGGSVAVDARDPLGRTALMHAARFGSEDIVLRLLAAGASRNKKDKE---RKTASELAIAAGHLGIAGIISADPERVDMMDVAAE 849
HRI+T RGW HE YTPL+AAC+ GHAG+ + LL + +LPNLLGQT LMYAA G E +VL LL A R + D+ GRTALR+AESS H V ILRVDP ST+ E+AAAG V +VWALMRQG+S +E R+ M LF + L D+ RAN YRS+ EP E LTPLAAAAIF R V + A ++ S V VD RD LGRT LMHAARFGSE VLRL++ GA+R+K+DK RKTAS+LAIAAGHL IAGI+SADP+++D+M++A++
Sbjct: 1910 HRIRTYRGWHHERYTPLIAACSQGHAGMVKRLLSAGAI-AHLPNLLGQTPLMYAAGFGTEEVVLKLLEALKPGGRRSVDSQGRTALRFAESSGHDEVACILRVDPSVSTIQESAAAGRVHEVWALMRQGISGNECRITSMKRLFESTRVAD--LPDIMARANKYRSALEPEEYALTPLAAAAIFSRNRV---IEALLADPS-------VKVDVRDALGRTPLMHAARFGSEGCVLRLISHGAARHKRDKAIVGRKTASDLAIAAGHLHIAGIVSADPKKMDLMEIASQ 2184
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Match: A0A7S4D7K5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7K5_HETAK) HSP 1 Score: 87.8 bits (216), Expect = 3.480e-16 Identity = 47/86 (54.65%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 1 HRIKTSRGWLHECYTPLVAACAAGHAGLTRHLLEWEVLDVNLPNLLGQTALMYAAARGFEAIVLALLAADCDRGAQDAAGRTALRW 258
HRI+ S+GW HE YTPL+AACAAGHA L R LL +D +L N LGQT LMY+AA G E +VL LL R D + AL W
Sbjct: 151 HRIRDSQGWHHEQYTPLIAACAAGHADLARRLLTLPGVDADLANRLGQTPLMYSAAVGSEELVLMLLKFGAKRNLVDIHKKRALDW 236
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Match: A0A7R9UAK6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAK6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 5.310e-5 Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 934 TPLIAAAANARPDVVQLILQQPGIAVDRANARGETALMAACNAGALGVARQLLVAGADRERRDKKGLSAEHHA 1152
TPLI AA+ + + VQ +L++ G+ VD N G+T LM A +GAL V LL AGADR R+D G +A+ A
Sbjct: 1390 TPLITAASCRQTEAVQRLLEEKGVEVDITNVLGQTPLMYAAGSGALSVVLILLRAGADRNRKDTDGRTAQDWA 1462 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1462.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1462.3.1 >prot_P-wetherbeei_contig1462.3.1 ID=prot_P-wetherbeei_contig1462.3.1|Name=mRNA_P-wetherbeei_contig1462.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=403bp HRIKTSRGWLHECYTPLVAACAAGHAGLTRHLLEWEVLDVNLPNLLGQTAback to top mRNA from alignment at P-wetherbeei_contig1462:2703..5551- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1462.3.1 ID=mRNA_P-wetherbeei_contig1462.3.1|Name=mRNA_P-wetherbeei_contig1462.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2849bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:2703..5551- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1462:2703..5551- >mRNA_P-wetherbeei_contig1462.3.1 ID=mRNA_P-wetherbeei_contig1462.3.1|Name=mRNA_P-wetherbeei_contig1462.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1209bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:2703..5551- (Phaeothamnion wetherbeei SAG_119_79)back to top |