mRNA_P-wetherbeei_contig14556.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14556.1.1
Unique NamemRNA_P-wetherbeei_contig14556.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: KISHB_XENTR (Protein kish-B n=4 Tax=Xenopus TaxID=8353 RepID=KISHB_XENTR)

HSP 1 Score: 90.5 bits (223), Expect = 2.150e-22
Identity = 44/71 (61.97%), Postives = 57/71 (80.28%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS+ G+L   LLF+C+CAY R+VPRLRS L+S + G  GVFYKAA+IG RLH  VSI+C++MA Y++
Sbjct:    1 MTNVYSLDGLLVFALLFVCTCAYFRKVPRLRSWLLSEKKGVWGVFYKAAVIGSRLHLAVSISCIAMAFYVL 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: B5XE64_SALSA (Protein kish n=10 Tax=Salmonidae TaxID=8015 RepID=B5XE64_SALSA)

HSP 1 Score: 88.2 bits (217), Expect = 1.760e-21
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G++   LLFIC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+I CLSMA YLV
Sbjct:    1 MTNVYSFDGIVVFGLLFICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAVIGTRLHHAVAITCLSMALYLV 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: B9EL95_SALSA (Protein kish n=11 Tax=Protacanthopterygii TaxID=41705 RepID=B9EL95_SALSA)

HSP 1 Score: 87.0 bits (214), Expect = 5.060e-21
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS+ G++   +LFIC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+I CL+MA YLV
Sbjct:    1 MTNVYSLDGIVVFGILFICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAVIGTRLHHAVAITCLTMALYLV 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: A0A553RLE3_9TELE (Protein kish n=1 Tax=Danionella translucida TaxID=623744 RepID=A0A553RLE3_9TELE)

HSP 1 Score: 87.4 bits (215), Expect = 6.840e-21
Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G+L   LLFIC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+ +CLSMA YLV
Sbjct:   25 MTNVYSFDGILVFGLLFICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAVIGTRLHMLVAASCLSMAFYLV 95
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: A0A6P3VT64_CLUHA (Protein kish n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3VT64_CLUHA)

HSP 1 Score: 85.9 bits (211), Expect = 1.450e-20
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS+ G+L   LL IC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+++CLSMA Y++
Sbjct:    1 MTNVYSLDGILVFGLLLICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAVIGTRLHMAVALSCLSMAFYVI 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: E6ZFE4_DICLA (Protein kish n=27 Tax=Clupeocephala TaxID=186625 RepID=E6ZFE4_DICLA)

HSP 1 Score: 85.5 bits (210), Expect = 2.060e-20
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G+L   LLFIC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+ +CL+MA Y+V
Sbjct:    1 MTNVYSFDGILVFGLLFICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAIIGTRLHIAVAASCLAMAFYIV 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: A0A669BE92_ORENI (Protein kish n=23 Tax=Clupeocephala TaxID=186625 RepID=A0A669BE92_ORENI)

HSP 1 Score: 85.5 bits (210), Expect = 2.060e-20
Identity = 42/71 (59.15%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G+L   LLFIC+CAY+++VPRL + L+S + G  GVFYKAA+IG RLH  V+++CL+MA Y+V
Sbjct:    1 MTNVYSFDGILVFGLLFICTCAYLKKVPRLNNWLLSEKKGVWGVFYKAAVIGTRLHIAVAVSCLAMAFYIV 71
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BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: W5U9I0_ICTPU (Protein kish n=9 Tax=Clupeocephala TaxID=186625 RepID=W5U9I0_ICTPU)

HSP 1 Score: 85.1 bits (209), Expect = 2.920e-20
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G++   LLFIC+CAY+++VPRL S L+S + G  GVFYKAA+IG RLH  V+++CL MA YLV
Sbjct:    1 MTNVYSFDGIVVFGLLFICTCAYLKKVPRLNSWLLSEKKGVWGVFYKAAIIGTRLHIAVALSCLFMAFYLV 71
[Close]
BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: A0A671WFC6_SPAAU (Protein kish n=4 Tax=Clupeocephala TaxID=186625 RepID=A0A671WFC6_SPAAU)

HSP 1 Score: 85.1 bits (209), Expect = 2.920e-20
Identity = 43/71 (60.56%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS  G+L   LLFIC+CAY+++VPR+ S L+S + G  GVFYKAA+IG RLH  V+I+CL MA Y+V
Sbjct:    1 MTNVYSFDGILVFGLLFICTCAYLKKVPRINSWLLSEKKGVWGVFYKAAVIGTRLHIAVAISCLVMAFYIV 71
[Close]
BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Match: A0A8C5KDI8_JACJA (Protein kish n=3 Tax=Rodentia TaxID=9989 RepID=A0A8C5KDI8_JACJA)

HSP 1 Score: 85.1 bits (209), Expect = 2.920e-20
Identity = 41/71 (57.75%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRS-LVSPQPGPLGVFYKAALIGRRLHWCVSIACLSMAAYLV 210
            MTNVYS+ G+L   LLF+C+CAY ++VPRL+S L+S + G  GVFYKAA+IG RLH  V++AC+ MA Y++
Sbjct:    1 MTNVYSLDGILVFGLLFVCTCAYFKKVPRLKSWLLSEKKGVWGVFYKAAVIGTRLHAAVAVACIVMAFYIL 71
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14556.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
KISHB_XENTR2.150e-2261.97Protein kish-B n=4 Tax=Xenopus TaxID=8353 RepID=KI... [more]
B5XE64_SALSA1.760e-2163.38Protein kish n=10 Tax=Salmonidae TaxID=8015 RepID=... [more]
B9EL95_SALSA5.060e-2160.56Protein kish n=11 Tax=Protacanthopterygii TaxID=41... [more]
A0A553RLE3_9TELE6.840e-2163.38Protein kish n=1 Tax=Danionella translucida TaxID=... [more]
A0A6P3VT64_CLUHA1.450e-2059.15Protein kish n=1 Tax=Clupea harengus TaxID=7950 Re... [more]
E6ZFE4_DICLA2.060e-2060.56Protein kish n=27 Tax=Clupeocephala TaxID=186625 R... [more]
A0A669BE92_ORENI2.060e-2059.15Protein kish n=23 Tax=Clupeocephala TaxID=186625 R... [more]
W5U9I0_ICTPU2.920e-2060.56Protein kish n=9 Tax=Clupeocephala TaxID=186625 Re... [more]
A0A671WFC6_SPAAU2.920e-2060.56Protein kish n=4 Tax=Clupeocephala TaxID=186625 Re... [more]
A0A8C5KDI8_JACJA2.920e-2057.75Protein kish n=3 Tax=Rodentia TaxID=9989 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14556contigP-wetherbeei_contig14556:106..324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog8364.ENSXETP00000017539
Preferred nameTMEM167B
PFAMsDUF1242
Model size219
Max annot lvl33208|Metazoa
Hectar predicted targeting categorysignal peptide
GOsGO:0002790,GO:0005575,GO:0005623,GO:0006810,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0032940,GO:0033036,GO:0042886,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0071702,GO:0071705
Exons1
Evalue3.52e-23
EggNOG OGsKOG3808@1|root,KOG3808@2759|Eukaryota,3A6BW@33154|Opisthokonta,3BT5Z@33208|Metazoa,3D9C8@33213|Bilateria,48FUW@7711|Chordata,49CU3@7742|Vertebrata
DescriptionInvolved in the early part of the secretory pathway
Cds size219
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.7768693-CDS-P-wetherbeei_contig14556:105..3241683186025.7768693-CDS-P-wetherbeei_contig14556:105..324Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14556 106..324 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14556.1.1prot_P-wetherbeei_contig14556.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14556 106..324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14556.1.1

>prot_P-wetherbeei_contig14556.1.1 ID=prot_P-wetherbeei_contig14556.1.1|Name=mRNA_P-wetherbeei_contig14556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=73bp
MTNVYSMQGMLTLVLLFICSCAYIRRVPRLRSLVSPQPGPLGVFYKAALI
GRRLHWCVSIACLSMAAYLVIG*
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mRNA from alignment at P-wetherbeei_contig14556:106..324-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14556.1.1 ID=mRNA_P-wetherbeei_contig14556.1.1|Name=mRNA_P-wetherbeei_contig14556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig14556:106..324- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAATGTCTACTCCATGCAAGGCATGCTGACACTCGTCCTTCTCTT
CATCTGCTCGTGCGCCTACATCCGGCGGGTGCCGCGCCTGCGGTCTCTTG
TGAGCCCCCAGCCGGGCCCGCTGGGTGTCTTTTACAAGGCGGCTCTGATC
GGCCGACGGCTCCACTGGTGCGTGTCCATAGCCTGCTTAAGCATGGCGGC
GTACCTTGTCATTGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14556:106..324-

>mRNA_P-wetherbeei_contig14556.1.1 ID=mRNA_P-wetherbeei_contig14556.1.1|Name=mRNA_P-wetherbeei_contig14556.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=219bp|location=Sequence derived from alignment at P-wetherbeei_contig14556:106..324- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCAATGTCTACTCCATGCAAGGCATGCTGACACTCGTCCTTCTCTT
CATCTGCTCGTGCGCCTACATCCGGCGGGTGCCGCGCCTGCGGTCTCTTG
TGAGCCCCCAGCCGGGCCCGCTGGGTGTCTTTTACAAGGCGGCTCTGATC
GGCCGACGGCTCCACTGGTGCGTGTCCATAGCCTGCTTAAGCATGGCGGC
GTACCTTGTCATTGGCTGA
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