mRNA_P-wetherbeei_contig1462.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1462.2.1
Unique NamemRNA_P-wetherbeei_contig1462.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1462.2.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-9
Identity = 26/39 (66.67%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 GRHEKFFTEVTDFRCPECGAPREKFFDINDPYDPRNAAR 117
            GRHE FF EV DF+CPEC APR  FFD ND  DP N  R
Sbjct:  261 GRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKR 299
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BLAST of mRNA_P-wetherbeei_contig1462.2.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 3.530e-7
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    4 RHEKFFTEVTDFRCPECGAPREKFFDINDPYDPRNAARNAE 126
            RH+KFF +V D+ CPECGA + +F DI+D  DPRN  R  E
Sbjct:   69 RHKKFFEDVKDYTCPECGAAKSEFVDIHDLTDPRNIDRPRE 109
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1462.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMS9_ECTSI1.320e-966.67Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA3.530e-756.10Rubredoxin-like domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1462contigP-wetherbeei_contig1462:1800..1937 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FMS9
Model size138
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.16e-10
EggNOG OGs2CZ9B@1|root,2S968@2759|Eukaryota
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-21_000280.1
Cds size138
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186027.96351-CDS-P-wetherbeei_contig1462:1799..19371683186027.96351-CDS-P-wetherbeei_contig1462:1799..1937Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1462 1800..1937 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1462.2.1prot_P-wetherbeei_contig1462.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1462 1800..1937 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1462.2.1

>prot_P-wetherbeei_contig1462.2.1 ID=prot_P-wetherbeei_contig1462.2.1|Name=mRNA_P-wetherbeei_contig1462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
GRHEKFFTEVTDFRCPECGAPREKFFDINDPYDPRNAARNAEAAGE
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mRNA from alignment at P-wetherbeei_contig1462:1800..1937+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1462.2.1 ID=mRNA_P-wetherbeei_contig1462.2.1|Name=mRNA_P-wetherbeei_contig1462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:1800..1937+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGGCACGAGAAGTTCTTTACGGAGGTCACTGACTTCCGCTGCCCGGA
GTGCGGCGCGCCGCGGGAAAAGTTCTTCGACATCAACGACCCCTATGATC
CGCGCAACGCCGCCCGCAACGCCGAGGCGGCTGGCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1462:1800..1937+

>mRNA_P-wetherbeei_contig1462.2.1 ID=mRNA_P-wetherbeei_contig1462.2.1|Name=mRNA_P-wetherbeei_contig1462.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig1462:1800..1937+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAGGCACGAGAAGTTCTTTACGGAGGTCACTGACTTCCGCTGCCCGGA
GTGCGGCGCGCCGCGGGAAAAGTTCTTCGACATCAACGACCCCTATGATC
CGCGCAACGCCGCCCGCAACGCCGAGGCGGCTGGCGAG
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