mRNA_P-wetherbeei_contig14541.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14541.1.1
Unique NamemRNA_P-wetherbeei_contig14541.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A7K1B0F1_9ACTN (FMN_red domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A7K1B0F1_9ACTN)

HSP 1 Score: 124 bits (311), Expect = 8.150e-34
Identity = 60/98 (61.22%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    4 YSVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTD---LPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            +  VA  GS+RAASSN GLV+LA+R+AP +L I   +   +  +LPFYN+DLE++PPA V +WR LV GADALLIGMPE+NF P+A+AKNAIDW++RP
Sbjct:    3 FRAVAISGSLRAASSNTGLVRLAQRLAPADLTIDFDEPQAVIQQLPFYNEDLEADPPAPVLRWRELVSGADALLIGMPEHNFSPAAVAKNAIDWLTRP 100
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BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A7X9KHP4_9ACTN (NAD(P)H-dependent oxidoreductase n=2 Tax=Actinobacteria TaxID=201174 RepID=A0A7X9KHP4_9ACTN)

HSP 1 Score: 118 bits (295), Expect = 1.580e-31
Identity = 55/95 (57.89%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:    4 YSVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            ++ +AF GS+R  SSN  LV+LA+RIAPPEL I + D   +LP+ N DLE++PP  V +W A + GADAL+IGMPEYN  P+A+AKNAIDW +RP
Sbjct:    6 FAAIAFSGSLRNGSSNTALVRLAQRIAPPELTIEIIDWVDQLPWMNPDLETDPPEIVLRWWAALRGADALIIGMPEYNATPTALAKNAIDWATRP 100
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BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A524B2I3_9ACTN (FMN_red domain-containing protein n=1 Tax=Acidimicrobiales bacterium mtb01 TaxID=1967499 RepID=A0A524B2I3_9ACTN)

HSP 1 Score: 113 bits (282), Expect = 1.060e-29
Identity = 55/94 (58.51%), Postives = 68/94 (72.34%), Query Frame = 1 
Query:    7 SVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            SV+A  GS+R  SSN GLV++A R+AP +L I       ELPFYN+DLES+PPA VR+WR  V   DAL +  PEYNFGP+ + KNAIDWV+RP
Sbjct:    4 SVLAISGSLRHNSSNTGLVRMAIRLAPADLVIEHWTRLGELPFYNEDLESDPPAIVREWRDAVSARDALFVAAPEYNFGPTGVLKNAIDWVTRP 97
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BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A3C2B6I3_9ACTN (FMN_red domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2B6I3_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 3.620e-29
Identity = 49/95 (51.58%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    4 YSVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            +  +AF GS+R  SSN  LV++A+R+APPEL I + D   ELP+ N DLE++PP  V++W   +  ADAL++GMPEYN+ P+ +AKNA+DW +RP
Sbjct:    5 FRAIAFSGSLRNGSSNTALVRMAQRLAPPELHIEIIDWVHELPWMNPDLETDPPEPVQRWWNALREADALIVGMPEYNWNPTPLAKNALDWATRP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A094PMC3_9ACTN (FMN_red domain-containing protein n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PMC3_9ACTN)

HSP 1 Score: 111 bits (278), Expect = 5.130e-29
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   25 GSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLE--SNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            GSMR  SSNRGLVKLA+++AP ++  TV      LPFYN+DLE  +  PA V+QWR LV  ADAL I  PEYNFGPSA+ KNAIDW SRP
Sbjct:   10 GSMRQESSNRGLVKLAQKLAPTDVTFTVHSDIGALPFYNEDLEDPARTPAVVQQWRDLVRQADALFIAAPEYNFGPSAVLKNAIDWASRP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A094PM35_9ACTN (FMN_red domain-containing protein n=1 Tax=actinobacterium acAcidi TaxID=1504320 RepID=A0A094PM35_9ACTN)

HSP 1 Score: 108 bits (271), Expect = 5.840e-28
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:   25 GSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLE--SNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            GS+R  SSN+GLVKLA+++ P  +     D    LPFYN+DLE  S+ PASVR+WR LV  +DAL I  PEYNFGPSA+ KNAIDW +RP
Sbjct:   10 GSLRQDSSNQGLVKLAQKLTPANVTFAFYDKIGSLPFYNEDLEDPSHTPASVREWRELVSNSDALFIASPEYNFGPSAVLKNAIDWATRP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A6I3EKK8_9ACTN (FMN_red domain-containing protein n=2 Tax=root TaxID=1 RepID=A0A6I3EKK8_9ACTN)

HSP 1 Score: 108 bits (269), Expect = 1.170e-27
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1 
Query:   25 GSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLE--SNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            GS+R  SSN+GLVKLA+++AP ++  T  D    LPFYN+DLE  S  P++V +WR LV  ADAL I  PEYNFGPSA+ KNAIDW +RP
Sbjct:   10 GSLRQESSNQGLVKLAQKLAPTDVTFTFYDKIGSLPFYNEDLEEPSRTPSNVVEWRNLVTSADALFIASPEYNFGPSAVLKNAIDWATRP 99
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: A0A4P6UNA8_9BURK (NAD(P)H-dependent oxidoreductase n=1 Tax=Hylemonella gracilis TaxID=80880 RepID=A0A4P6UNA8_9BURK)

HSP 1 Score: 102 bits (255), Expect = 1.470e-25
Identity = 48/91 (52.75%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    7 SVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWV 279
            ++VA  GS+RAAS N  + +LA R+APP LR++V +   +LP +N DLE++PP +VR+WRA V+ ADALLI  PEY  G S + KNA+DW+
Sbjct:    2 NIVAISGSLRAASINSAVCRLATRLAPPVLRVSVFEDLEDLPLFNPDLEASPPETVRRWRATVDAADALLIASPEYAHGISGVMKNALDWL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: F3KSG9_9BURK (NADPH-dependent FMN reductase n=1 Tax=Hylemonella gracilis ATCC 19624 TaxID=887062 RepID=F3KSG9_9BURK)

HSP 1 Score: 100 bits (250), Expect = 8.980e-25
Identity = 49/91 (53.85%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    7 SVVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWV 279
            ++VA  GS+RAAS N  + ++A R+APP LRI+V +   +LP +N DLE+ PP SVR WRA V  ADALLI  PEY  G S + KNA+DW+
Sbjct:    2 NIVAVSGSLRAASINSAVCRVAARLAPPALRISVFEGLRDLPLFNPDLEAQPPESVRHWRATVAAADALLIASPEYAHGISGVMKNALDWL 92
[Close]
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Match: UPI0017E06259 (NAD(P)H-dependent oxidoreductase n=1 Tax=Catenulispora sp. TaxID=1962977 RepID=UPI0017E06259)

HSP 1 Score: 91.7 bits (226), Expect = 3.800e-21
Identity = 42/93 (45.16%), Postives = 63/93 (67.74%), Query Frame = 1 
Query:   10 VVAFGGSMRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQWRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP 288
            ++AF G++R AS+N  LV+ A+++AP  + I + D  +ELP+++ DLE+ PPASV   RA +  AD +LI  PEYN+    + KN +DW SRP
Sbjct:    5 ILAFSGALRKASTNSALVRAAKQLAPEGVEIEIYDGLAELPYFDQDLEAEPPASVVDLRAKIAAADGVLIASPEYNYSIPGVLKNGLDWASRP 97
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14541.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7K1B0F1_9ACTN8.150e-3461.22FMN_red domain-containing protein n=2 Tax=root Tax... [more]
A0A7X9KHP4_9ACTN1.580e-3157.89NAD(P)H-dependent oxidoreductase n=2 Tax=Actinobac... [more]
A0A524B2I3_9ACTN1.060e-2958.51FMN_red domain-containing protein n=1 Tax=Acidimic... [more]
A0A3C2B6I3_9ACTN3.620e-2951.58FMN_red domain-containing protein n=1 Tax=Acidimic... [more]
A0A094PMC3_9ACTN5.130e-2963.33FMN_red domain-containing protein n=1 Tax=actinoba... [more]
A0A094PM35_9ACTN5.840e-2858.89FMN_red domain-containing protein n=1 Tax=actinoba... [more]
A0A6I3EKK8_9ACTN1.170e-2758.89FMN_red domain-containing protein n=2 Tax=root Tax... [more]
A0A4P6UNA8_9BURK1.470e-2552.75NAD(P)H-dependent oxidoreductase n=1 Tax=Hylemonel... [more]
F3KSG9_9BURK8.980e-2553.85NADPH-dependent FMN reductase n=1 Tax=Hylemonella ... [more]
UPI0017E062593.800e-2145.16NAD(P)H-dependent oxidoreductase n=1 Tax=Catenulis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14541contigP-wetherbeei_contig14541:4..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog887062.HGR_06991
PFAMsFMN_red
Model size288
Max annot lvl28216|Betaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.07e-23
EggNOG OGsCOG0431@1|root,COG0431@2|Bacteria,1N305@1224|Proteobacteria,2VTD8@28216|Betaproteobacteria,4AFBF@80864|Comamonadaceae
DescriptionNADPH-dependent FMN reductase
Cds size258
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.3907278-CDS-P-wetherbeei_contig14541:3..2611683186025.3907278-CDS-P-wetherbeei_contig14541:3..261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14541 4..261 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.4009132-UTR-P-wetherbeei_contig14541:261..2911683186025.4009132-UTR-P-wetherbeei_contig14541:261..291Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14541 262..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14541.1.1prot_P-wetherbeei_contig14541.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14541 4..261 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14541.1.1

>prot_P-wetherbeei_contig14541.1.1 ID=prot_P-wetherbeei_contig14541.1.1|Name=mRNA_P-wetherbeei_contig14541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=86bp
MRAASSNRGLVKLAERIAPPELRITVTDLPSELPFYNDDLESNPPASVRQ
WRALVEGADALLIGMPEYNFGPSAMAKNAIDWVSRP
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mRNA from alignment at P-wetherbeei_contig14541:4..291-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14541.1.1 ID=mRNA_P-wetherbeei_contig14541.1.1|Name=mRNA_P-wetherbeei_contig14541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=288bp|location=Sequence derived from alignment at P-wetherbeei_contig14541:4..291- (Phaeothamnion wetherbeei SAG_119_79)
GCGTACTCGGTGGTGGCGTTCGGGGGCAGCATGCGGGCGGCGTCGTCCAA
CCGTGGGCTGGTCAAGCTGGCGGAGCGAATCGCCCCGCCGGAGTTGCGGA
TCACGGTCACCGACCTGCCGAGCGAGCTGCCGTTCTACAACGACGACCTG
GAGAGCAACCCGCCGGCGTCGGTGCGCCAGTGGCGGGCGCTGGTCGAGGG
CGCCGACGCACTGCTGATCGGCATGCCCGAGTACAACTTCGGCCCGTCGG
CGATGGCCAAGAACGCCATCGACTGGGTCAGCCGGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14541:4..291-

>mRNA_P-wetherbeei_contig14541.1.1 ID=mRNA_P-wetherbeei_contig14541.1.1|Name=mRNA_P-wetherbeei_contig14541.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=258bp|location=Sequence derived from alignment at P-wetherbeei_contig14541:4..291- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGGGCGGCGTCGTCCAACCGTGGGCTGGTCAAGCTGGCGGAGCGAAT
CGCCCCGCCGGAGTTGCGGATCACGGTCACCGACCTGCCGAGCGAGCTGC
CGTTCTACAACGACGACCTGGAGAGCAACCCGCCGGCGTCGGTGCGCCAG
TGGCGGGCGCTGGTCGAGGGCGCCGACGCACTGCTGATCGGCATGCCCGA
GTACAACTTCGGCCCGTCGGCGATGGCCAAGAACGCCATCGACTGGGTCA
GCCGGCCC
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