mRNA_P-wetherbeei_contig14616.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14616.1.1
Unique NamemRNA_P-wetherbeei_contig14616.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: D7FIG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIG0_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 1.980e-40
Identity = 67/103 (65.05%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRLLDG 312
            +L R+ R+++FG+DC GP GDG +F+GGEWAPGGEY QRLRVKNV  +L KLKY LP TK+FSL YPEV+ LSPGT  EV+V FRP+  +VYDD I F++LDG
Sbjct:   48 VLSRKSRLQVFGIDCTGPFGDGIVFKGGEWAPGGEYVQRLRVKNVSPKLKKLKYRLPTTKYFSLAYPEVITLSPGTMQEVDVVFRPVSSEVYDDVILFKVLDG 150          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A6H5L764_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L764_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.940e-40
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1
Query:   28 RIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRLLDG 312
            ++FG+DC GP GDG +F+GGEWAPGGEY QRLRVKNV ++L KLKY LP TK+FSL YPEV+ LSPGT  EV+V FRP+  +VYDD I F++LDG
Sbjct:   13 QVFGIDCTGPFGDGIVFKGGEWAPGGEYVQRLRVKNVSSKLKKLKYRLPTTKYFSLAYPEVITLSPGTMQEVDVVFRPVSSEVYDDVILFKVLDG 107          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A836C8F2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8F2_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.380e-35
Identity = 59/103 (57.28%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRLLDG 312
            ++ R +RV++FG++C GP GDG +FRGGEW+PGGEY Q+L VKNV T L KLKY LP +++FS+ YPE++VLSPG    V+V FRP+ ++VYD++IFF++ DG
Sbjct:   10 VISRADRVKVFGIECTGPVGDGIVFRGGEWSPGGEYIQKLTVKNVTTELKKLKYRLPTSRYFSMAYPELIVLSPGMEVVVDVVFRPVLEEVYDETIFFKVQDG 112          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A482UVF9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UVF9_9ARCH)

HSP 1 Score: 133 bits (334), Expect = 3.010e-35
Identity = 56/104 (53.85%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    1 VLLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRLLDG 312
            V + R+ER+R FG++C+GP GDG  FR G W PGGEY Q+L ++NV T + KLKY LP T++FS+ YP+ +VLSPG + EV+V FRP+  + YDD+I+ ++LDG
Sbjct:  114 VPMDRDERIRRFGIECIGPAGDGIFFRAGTWRPGGEYIQKLIIRNVSTSVKKLKYKLPSTRYFSMAYPDPIVLSPGLSQEVDVVFRPVEYEPYDDTIYIKMLDG 217          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A7S1U5R9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5R9_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.820e-34
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRLL 306
            +L  EER R FG++CVGP GDG  F+GGEW PGGEY Q+LR++NV T + KLKY LP TK+F +PYPE++VLSPG   EV+V FRP+  + Y D+I+ R++
Sbjct:   11 ILPVEERARRFGIECVGPFGDGITFKGGEWVPGGEYIQKLRIRNVSTAVKKLKYRLPRTKYFGMPYPELVVLSPGMVVEVDVVFRPVLYEAYQDTIYIRMM 111          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A8J2S9Y5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9Y5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.000e-31
Identity = 58/111 (52.25%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    1 VLLGREERVRIFGVDCVGP----------HGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRL 303
            VL+ +EERV  FGV C GP            DG LF GGEW PGGEY Q+L VKNV T++ KLKY LP T++FSL +PE + LSPG + E++V FRP+++++Y+D+I+F+L
Sbjct:    7 VLMDQEERVARFGVLCTGPTRRDANGVVIEQDGILFAGGEWVPGGEYAQKLTVKNVTTKMKKLKYKLPQTRYFSLAFPETIELSPGMSQEIDVIFRPIKEEIYEDTIYFKL 117          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A7R9UBL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBL0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.460e-27
Identity = 53/94 (56.38%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   10 GREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSI 291
            G E   R FG++  GP+G G  FR GEW+PGGE+ Q+LRV+NV + + KLKY LP +K+FS+PYPEV+ LSPG   +VEVTFRP+  + Y DSI
Sbjct:   81 GEEWSGRHFGIEVSGPYGPGIHFRSGEWSPGGEHVQKLRVRNVSSVVKKLKYKLPTSKYFSMPYPEVVTLSPGMLVDVEVTFRPIVYEPYLDSI 174          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A397A6X0_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397A6X0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.110e-26
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSI--FFRLLDG 312
            +L R E+ R FG+DC    GD  LF  G WAPGGE+T++L VKNV  R  KLKY LP TK+FS+ +P ++ LSPGT+  +++ FRP++ + YDD I     ++DG
Sbjct:   39 VLNRVEQQRNFGIDC----GDEILFAAGAWAPGGEHTKKLHVKNVSNRTLKLKYDLPRTKYFSMEFPVLITLSPGTSRVLDIAFRPVQYEEYDDFIRVLVHIIDG 139          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A7R9Y665_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y665_MICPS)

HSP 1 Score: 103 bits (256), Expect = 6.110e-26
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFRL 303
            +  R ERV+++G+DC     +   +RGG W PGGEY + + +KNV T+  KLKY +P TK+F L +PEV+ LSPG +  V+VTFRP++ + Y+D + F++
Sbjct:    3 MTARYERVQVWGIDCP----ERLTWRGGTWEPGGEYVRTIALKNVSTKTLKLKYRMPKTKYFELEFPEVITLSPGMSASVDVTFRPIKTEQYEDFVEFKV 98          
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Match: A0A3R6WDH1_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WDH1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.130e-25
Identity = 51/105 (48.57%), Postives = 71/105 (67.62%), Query Frame = 1
Query:    4 LLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRLCKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSI--FFRLLDG 312
            +L R E+ R FG+DC    GD  LF  G WAPGGE+T++L VKNV  R  KLKY LP TK+FS+ +P ++ LSPGT+  +++ FRP++ + YDD I     ++DG
Sbjct:  116 VLNRVEQQRNFGIDC----GDEILFAAGAWAPGGEHTKKLHVKNVSNRTLKLKYDLPRTKYFSMEFPVLITLSPGTSRVLDIAFRPVQYEEYDDFIRVLVHIIDG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14616.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIG0_ECTSI1.980e-4065.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L764_9PHAE6.940e-4067.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C8F2_9STRA1.380e-3557.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A482UVF9_9ARCH3.010e-3553.85Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1U5R9_9STRA5.820e-3457.43Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A8J2S9Y5_9STRA4.000e-3152.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UBL0_9STRA2.460e-2756.38Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A397A6X0_9STRA2.110e-2648.57Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7R9Y665_MICPS6.110e-2645.00Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A3R6WDH1_9STRA1.130e-2548.57Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14616contigP-wetherbeei_contig14616:228..745 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIG0
Preferred nameCCDC108
PFAMsASH,PapD-like
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.25e-41
EggNOG OGs2CMXN@1|root,2QSJW@2759|Eukaryota
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186027.8219016-CDS-P-wetherbeei_contig14616:227..3571683186027.8219016-CDS-P-wetherbeei_contig14616:227..357Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14616 228..357 -
1683186027.8309586-CDS-P-wetherbeei_contig14616:563..7451683186027.8309586-CDS-P-wetherbeei_contig14616:563..745Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14616 564..745 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14616.1.1prot_P-wetherbeei_contig14616.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14616 228..745 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14616.1.1

>prot_P-wetherbeei_contig14616.1.1 ID=prot_P-wetherbeei_contig14616.1.1|Name=mRNA_P-wetherbeei_contig14616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
VLLGREERVRIFGVDCVGPHGDGALFRGGEWAPGGEYTQRLRVKNVGTRL
CKLKYSLPGTKFFSLPYPEVLVLSPGTTHEVEVTFRPLRDDVYDDSIFFR
LLDG
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mRNA from alignment at P-wetherbeei_contig14616:228..745-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14616.1.1 ID=mRNA_P-wetherbeei_contig14616.1.1|Name=mRNA_P-wetherbeei_contig14616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=518bp|location=Sequence derived from alignment at P-wetherbeei_contig14616:228..745- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTTGGGCCGCGAGGAACGGGTGCGGATCTTCGGAGTGGATTGCGT CGGGCCTCACGGCGACGGCGCGCTGTTTCGAGGAGGAGAATGGGCTCCCG GCGGCGAGTACACGCAACGTCTTCGCGTCAAGAACGTCGGCACGCGCCTT TGCAAGCTCAAATACAGCTTGCCCGGAACGAAGTGAGTTGCGAGGAAAGT TAAGCCTATCGTTTCCTCTCCATTTCATCTTCAGAATGGAGCTCACGCGC AGACCTTGAGCCACCGGTTCAAACGCAGCCGTCCTTAGGAAGATCTGGTT GTGCCGACGTTTCCCTCGATTTTTGTTCTTCACCATCTGAGAAGTCGCCG GCGGCGCCTCTCGCTCGTCCAAATCGAACCGGACCCAGGTTCTTCTCGCT GCCGTACCCGGAGGTGCTGGTGCTGTCGCCGGGCACCACCCACGAGGTGG AGGTCACGTTTCGCCCACTGCGGGACGACGTTTACGACGATTCCATCTTC TTCCGTTTGCTGGACGGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14616:228..745-

>mRNA_P-wetherbeei_contig14616.1.1 ID=mRNA_P-wetherbeei_contig14616.1.1|Name=mRNA_P-wetherbeei_contig14616.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig14616:228..745- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTGTTGGGCCGCGAGGAACGGGTGCGGATCTTCGGAGTGGATTGCGT
CGGGCCTCACGGCGACGGCGCGCTGTTTCGAGGAGGAGAATGGGCTCCCG
GCGGCGAGTACACGCAACGTCTTCGCGTCAAGAACGTCGGCACGCGCCTT
TGCAAGCTCAAATACAGCTTGCCCGGAACGAAGTTCTTCTCGCTGCCGTA
CCCGGAGGTGCTGGTGCTGTCGCCGGGCACCACCCACGAGGTGGAGGTCA
CGTTTCGCCCACTGCGGGACGACGTTTACGACGATTCCATCTTCTTCCGT
TTGCTGGACGGT
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