mRNA_P-wetherbeei_contig14559.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14559.2.1
Unique NamemRNA_P-wetherbeei_contig14559.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A3C2AZU2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZU2_9ACTN)

HSP 1 Score: 285 bits (728), Expect = 2.780e-94
Identity = 141/179 (78.77%), Postives = 154/179 (86.03%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEGA-PLRFQWRDVLQRVEDLGDLFAPLLTTKQELP 534
            PMAL+ADL+SPRAVVFDFDPG+PA + ECC+ AL VRDVLAAV + GW KTSGSKGLQLYVPLN+PCTH  A+DFALAVGQLLE Q R+RVTTTMAKAVRPG+IF+DWSQNARHKTTIGVYSMRAR EPT STPVTWDEV ACA G    RF WR+VL RVE  GDLFAP+LTT Q LP
Sbjct:  113 PMALAADLDSPRAVVFDFDPGQPAGMRECCEAALWVRDVLAAVNLQGWAKTSGSKGLQLYVPLNSPCTHEKAADFALAVGQLLEHQHRDRVTTTMAKAVRPGRIFVDWSQNARHKTTIGVYSMRARAEPTCSTPVTWDEVEACAAGGVEPRFTWREVLARVEAHGDLFAPVLTTVQTLP 291
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A7K1B288_9ACTN (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A7K1B288_9ACTN)

HSP 1 Score: 273 bits (699), Expect = 1.040e-89
Identity = 135/181 (74.59%), Postives = 154/181 (85.08%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMAL+ADLESPRAVVFD DPG PAT++ECC+IAL VRDVLAAVG+ G+ KTSGSKGLQLYVPLNTPCTH AASDFALAVGQ+LE++M +RVTT MAK  RPGK+F+DWSQN+RHKTTIGVYSMRAR  P VSTPV+WDEV  CA+G   L F+  DVL+RV DLGDLF P+L  +Q LP P
Sbjct:  125 PMALAADLESPRAVVFDLDPGAPATVVECCRIALEVRDVLAAVGLQGFCKTSGSKGLQLYVPLNTPCTHEAASDFALAVGQVLERRMPDRVTTVMAKVERPGKVFVDWSQNSRHKTTIGVYSMRARVRPWVSTPVSWDEVERCADGDLRLVFETADVLERVADLGDLFDPVLQMQQVLPTP 305
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A6N7FXS3_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FXS3_9ACTN)

HSP 1 Score: 249 bits (637), Expect = 2.460e-80
Identity = 120/181 (66.30%), Postives = 146/181 (80.66%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMA + D+ESP  VVFD DPGEPATI+ECC +AL +R +L A+G++ WPKTSGSKGLQLY+PLN+P TH  AS FALAV QLLE+++  +V +TM +A RPGK+F+DWSQN+RHKTTI  YS+RAR  PTVSTP+ WDEVAA AEG A LRF+   VL+R+E LGDLFAP LT +QELP P
Sbjct:  121 PMARAGDIESPTMVVFDLDPGEPATILECCAVALEIRTLLEALGLEAWPKTSGSKGLQLYLPLNSPATHDEASSFALAVAQLLERRLPGQVISTMERAARPGKVFVDWSQNSRHKTTIAPYSLRARPRPTVSTPLDWDEVAAGAEGDAELRFEAGQVLERLERLGDLFAPTLTLRQELPLP 301
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A4R7HY14_9ACTN (Bifunctional non-homologous end joining protein LigD n=1 Tax=Ilumatobacter fluminis TaxID=467091 RepID=A0A4R7HY14_9ACTN)

HSP 1 Score: 248 bits (634), Expect = 5.990e-80
Identity = 123/182 (67.58%), Postives = 147/182 (80.77%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTP-CTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMA + DL+ PRA+VFDFDPG PA I ECC ++L VR+VL +VG+ GW KTSGSKGLQ+YVPLNTP  TH AA+DFALAVGQ++E+++  +VTT MAKA RPGKIF+DWSQNA HKTTI  YS+RAR EPTVSTPVTWDEV +CA+G   LRF    VL+RV+  GDLF P+LT +QELP P
Sbjct:  117 PMACADDLDVPRALVFDFDPGAPAAIAECCTVSLGVREVLDSVGLQGWCKTSGSKGLQMYVPLNTPSATHEAAADFALAVGQVMERRLPKQVTTIMAKAERPGKIFVDWSQNAFHKTTIAPYSLRARPEPTVSTPVTWDEVESCADGDIELRFTSDQVLERVDAHGDLFEPVLTVEQELPTP 298
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A2E0RUN8_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0RUN8_9ACTN)

HSP 1 Score: 248 bits (632), Expect = 1.200e-79
Identity = 126/182 (69.23%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTP-CTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMA + DL+ PRA+VFDFDPG PA I ECC +AL VRDVLA++ + GW KTSGSKGLQ+YVPLNT   TH  A+DFALAVGQ++E+Q   +VTT MAK+ RPGKIFIDWSQNA HKTTI  YS+RAR EPTVSTPVTWDEV ACA+G A LRF    VLQRVED GDLFA +LT +  LP P
Sbjct:  117 PMACADDLDVPRALVFDFDPGAPAAIEECCSVALGVRDVLASIDVQGWCKTSGSKGLQMYVPLNTDDATHDGAADFALAVGQVMERQRPEQVTTVMAKSERPGKIFIDWSQNAFHKTTIAPYSLRARPEPTVSTPVTWDEVQACADGDAELRFTSDQVLQRVEDHGDLFADVLTVEHALPTP 298
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A3M2H7G7_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2H7G7_ACTSX)

HSP 1 Score: 244 bits (623), Expect = 3.570e-78
Identity = 119/178 (66.85%), Postives = 140/178 (78.65%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEGAPLRFQWRDVLQRVEDLGDLFAPLLTTKQELP 534
            PMA  AD+ESP  VVFD DPG PATI+ECC +AL +RDVLAAVG+    KTSGSKGLQ+YVPLN P TH   +DFALAV +LLE++  +RV T M KAVR G++FIDWSQNARHKTT+ VYS+R R  PTVSTPVTWDEVAA A+G PL F+  +VL RVE  GDLFAP +T +Q+LP
Sbjct:  122 PMARCADIESPTMVVFDLDPGPPATIVECCAVALEIRDVLAAVGLSAVAKTSGSKGLQVYVPLNRPHTHRHCADFALAVARLLERRHPDRVVTVMKKAVRSGRVFIDWSQNARHKTTVAVYSLRGRDRPTVSTPVTWDEVAAGADGEPLVFEANEVLDRVERQGDLFAPAVTVEQDLP 299
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A6C7E0P4_ILUCY (Uncharacterized protein n=1 Tax=Ilumatobacter coccineus (strain NBRC 103263 / KCTC 29153 / YM16-304) TaxID=1313172 RepID=A0A6C7E0P4_ILUCY)

HSP 1 Score: 244 bits (622), Expect = 3.820e-78
Identity = 119/182 (65.38%), Postives = 144/182 (79.12%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTP-CTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMA + D+++P  +VFDFDPG   +++ECCQIALA   VL +VG+ GW KTSGSKGLQ+YVPLNTP  TH  A+DFALAVGQ+LE+Q+  +VTT MAK VRPGKIF+DWSQNA HKTTI  YS+RAR  PTVSTPVTWDEV +CA G   L F+  DVL+RV++ GDLF P+LT +QELP P
Sbjct:  115 PMAHAVDIDTPSTLVFDFDPGPKTSVVECCQIALATTAVLESVGLQGWCKTSGSKGLQMYVPLNTPGATHQGAADFALAVGQVLERQLPGKVTTIMAKDVRPGKIFVDWSQNALHKTTIAPYSLRARPRPTVSTPVTWDEVESCASGDLDLVFEAGDVLERVDEFGDLFEPVLTLQQELPTP 296
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A7Y1ZVZ9_9ACTN (Uncharacterized protein n=1 Tax=Ilumatobacter sp. TaxID=1967498 RepID=A0A7Y1ZVZ9_9ACTN)

HSP 1 Score: 242 bits (618), Expect = 1.980e-77
Identity = 122/186 (65.59%), Postives = 146/186 (78.49%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTP-CTHAAASDFALAVGQLLEQQMRNR----VTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEGA-PLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKP 540
            PMAL+ADLE+PR +VFDFDPG   +++ECCQ+ALA R VLA+V + GW KTSGSKGLQ+YVPLNTP  TH  A++FALAVGQ+LE+QM       VTT MAK+ RPGK+F+DWSQNA HKTTI  YS+RAR EPTVSTPVTWDEV  CA+G   LRF+  DVL RV + GD+F P+LT +Q LP P
Sbjct:  118 PMALAADLETPRTLVFDFDPGPRTSVVECCQVALAARGVLASVELQGWCKTSGSKGLQMYVPLNTPGATHDGAANFALAVGQVLERQMSAGSGVGVTTVMAKSERPGKVFVDWSQNAHHKTTIAPYSLRARPEPTVSTPVTWDEVGDCADGRIDLRFEAADVLARVAEHGDVFEPVLTLEQHLPGP 303
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: UPI00034DD286 (non-homologous end-joining DNA ligase n=1 Tax=Ilumatobacter nonamiensis TaxID=467093 RepID=UPI00034DD286)

HSP 1 Score: 242 bits (617), Expect = 2.400e-77
Identity = 121/184 (65.76%), Postives = 144/184 (78.26%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTP-CTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEG-APLRFQWRDVLQRVEDLGDLFAPLLTTKQELPKPAT 546
            PMAL+ DL++PR +VFDFDPG   +I+ECC++ALA + VL AV + GW KTSGSKGLQ+YVPLNT   TH  A+DFALAVGQ+LE+Q+   VTT MAK  RPGKIF+DWSQNA HKTTI  YS+RAR  PTVSTPVTWDEV  CA+G A L F+  DVL RV++ GDLFA +LT +QELP P T
Sbjct:  118 PMALAEDLDTPRTLVFDFDPGPKTSIVECCRVALATQAVLDAVELRGWCKTSGSKGLQMYVPLNTEGATHQGAADFALAVGQVLERQLDGAVTTVMAKDARPGKIFVDWSQNAHHKTTIAPYSLRARPRPTVSTPVTWDEVQECADGEAELVFEAADVLSRVDEHGDLFASVLTVEQELPAPQT 301
[Close]
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Match: A0A7Y1XSV2_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y1XSV2_9ACTN)

HSP 1 Score: 240 bits (613), Expect = 1.000e-76
Identity = 116/178 (65.17%), Postives = 137/178 (76.97%), Query Frame = 1 
Query:    1 PMALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKTSGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRPGKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEGAPLRFQWRDVLQRVEDLGDLFAPLLTTKQELP 534
            PMA   DLESP  +VFD DPGEPATIIEC Q+AL +RDVL  VG++ W KTSGSKG+QLYVPLNTP TH  ASDFALAV QLLE+Q    VT+TMAK  RP KIFIDWSQN+ HKTTI  YS+R +  P+VSTP++WDEV+ CA+G  L F+  DVL+RV++ GDLFA   T +Q LP
Sbjct:  121 PMARCVDLESPTLLVFDLDPGEPATIIECGQVALLIRDVLETVGLEAWAKTSGSKGMQLYVPLNTPHTHRHASDFALAVAQLLEKQHPKAVTSTMAKKERPNKIFIDWSQNSHHKTTIAPYSLRGKDRPSVSTPISWDEVSDCADGEHLHFEAGDVLERVDEFGDLFADTATLEQSLP 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14559.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2AZU2_9ACTN2.780e-9478.77Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A7K1B288_9ACTN1.040e-8974.59Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
A0A6N7FXS3_9ACTN2.460e-8066.30Uncharacterized protein n=1 Tax=Acidimicrobiia bac... [more]
A0A4R7HY14_9ACTN5.990e-8067.58Bifunctional non-homologous end joining protein Li... [more]
A0A2E0RUN8_9ACTN1.200e-7969.23Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A3M2H7G7_ACTSX3.570e-7866.85Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
A0A6C7E0P4_ILUCY3.820e-7865.38Uncharacterized protein n=1 Tax=Ilumatobacter cocc... [more]
A0A7Y1ZVZ9_9ACTN1.980e-7765.59Uncharacterized protein n=1 Tax=Ilumatobacter sp. ... [more]
UPI00034DD2862.400e-7765.76non-homologous end-joining DNA ligase n=1 Tax=Ilum... [more]
A0A7Y1XSV2_9ACTN1.000e-7665.17Uncharacterized protein n=2 Tax=Acidimicrobiales b... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14559contigP-wetherbeei_contig14559:1151..1702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1313172.YM304_15100
Preferred nameligD
PFAMsDNA_ligase_A_C,DNA_ligase_A_M,LigD_N
Model size552
Max annot lvl201174|Actinobacteria
KEGG rclassRC00005
KEGG koko:K01971,ko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,ko03450,map03030,map03410,map03420,map03430,map03450
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0003909,GO:0003910,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0004652,GO:0005488,GO:0005524,GO:0005575,GO:0005623,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006269,GO:0006281,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008144,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016874,GO:0016886,GO:0016895,GO:0017076,GO:0018130,GO:0019438,GO:0030145,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033554,GO:0034061,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0050896,GO:0051716,GO:0070566,GO:0071704,GO:0071897,GO:0071944,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0097747,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons1
Evalue3.45e-78
EggNOG OGsCOG3285@1|root,COG3285@2|Bacteria,2GJPX@201174|Actinobacteria
EC6.5.1.1,6.5.1.6,6.5.1.7
DescriptionDNA polymerase LigD polymerase domain
Cds size549
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.9585097-CDS-P-wetherbeei_contig14559:1150..16991683186025.9585097-CDS-P-wetherbeei_contig14559:1150..1699Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14559 1151..1699 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.970486-UTR-P-wetherbeei_contig14559:1699..17021683186025.970486-UTR-P-wetherbeei_contig14559:1699..1702Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14559 1700..1702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14559.2.1prot_P-wetherbeei_contig14559.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14559 1151..1699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14559.2.1

>prot_P-wetherbeei_contig14559.2.1 ID=prot_P-wetherbeei_contig14559.2.1|Name=mRNA_P-wetherbeei_contig14559.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=183bp
MALSADLESPRAVVFDFDPGEPATIIECCQIALAVRDVLAAVGMDGWPKT
SGSKGLQLYVPLNTPCTHAAASDFALAVGQLLEQQMRNRVTTTMAKAVRP
GKIFIDWSQNARHKTTIGVYSMRARQEPTVSTPVTWDEVAACAEGAPLRF
QWRDVLQRVEDLGDLFAPLLTTKQELPKPATA*
back to top

mRNA from alignment at P-wetherbeei_contig14559:1151..1702-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14559.2.1 ID=mRNA_P-wetherbeei_contig14559.2.1|Name=mRNA_P-wetherbeei_contig14559.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=552bp|location=Sequence derived from alignment at P-wetherbeei_contig14559:1151..1702- (Phaeothamnion wetherbeei SAG_119_79)
CCGATGGCGCTCTCCGCCGATCTGGAATCGCCGCGAGCCGTGGTGTTCGA
CTTCGACCCCGGCGAGCCGGCGACGATCATCGAGTGCTGCCAGATCGCGC
TCGCGGTGCGCGACGTGCTCGCTGCGGTCGGCATGGACGGCTGGCCGAAG
ACGTCGGGCTCGAAGGGGTTGCAGCTGTACGTGCCGCTGAACACGCCGTG
CACGCACGCCGCCGCGAGCGACTTCGCGCTGGCCGTCGGTCAGCTGCTCG
AGCAGCAGATGCGCAACCGCGTCACCACGACGATGGCCAAGGCGGTTCGG
CCGGGGAAGATCTTCATCGACTGGAGCCAGAACGCGCGGCACAAGACGAC
GATCGGCGTGTACTCGATGCGCGCCCGTCAGGAGCCCACGGTGTCGACGC
CGGTCACGTGGGACGAGGTGGCGGCCTGCGCCGAGGGGGCGCCGCTGCGG
TTCCAATGGCGTGACGTGCTGCAGCGGGTGGAGGACCTCGGCGATCTTTT
CGCCCCCTTGCTGACGACGAAGCAGGAGCTGCCGAAGCCCGCCACGGCCT
GA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14559:1151..1702-

>mRNA_P-wetherbeei_contig14559.2.1 ID=mRNA_P-wetherbeei_contig14559.2.1|Name=mRNA_P-wetherbeei_contig14559.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=549bp|location=Sequence derived from alignment at P-wetherbeei_contig14559:1151..1702- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCTCTCCGCCGATCTGGAATCGCCGCGAGCCGTGGTGTTCGACTT
CGACCCCGGCGAGCCGGCGACGATCATCGAGTGCTGCCAGATCGCGCTCG
CGGTGCGCGACGTGCTCGCTGCGGTCGGCATGGACGGCTGGCCGAAGACG
TCGGGCTCGAAGGGGTTGCAGCTGTACGTGCCGCTGAACACGCCGTGCAC
GCACGCCGCCGCGAGCGACTTCGCGCTGGCCGTCGGTCAGCTGCTCGAGC
AGCAGATGCGCAACCGCGTCACCACGACGATGGCCAAGGCGGTTCGGCCG
GGGAAGATCTTCATCGACTGGAGCCAGAACGCGCGGCACAAGACGACGAT
CGGCGTGTACTCGATGCGCGCCCGTCAGGAGCCCACGGTGTCGACGCCGG
TCACGTGGGACGAGGTGGCGGCCTGCGCCGAGGGGGCGCCGCTGCGGTTC
CAATGGCGTGACGTGCTGCAGCGGGTGGAGGACCTCGGCGATCTTTTCGC
CCCCTTGCTGACGACGAAGCAGGAGCTGCCGAAGCCCGCCACGGCCTGA
back to top