mRNA_P-wetherbeei_contig14576.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14576.1.1
Unique NamemRNA_P-wetherbeei_contig14576.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A523P3K6_9PROT (D-3-phosphoglycerate dehydrogenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3K6_9PROT)

HSP 1 Score: 150 bits (380), Expect = 9.090e-41
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDR-AIAVLGVSQALAQDALDQLAAIAAVDKVLQVGF 363
            SRDY+++V+++      T+CLEGTLFDERHPRLVRVN+Y +E+ LEGQ+L TRHAD+PGVIGA+GE+LGRAGINI+RMQVGVA      AIAV+G+S  L++  ++ LA I A+DKVLQV F
Sbjct:  407 SRDYLAVVQVSGVTAMGTLCLEGTLFDERHPRLVRVNNYIIESELEGQILMTRHADRPGVIGAIGELLGRAGINITRMQVGVASDDKTSAIAVVGISNELSEATMESLAEIDAIDKVLQVKF 528          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A1Z8VA24_9PROT (ACT domain-containing protein (Fragment) n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A1Z8VA24_9PROT)

HSP 1 Score: 129 bits (323), Expect = 1.880e-35
Identity = 64/119 (53.78%), Postives = 90/119 (75.63%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQV 357
            S +Y+S++RITA     T+ LEGT+FD R  RLVRV+DY++E+ LEG++L T+HAD+PGVIG +G  LG  G+NISRMQVGV+ GS  AIA+L VS  L +  ++ ++ I AV+KV+Q+
Sbjct:   59 STEYISVLRITATGPDQTVYLEGTIFDGRRARLVRVSDYDIESPLEGRLLITKHADEPGVIGMIGATLGEKGVNISRMQVGVSGGSQMAIAILAVSDELEKATMEGISRIPAVEKVMQI 177          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A3D5DFA7_9GAMM (D-3-phosphoglycerate dehydrogenase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DFA7_9GAMM)

HSP 1 Score: 135 bits (339), Expect = 4.880e-35
Identity = 70/122 (57.38%), Postives = 92/122 (75.41%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVA-KGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQVGF 363
            SRDY++++R++      T+ LEGTLFDERHPRLVRVNDY +E+ L G+++ TRH D+PGVIGA+G +LGR GINIS MQVG+A  GS  AIAV  VS  L+   L +L++I A+DK LQ+ F
Sbjct:  375 SRDYLTMLRVSGVTAAGTLVLEGTLFDERHPRLVRVNDYIIESELTGRIVMTRHDDRPGVIGAIGALLGREGINISSMQVGIAGDGSSEAIAVFRVSSELSIGTLQELSSIDAIDKALQIEF 496          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A1G0G3V3_9GAMM (D-3-phosphoglycerate dehydrogenase n=1 Tax=Gammaproteobacteria bacterium RBG_16_51_14 TaxID=1798265 RepID=A0A1G0G3V3_9GAMM)

HSP 1 Score: 130 bits (328), Expect = 2.510e-33
Identity = 65/116 (56.03%), Postives = 86/116 (74.14%), Query Frame = 1
Query:   10 YVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQV 357
            Y+S++ I A+ G  TI + GTLFD+RHPRLV +N Y +E  L+G +L T HADKPGV+GA+G +LG+A INIS MQVG+A  SD AIAVLG+S+ L   ++  + AI A+ KVLQV
Sbjct:  410 YLSMLSIKARQGAETITVAGTLFDDRHPRLVGINHYPLEAPLDGNLLLTHHADKPGVVGAIGNVLGQADINISHMQVGIASDSDEAIAVLGISRLLDDSSMAAIRAIPAIHKVLQV 525          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A6L8EJF1_9GAMM (ACT domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EJF1_9GAMM)

HSP 1 Score: 120 bits (302), Expect = 6.510e-33
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 1
Query:    7 DYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQVGF 363
            DY S V ++  NG+    + GTLF  R+PRL+ +NDYE+E  LEG +L TRH D+PGVI A+  +L    INISRMQ+G+  GSD+AIAV+GVS  L  + +D+L+ I A++KV+QV  
Sbjct:   10 DYHSAVSLSVHNGERETRVVGTLFHRRYPRLISINDYEIEAVLEGNLLVTRHNDQPGVIAAISNLLADERINISRMQLGIVSGSDKAIAVIGVSTPLNDELMDKLSQIEAINKVMQVSL 128          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: X0YBF9_9ZZZZ (ACT domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0YBF9_9ZZZZ)

HSP 1 Score: 123 bits (308), Expect = 7.470e-33
Identity = 61/119 (51.26%), Postives = 85/119 (71.43%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQV 357
            + DYVSL+ +  K  + +  + GTL  ERHPRLVR++DY VE   EG ++FTRH D+PGV+G+LG IL R  INISRMQVGVA+G   AIA++GVS  ++  AL+++ AI  V + +Q+
Sbjct:   87 AHDYVSLIELRGKAAQSSTSVAGTLLGERHPRLVRIDDYHVEAVPEGCLIFTRHEDRPGVVGSLGSILSRENINISRMQVGVAEGRPEAIALIGVSAPISPSALEEVQAIPGVRQAIQI 205          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A661C3V8_9GAMM (D-3-phosphoglycerate dehydrogenase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661C3V8_9GAMM)

HSP 1 Score: 129 bits (323), Expect = 1.270e-32
Identity = 61/121 (50.41%), Postives = 89/121 (73.55%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQVGF 363
            + DY+S+V + AK     I + GTL ++++ RL+++NDY++E  L G +L TRH+D+PGV+GALG +LG  GINIS MQVGV  G D AIA++G+SQ L++ AL ++A I A+DKV+QV  
Sbjct:  406 THDYISMVSVKAKFDNEEIIVSGTLLNDKYARLIQINDYQIEAPLSGNLLITRHSDQPGVVGALGVLLGEEGINISNMQVGVKDGLDEAIAIIGISQLLSETALGKVADIPAIDKVIQVSL 526          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A6I0E7F2_HYPSQ (D-3-phosphoglycerate dehydrogenase n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E7F2_HYPSQ)

HSP 1 Score: 126 bits (317), Expect = 9.300e-32
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQV 357
            +RDYVSLV + AK G+ +  + GTL  E HPRLV ++DY VE   EG ++FTRH D+PGV+GALG ILGR  INISRMQVGVA+G   AIA++GVS  L   AL+++ AI A+ + +Q+
Sbjct:  410 ARDYVSLVELRAKTGEASTSVAGTLLGESHPRLVCIDDYHVEAVPEGCLIFTRHDDRPGVVGALGGILGRENINISRMQVGVAEGRPEAIALVGVSAPLPPKALEEVRAIPAIRQAVQI 528          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A3C0BRI6_9HYPH (D-3-phosphoglycerate dehydrogenase n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A3C0BRI6_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 1.300e-31
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQV 357
            + DY+SLV + AK  +    + GTL  +RHPRLVR++DY VE   EG ++FTRH D+PGV+GALG ILGR  INISRMQVG+A+G   AIA++GVS  L+  AL+++ AI A+ + +Q+
Sbjct:  410 AHDYLSLVELRAKTAETLTSVAGTLLGDRHPRLVRIDDYHVEAVPEGYLIFTRHDDQPGVVGALGSILGRENINISRMQVGIAEGRAEAIALIGVSAPLSPKALEEVQAIPAIRQAVQI 528          
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Match: A0A522VIM2_9GAMM (D-3-phosphoglycerate dehydrogenase n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A522VIM2_9GAMM)

HSP 1 Score: 125 bits (315), Expect = 1.750e-31
Identity = 64/121 (52.89%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQMLFTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALAQDALDQLAAIAAVDKVLQVGF 363
            S +Y+SL+ +TA +    + L GTLFDER PRLVR+N+YE+E  LEG +L  RH D+PGV+GALG ILGRAGINISRMQ+G   G+DRA+A+L +S+ L+ D + ++  I A+ K  Q+  
Sbjct:  408 SPNYLSLIGLTAWSDSEQVSLAGTLFDERLPRLVRINNYEIEAMLEGHILLFRHYDRPGVVGALGSILGRAGINISRMQLGDEPGTDRAVALLQLSRPLSADVMAEIEQIDAITKAGQISL 528          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14576.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A523P3K6_9PROT9.090e-4163.11D-3-phosphoglycerate dehydrogenase n=1 Tax=Proteob... [more]
A0A1Z8VA24_9PROT1.880e-3553.78ACT domain-containing protein (Fragment) n=2 Tax=P... [more]
A0A3D5DFA7_9GAMM4.880e-3557.38D-3-phosphoglycerate dehydrogenase (Fragment) n=1 ... [more]
A0A1G0G3V3_9GAMM2.510e-3356.03D-3-phosphoglycerate dehydrogenase n=1 Tax=Gammapr... [more]
A0A6L8EJF1_9GAMM6.510e-3350.42ACT domain-containing protein n=1 Tax=Gammaproteob... [more]
X0YBF9_9ZZZZ7.470e-3351.26ACT domain-containing protein (Fragment) n=1 Tax=m... [more]
A0A661C3V8_9GAMM1.270e-3250.41D-3-phosphoglycerate dehydrogenase n=2 Tax=Gammapr... [more]
A0A6I0E7F2_HYPSQ9.300e-3255.46D-3-phosphoglycerate dehydrogenase n=1 Tax=Hyphomi... [more]
A0A3C0BRI6_9HYPH1.300e-3152.94D-3-phosphoglycerate dehydrogenase n=1 Tax=Hyphomi... [more]
A0A522VIM2_9GAMM1.750e-3152.89D-3-phosphoglycerate dehydrogenase n=1 Tax=Methylo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14576contigP-wetherbeei_contig14576:1..366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog697282.Mettu_3554
PFAMs2-Hacid_dh,2-Hacid_dh_C,ACT
Model size366
Max annot lvl135618|Methylococcales
KEGG rclassRC00031
KEGG koko:K00058
KEGG ReactionR01513
KEGG Pathwayko00260,ko00680,ko01100,ko01120,ko01130,ko01200,ko01230,map00260,map00680,map01100,map01120,map01130,map01200,map01230
KEGG ModuleM00020
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.64e-28
EggNOG OGsCOG1052@1|root,COG1052@2|Bacteria,1REXX@1224|Proteobacteria,1T2IU@1236|Gammaproteobacteria,1XEBK@135618|Methylococcales
EC1.1.1.399,1.1.1.95
DescriptionD-isomer specific 2-hydroxyacid dehydrogenase, catalytic
Cds size366
COG categoryCH
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.540929-CDS-P-wetherbeei_contig14576:0..3661683186026.540929-CDS-P-wetherbeei_contig14576:0..366Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14576 1..366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14576.1.1prot_P-wetherbeei_contig14576.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14576 1..366 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14576.1.1

>prot_P-wetherbeei_contig14576.1.1 ID=prot_P-wetherbeei_contig14576.1.1|Name=mRNA_P-wetherbeei_contig14576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
SRDYVSLVRITAKNGKHTICLEGTLFDERHPRLVRVNDYEVETALEGQML
FTRHADKPGVIGALGEILGRAGINISRMQVGVAKGSDRAIAVLGVSQALA
QDALDQLAAIAAVDKVLQVGF*
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mRNA from alignment at P-wetherbeei_contig14576:1..366+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14576.1.1 ID=mRNA_P-wetherbeei_contig14576.1.1|Name=mRNA_P-wetherbeei_contig14576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig14576:1..366+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCGCGACTACGTGTCGCTGGTGCGGATCACCGCCAAGAACGGCAAGCA CACCATCTGTCTCGAAGGCACACTGTTTGACGAGCGCCATCCGCGCCTCG TGCGCGTGAATGACTATGAGGTCGAGACCGCGCTGGAGGGGCAGATGTTG TTCACTCGCCATGCCGACAAGCCCGGTGTGATTGGTGCGCTGGGCGAGAT CCTGGGCCGGGCCGGTATCAATATCTCCCGCATGCAGGTCGGCGTTGCCA AGGGCAGCGACCGCGCGATTGCGGTGTTAGGCGTGTCGCAGGCGCTGGCG CAGGACGCACTGGACCAACTGGCTGCTATTGCGGCGGTCGATAAGGTGCT GCAGGTAGGTTTCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14576:1..366+

>mRNA_P-wetherbeei_contig14576.1.1 ID=mRNA_P-wetherbeei_contig14576.1.1|Name=mRNA_P-wetherbeei_contig14576.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig14576:1..366+ (Phaeothamnion wetherbeei SAG_119_79)
TCGCGCGACTACGTGTCGCTGGTGCGGATCACCGCCAAGAACGGCAAGCA
CACCATCTGTCTCGAAGGCACACTGTTTGACGAGCGCCATCCGCGCCTCG
TGCGCGTGAATGACTATGAGGTCGAGACCGCGCTGGAGGGGCAGATGTTG
TTCACTCGCCATGCCGACAAGCCCGGTGTGATTGGTGCGCTGGGCGAGAT
CCTGGGCCGGGCCGGTATCAATATCTCCCGCATGCAGGTCGGCGTTGCCA
AGGGCAGCGACCGCGCGATTGCGGTGTTAGGCGTGTCGCAGGCGCTGGCG
CAGGACGCACTGGACCAACTGGCTGCTATTGCGGCGGTCGATAAGGTGCT
GCAGGTAGGTTTCTGA
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