mRNA_P-wetherbeei_contig14561.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14561.1.1
Unique NamemRNA_P-wetherbeei_contig14561.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A2D7FCG8_9HYPH (Uncharacterized protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7FCG8_9HYPH)

HSP 1 Score: 317 bits (812), Expect = 1.890e-104
Identity = 149/241 (61.83%), Postives = 177/241 (73.44%), Query Frame = 1
Query:  211 LAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFP--VQPYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPA 927
            + GGY G+SHTH + V + NPGRT   V+D  W G+PFKSP+YYG+R  RW Q G  GA++DFTHAKAIS+ ED A F+GT  GK LP   K+GD F+HLEFSHGHNM+TLNGL+RL      ++PYVG G GISLPH+EVG   E  RTYEYQ+AG  GQALAG + RLGR ++F+EYKF+Y+ YD+PLS    G  L  DLWRQF AWW GE PPGGRL T LM+HHGIGGVM    PA
Sbjct:   79 MIGGYGGVSHTHPTEVRVVNPGRTDFTVKDFGWIGRPFKSPVYYGIRIQRWPQLGIAGAMLDFTHAKAISKREDVATFSGTHNGKTLPEKQKIGDFFRHLEFSHGHNMLTLNGLLRLSPLAGGIRPYVGFGGGISLPHSEVGIHTENARTYEYQFAGFVGQALAGFQVRLGRATLFLEYKFTYAPYDIPLSHEPRGWLLVTDLWRQFSAWWNGEKPPGGRLTTTLMSHHGIGGVMFHTKPA 319          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A2W4RS26_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4RS26_9PROT)

HSP 1 Score: 300 bits (769), Expect = 5.390e-98
Identity = 147/241 (61.00%), Postives = 171/241 (70.95%), Query Frame = 1
Query:  217 GGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRL--GFFPVQPYVGAGAGISLPHTEVGYRNEKG-RTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFV-DLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPA 927
            GGY G+S+TH S V I NP  T        W G+PFKSPIYYGLRT  W  G   G ++DFTHAKAI+  +D A F+G L G+PLP   K+GD F HLEFSHGHNM+TLNGL+RL     PV+PY G G G+S PHTEVG R E G RTYEYQ+AG  GQ LAG+E  LGR S+F EYKFSY+ Y VPLS   +G W+FV D+WRQFRAWW+GE PPGG L T L THH IGGV+VR + A
Sbjct:   78 GGYGGVSYTHPSAVRIVNPDLTDFTASGFNWIGRPFKSPIYYGLRTQHWLPGALTGTMIDFTHAKAIAVKDDVATFSGVLNGEPLPPRAKVGDVFTHLEFSHGHNMLTLNGLVRLPWSLLPVRPYFGLGGGLSFPHTEVGLRAETGKRTYEYQFAGFAGQVLAGIEIPLGRASLFFEYKFSYAPYSVPLSHEPNG-WVFVTDVWRQFRAWWMGEEPPGGMLTTTLATHHAIGGVLVRTSSA 317          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A2W4N9R4_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4N9R4_9PROT)

HSP 1 Score: 295 bits (755), Expect = 7.080e-96
Identity = 153/262 (58.40%), Postives = 181/262 (69.08%), Query Frame = 1
Query:  154 ASTPPASGTGAGSSVAAETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRL--GFFPVQPYVGAGAGISLPHTEVGYRNEKG-RTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFV-DLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPA 927
            A+T PA  + A   V  E   GGY G+S+TH STV I NPG T + V D  W G+PFK+PIYYGLRT  W      G +VDFTHAKAI+  ED A  +G L G+P+P   K+G+ F+HLEFSHGHNM+TLNG++R    + PV+PY G GAG S PHTEVG   E+G RTYEYQ+AG  GQ LAG+E  LGRTS+F EYKFSY+ Y VPLS    G W+FV D+WRQFRAWW GE PPGG L T L THH I G+MVR   A
Sbjct:   57 AATEPAQPSEAERGVRREHKFGGYGGVSYTHPSTVRIVNPGVTDLTVSDFNWIGRPFKAPIYYGLRTQHWLPDALTGTMVDFTHAKAIAVKEDVATLSGILNGEPVPPKAKVGEVFRHLEFSHGHNMLTLNGMVRAPASWLPVRPYFGIGAGASFPHTEVGLVAEQGKRTYEYQFAGFAGQVLAGIEIPLGRTSLFFEYKFSYAPYSVPLSHEHYG-WVFVTDVWRQFRAWWNGEKPPGGTLTTTLATHHAISGLMVRTNSA 317          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A7C4TT24_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TT24_9HYPH)

HSP 1 Score: 293 bits (751), Expect = 2.270e-95
Identity = 141/241 (58.51%), Postives = 172/241 (71.37%), Query Frame = 1
Query:  205 ETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFF--PVQPYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVA 921
            E   G Y G+S+TH STV+IENPG+T + V  + W G+PFKSPIYYGLR + W   GR+G +VDF HAKAIS       F G   G+P+P   ++GD F+HLEFSHGHN++TLN L+RLG F   V+PY G G G+++PHTEVG+  EK RTYEYQYAGL  QALAG+E RLGR S+F EYKF+++ Y VPLS    G  L  DLWRQF AW  G +PPGG LRT LMT H + GV+VRVA
Sbjct:   72 EVQVGAYGGVSYTHPSTVSIENPGKTDLRVDGVNWIGRPFKSPIYYGLRILAWGPLGRLGGMVDFIHAKAISVPSQETTFTGMRNGQPVPPRTRVGDVFRHLEFSHGHNLLTLNALVRLGTFLGRVRPYAGVGGGLAIPHTEVGFAGEKERTYEYQYAGLAWQALAGIEVRLGRASIFFEYKFTFAPYAVPLSLTHTGGLLVGDLWRQFEAWLSGRAPPGGTLRTTLMTQHAVSGVLVRVA 312          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: UPI00036540B0 (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00036540B0)

HSP 1 Score: 263 bits (673), Expect = 1.650e-83
Identity = 146/311 (46.95%), Postives = 190/311 (61.09%), Query Frame = 1
Query:    1 ATQQISSRLERYAALGAVVALGIAMASVAAGSDGDLEHAGVVAMVAGAGNGASTPPASGTGAGSSVAAETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFP--VQPYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPA 927
            A Q  + R+E  ++L A+ AL +  A +      D   +   A  AGA +  +  PA G         E +  GY G+ +T+ S V+I+  G     V+++ WEGKPF +PIYYG R +RW   GR+G ++DFTH+K ISRF+  AAF GT++  P P    +   F+ LE SHGHNM+TLNGL RL  F   + PYVG GAG+SLPH+EV   N + RTYEYQ AG  GQAL G+E R  R S F EYKF+ + Y +PLS   DGS LF DLWRQF  W  GE PPGGRL T L++H  +GG+ +R APA
Sbjct:   18 APQMGTRRIEALSSLFAIAALAVVAAPIVMEQSTDGTSSDRAAAPAGAPS--AYAPAGG---------EFMFAGYSGVPYTYPSDVSIKKTGVHDFTVKEVEWEGKPFVNPIYYGARIVRWLGTGRIGTMLDFTHSKTISRFDQEAAFTGTIDSAPAPEKAVIRSVFRKLEASHGHNMLTLNGLFRLPSFTPRIYPYVGLGAGVSLPHSEVQMANSEKRTYEYQMAGAVGQALVGIELRTARVSYFFEYKFTLAPYLMPLSER-DGSLLFYDLWRQFSDWLSGEEPPGGRLTTNLVSHQVVGGLGIRSAPA 316          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A832A8U9_9RHOB (Uncharacterized protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A832A8U9_9RHOB)

HSP 1 Score: 261 bits (666), Expect = 1.510e-82
Identity = 129/243 (53.09%), Postives = 164/243 (67.49%), Query Frame = 1
Query:  199 AAETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFPVQ--PYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVA 921
            A E   G Y G+ +T+ S +  +N  +TSM V+D+AW+GKPFKSPIYYG+R  RW   GR GA++DFTH K  SR E     +G  + KPLP   K+ D F H EF+HGHNM+TLNGL RL     +  PYVGAG G+SLPH+EV ++  + RTYEYQY G   Q L GLEFR+ R S F+EYKF+Y+ Y+VPLS   DGS L +DL+ QFR WW G+ P GG   T L++H  IGG+ VR+A
Sbjct:   66 AGEWFIGAYGGVPYTYNSDMLFKNGDKTSMIVKDIAWDGKPFKSPIYYGIRVSRWGHSGRTGAMLDFTHGKVYSRREQEVELSGKRDSKPLPPKAKIKDIFHHFEFTHGHNMLTLNGLYRLPQLGARLSPYVGAGFGVSLPHSEVQFKGSRVRTYEYQYTGPAFQFLIGLEFRIPRLSYFIEYKFTYAPYEVPLSKR-DGSILPIDLYHQFRRWWSGKQPEGGWAWTTLISHQVIGGMGVRIA 307          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: UPI0009314C47 (hypothetical protein n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009314C47)

HSP 1 Score: 251 bits (642), Expect = 6.700e-79
Identity = 131/255 (51.37%), Postives = 164/255 (64.31%), Query Frame = 1
Query:  181 GAGSSVAA--ETLAGGYLGISHTHASTVTIENPG---RTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFP--VQPYVGAGAGISLPHTEVGYRN-EKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVA 921
            GAGSSVA   ET  G Y G+ +T+ +   I+  G    T   +  + W   PFKSPIYYG R  RW  GG+ G  VDF H+KAI+  +D A F+GTL+G+PLPA  ++ D  K LEFSHGHNM+ L G +RL      + PYVGAG G+ LPHTE  Y N  + RTYEY YAG  GQALAG E RL R SVFVEYKF+Y  Y  PLS   +GSWL +DLWRQ   W+ GE+P GG + T +++H  + G+ VR+A
Sbjct:   61 GAGSSVAVGNETTIGAYTGVPYTYPTAAHIKGAGDNPATDFTIDPVGWYTDPFKSPIYYGARVARWFSGGKTGTGVDFIHSKAIAPLDDEANFSGTLDGQPLPARARIRDVVKKLEFSHGHNMLLLTGFLRLPSIGARISPYVGAGGGVLLPHTEFAYTNGSRPRTYEYNYAGPAGQALAGFEIRLSRLSVFVEYKFTYGHYGAPLSEA-EGSWLPLDLWRQVSRWFAGEAPAGGHISTEVVSHQVVSGLTVRLA 314          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A7Y4XH38_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y4XH38_HYPSQ)

HSP 1 Score: 251 bits (641), Expect = 8.640e-79
Identity = 123/243 (50.62%), Postives = 153/243 (62.96%), Query Frame = 1
Query:  205 ETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFP-VQPYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPAA 930
            E+  G YLG  + + S   ++  GR  + + D+ W   PF +P+YYG R  RW  GGR G +VDFTH+KA +  +    F GTL+GKP PA  K+ + F  LEFSHGHNM+TLNGLMRL  F    PYVG G GISLPH+E+  + +  RTYEYQ  GL GQALAG+EFR    SVF EYKF+ + Y  P++   DG+WL  D+WRQF  WW G  PPGG   T L +H  IGG  VR  P A
Sbjct:   68 ESTFGAYLGAPYHYPSDFHLKKEGRHDLTIEDIEWFTNPFDNPLYYGARLQRWGDGGRFGTMVDFTHSKAYAPMKTDTKFEGTLDGKPAPAIAKVSEFFDKLEFSHGHNMLTLNGLMRLSSFGRFSPYVGLGGGISLPHSEIHLKTDPTRTYEYQMTGLNGQALAGIEFRTATGSVFFEYKFTLADYKSPITHN-DGNWLPFDMWRQFSRWWSGAEPPGGWASTRLTSHQVIGGFYVRFVPEA 309          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: UPI0009315FBA (hypothetical protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI0009315FBA)

HSP 1 Score: 250 bits (639), Expect = 2.290e-78
Identity = 127/244 (52.05%), Postives = 160/244 (65.57%), Query Frame = 1
Query:  205 ETLAGGYLGISHTHASTVTIENPGRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFPV--QPYVGAGAGISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPAA 930
            E +  GY G+ +T+ S VT+  PG       D+AW+GKPF +PIYYG R + +  G  +G ++DFTH+KA++R  +   F GTL+G P P    L D F  LE SHGHNM+TLNGL RL  F V  QPYVG GAG+SLPH+EV       RTYEYQ AG  GQAL G+E R  R S F+EYKF+Y+ Y++PLS   +G+ L +DLW QFR W  G  PPGGRL T  ++H GI G+ VR APAA
Sbjct:   77 ELMFAGYSGVPYTYPSDVTVIKPGVHDFTAHDVAWDGKPFVNPIYYGARIVGFGNGP-LGTMLDFTHSKALARLNEDVTFNGTLDGAPAPERAVLRDIFSKLEASHGHNMLTLNGLFRLPRFSVRLQPYVGLGAGVSLPHSEVRLTKADSRTYEYQVAGFVGQALFGIELRTARMSYFLEYKFTYAPYEMPLSER-EGTLLPIDLWNQFRDWLSGTEPPGGRLTTSYVSHQGIFGLGVRTAPAA 318          
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Match: A0A6I0E8Z6_HYPSQ (Uncharacterized protein n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E8Z6_HYPSQ)

HSP 1 Score: 249 bits (637), Expect = 4.050e-78
Identity = 125/247 (50.61%), Postives = 163/247 (65.99%), Query Frame = 1
Query:  205 ETLAGGYLGISHTHASTVTIENP---GRTSMAVRDLAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAGTLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFP--VQPYVGAGAGISLPHTEVGYRN-EKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFSYSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIGGVMVRVAPA 927
            ET+ G + G  + + S   +ENP   G T   +  + W   PFKSPIYYG R  +W  GG+ GA +DF H+KAI+  E+ A+F+GTL+G+PLP   ++ D    LEFSHGHNM+ LNGL+RL      V PYVGAGAG+ LPHTE    N  + RTYEY YAG  GQAL G+E RL + S+F+EYKF+Y+ Y  PLS V +GSWL VDLWRQ + W  G   PGGR+ T +++H  + G+ VR+APA
Sbjct:   71 ETVIGAFTGAPYNYPSAARVENPNATGATDFTIDPINWYTDPFKSPIYYGARVAQWFAGGKTGAGIDFIHSKAIAPLEEEASFSGTLDGQPLPPRARIKDIVSKLEFSHGHNMLLLNGLLRLPGIGARVSPYVGAGAGVLLPHTEFELANGSRPRTYEYNYAGPAGQALLGVELRLAKLSLFIEYKFTYAHYGAPLSEV-EGSWLPVDLWRQAKRWLSGAPAPGGRISTEIVSHQVVSGLAVRLAPA 316          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14561.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D7FCG8_9HYPH1.890e-10461.83Uncharacterized protein n=2 Tax=Hyphomicrobiaceae ... [more]
A0A2W4RS26_9PROT5.390e-9861.00Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A2W4N9R4_9PROT7.080e-9658.40Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7C4TT24_9HYPH2.270e-9558.51Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI00036540B01.650e-8346.95hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]
A0A832A8U9_9RHOB1.510e-8253.09Uncharacterized protein n=1 Tax=Rhodobacteraceae b... [more]
UPI0009314C476.700e-7951.37hypothetical protein n=1 Tax=Hyphomicrobium sp. ND... [more]
A0A7Y4XH38_HYPSQ8.640e-7950.62Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]
UPI0009315FBA2.290e-7852.05hypothetical protein n=1 Tax=Hyphomicrobium sp. CS... [more]
A0A6I0E8Z6_HYPSQ4.050e-7850.61Uncharacterized protein n=1 Tax=Hyphomicrobium sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14561contigP-wetherbeei_contig14561:309..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911257_gene1074
Preferred namelpxQ
PFAMsOMP_b-brl
Model size936
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K12980
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.7e-84
EggNOG OGsCOG3637@1|root,COG3637@2|Bacteria,1RBBG@1224|Proteobacteria,2U5ED@28211|Alphaproteobacteria
DescriptionLipid A oxidase
Cds size936
COG categoryM
BRITEko00000,ko01005
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186026.1305733-CDS-P-wetherbeei_contig14561:308..12441683186026.1305733-CDS-P-wetherbeei_contig14561:308..1244Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14561 309..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14561.1.1prot_P-wetherbeei_contig14561.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14561 309..1244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14561.1.1

>prot_P-wetherbeei_contig14561.1.1 ID=prot_P-wetherbeei_contig14561.1.1|Name=mRNA_P-wetherbeei_contig14561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=312bp
ATQQISSRLERYAALGAVVALGIAMASVAAGSDGDLEHAGVVAMVAGAGN
GASTPPASGTGAGSSVAAETLAGGYLGISHTHASTVTIENPGRTSMAVRD
LAWEGKPFKSPIYYGLRTIRWAQGGRVGALVDFTHAKAISRFEDTAAFAG
TLEGKPLPATGKLGDTFKHLEFSHGHNMVTLNGLMRLGFFPVQPYVGAGA
GISLPHTEVGYRNEKGRTYEYQYAGLTGQALAGLEFRLGRTSVFVEYKFS
YSSYDVPLSGVVDGSWLFVDLWRQFRAWWVGESPPGGRLRTPLMTHHGIG
GVMVRVAPAAR*
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mRNA from alignment at P-wetherbeei_contig14561:309..1244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14561.1.1 ID=mRNA_P-wetherbeei_contig14561.1.1|Name=mRNA_P-wetherbeei_contig14561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig14561:309..1244+ (Phaeothamnion wetherbeei SAG_119_79)
GCAACACAACAGATTTCGTCGCGGCTCGAGCGCTACGCTGCGCTTGGCGC GGTTGTTGCGCTTGGCATTGCCATGGCCTCCGTAGCAGCTGGCTCAGATG GCGACCTGGAACATGCAGGCGTCGTGGCCATGGTTGCTGGCGCTGGCAAT GGTGCAAGCACGCCGCCCGCATCGGGTACGGGGGCAGGCAGTTCGGTGGC CGCCGAGACGCTGGCCGGCGGATACCTCGGCATCTCGCACACCCACGCGA GCACAGTCACGATCGAGAACCCTGGCCGCACGTCGATGGCCGTGCGCGAT CTCGCCTGGGAAGGCAAGCCGTTCAAGAGCCCGATCTACTACGGTCTGCG CACCATTCGGTGGGCCCAAGGCGGCCGCGTCGGCGCGCTCGTCGATTTCA CGCACGCCAAGGCGATCTCCCGTTTCGAGGATACGGCCGCATTTGCGGGT ACGCTTGAAGGAAAACCCCTGCCCGCGACAGGCAAGCTCGGGGACACGTT CAAACACCTCGAGTTCAGTCATGGCCACAACATGGTGACGTTGAACGGCT TGATGCGGCTGGGGTTCTTTCCGGTCCAGCCTTACGTCGGCGCCGGCGCC GGGATCTCGCTGCCGCATACCGAAGTGGGATATCGCAACGAGAAGGGACG CACCTACGAATACCAGTACGCCGGATTGACCGGTCAGGCGCTTGCGGGCC TGGAATTCAGGCTCGGCAGGACATCGGTGTTCGTCGAGTACAAGTTCTCG TACTCCTCCTACGACGTACCGCTTTCCGGTGTCGTCGACGGCAGTTGGCT GTTCGTCGATCTGTGGCGTCAGTTTCGAGCCTGGTGGGTGGGCGAAAGCC CGCCCGGAGGCCGGCTTCGCACACCGCTCATGACCCATCATGGCATCGGT GGCGTCATGGTTCGCGTCGCACCGGCGGCGCGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14561:309..1244+

>mRNA_P-wetherbeei_contig14561.1.1 ID=mRNA_P-wetherbeei_contig14561.1.1|Name=mRNA_P-wetherbeei_contig14561.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=936bp|location=Sequence derived from alignment at P-wetherbeei_contig14561:309..1244+ (Phaeothamnion wetherbeei SAG_119_79)
GCAACACAACAGATTTCGTCGCGGCTCGAGCGCTACGCTGCGCTTGGCGC
GGTTGTTGCGCTTGGCATTGCCATGGCCTCCGTAGCAGCTGGCTCAGATG
GCGACCTGGAACATGCAGGCGTCGTGGCCATGGTTGCTGGCGCTGGCAAT
GGTGCAAGCACGCCGCCCGCATCGGGTACGGGGGCAGGCAGTTCGGTGGC
CGCCGAGACGCTGGCCGGCGGATACCTCGGCATCTCGCACACCCACGCGA
GCACAGTCACGATCGAGAACCCTGGCCGCACGTCGATGGCCGTGCGCGAT
CTCGCCTGGGAAGGCAAGCCGTTCAAGAGCCCGATCTACTACGGTCTGCG
CACCATTCGGTGGGCCCAAGGCGGCCGCGTCGGCGCGCTCGTCGATTTCA
CGCACGCCAAGGCGATCTCCCGTTTCGAGGATACGGCCGCATTTGCGGGT
ACGCTTGAAGGAAAACCCCTGCCCGCGACAGGCAAGCTCGGGGACACGTT
CAAACACCTCGAGTTCAGTCATGGCCACAACATGGTGACGTTGAACGGCT
TGATGCGGCTGGGGTTCTTTCCGGTCCAGCCTTACGTCGGCGCCGGCGCC
GGGATCTCGCTGCCGCATACCGAAGTGGGATATCGCAACGAGAAGGGACG
CACCTACGAATACCAGTACGCCGGATTGACCGGTCAGGCGCTTGCGGGCC
TGGAATTCAGGCTCGGCAGGACATCGGTGTTCGTCGAGTACAAGTTCTCG
TACTCCTCCTACGACGTACCGCTTTCCGGTGTCGTCGACGGCAGTTGGCT
GTTCGTCGATCTGTGGCGTCAGTTTCGAGCCTGGTGGGTGGGCGAAAGCC
CGCCCGGAGGCCGGCTTCGCACACCGCTCATGACCCATCATGGCATCGGT
GGCGTCATGGTTCGCGTCGCACCGGCGGCGCGCTGA
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