mRNA_P-wetherbeei_contig14534.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14534.2.1
Unique NamemRNA_P-wetherbeei_contig14534.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A258L5U8_9HYPH (Endolytic peptidoglycan transglycosylase RlpA n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A258L5U8_9HYPH)

HSP 1 Score: 150 bits (378), Expect = 1.660e-43
Identity = 74/99 (74.75%), Postives = 85/99 (85.86%), Query Frame = 1
Query:  139 SLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            S+  G + SG+ SYYWQPQRVASGG FNPNAMTAAHKTLPFGT+VRVTN NNGR+V VTINDRGP++ GR+IDLS+AAA  VGMT SG+A VS+ VLGR
Sbjct:   71 SVAAGGSYSGMGSYYWQPQRVASGGWFNPNAMTAAHKTLPFGTKVRVTNRNNGRSVVVTINDRGPYIKGRIIDLSKAAAKQVGMTASGIAPVSVTVLGR 169          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A2S5MEG6_HYPSQ (Endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A2S5MEG6_HYPSQ)

HSP 1 Score: 145 bits (367), Expect = 9.250e-42
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 1
Query:  133 LASLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            +A  +GG+  SG ASYYWQPQRVASGG FNPNAMTAAHKTLPFGT+VRVTN NNGR+V VTINDRGP++ GR+IDLS+AAA  + M GSG+  VS+ V+GR
Sbjct:   75 VAYSSGGTTYSGKASYYWQPQRVASGGWFNPNAMTAAHKTLPFGTKVRVTNKNNGRSVVVTINDRGPYIKGRIIDLSKAAAHSISMQGSGVVPVSVTVIGR 175          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: UPI000931B055 (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI000931B055)

HSP 1 Score: 145 bits (366), Expect = 1.130e-41
Identity = 73/99 (73.74%), Postives = 84/99 (84.85%), Query Frame = 1
Query:  139 SLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            + +G  A SGIASYYWQ Q+ ASG  FNP+AMTAAH+TLPFGT+VRVTN NNGR+VTVTINDRGPF+ GRVIDLS+ AA V+GM GSGLA VS+ VLGR
Sbjct:   72 AYSGSHAKSGIASYYWQGQKTASGARFNPSAMTAAHRTLPFGTKVRVTNRNNGRSVTVTINDRGPFIKGRVIDLSKGAAGVIGMQGSGLAPVSIEVLGR 170          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A7C2M2I1_9HYPH (Endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2M2I1_9HYPH)

HSP 1 Score: 147 bits (372), Expect = 1.300e-41
Identity = 75/107 (70.09%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  115 ARRGPALASLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            AR   A  SL+   AG GIASYYWQPQRVA+GG F+PNAMTAAHKTLPFGT+VRVT++ NGR V V INDRGP+VAGR+IDLS+AAA+++GMT  G+ARV + VLGR
Sbjct:  143 ARAAWAKRSLSTSGAGHGIASYYWQPQRVAAGGWFDPNAMTAAHKTLPFGTKVRVTHLGNGRTVDVKINDRGPYVAGRIIDLSKAAAALLGMTQQGIARVKVEVLGR 249          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A6N6SU47_9HYPH (Endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A6N6SU47_9HYPH)

HSP 1 Score: 144 bits (364), Expect = 1.770e-40
Identity = 71/95 (74.74%), Postives = 82/95 (86.32%), Query Frame = 1
Query:  151 GSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            GS   G+ASYYWQPQRVA+GG FNPNAMTAAHKTLPFGTRVRVT++ NGR+V V INDRGP+VAGR+IDLS+AAA V+GM   G+ARV + VLGR
Sbjct:  149 GSGQLGVASYYWQPQRVAAGGWFNPNAMTAAHKTLPFGTRVRVTHLGNGRSVEVKINDRGPYVAGRIIDLSKAAAGVLGMQSQGIARVQVTVLGR 243          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A1I7N001_9HYPH (Endolytic peptidoglycan transglycosylase RlpA n=2 Tax=Hyphomicrobium TaxID=81 RepID=A0A1I7N001_9HYPH)

HSP 1 Score: 142 bits (357), Expect = 2.000e-40
Identity = 74/103 (71.84%), Postives = 82/103 (79.61%), Query Frame = 1
Query:  130 ALASLTGGSAGS-GIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            A     GGS GS G+ASYYWQ Q+ ASG  FNP  MTAAH+TLPFGTRVRVTN +NG++V VTINDRGPFV GRVIDLSR AA  + MTG+GLARVSL VLGR
Sbjct:   59 AARKSVGGSGGSHGVASYYWQGQKTASGARFNPEGMTAAHRTLPFGTRVRVTNQSNGQSVVVTINDRGPFVGGRVIDLSRGAARQINMTGAGLARVSLEVLGR 161          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: UPI00037EE49A (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI00037EE49A)

HSP 1 Score: 142 bits (359), Expect = 2.270e-40
Identity = 73/100 (73.00%), Postives = 85/100 (85.00%), Query Frame = 1
Query:  136 ASLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            AS  GGS  +GIASYYWQ Q  ASG  FNP+AMTAAH+TLPFGTRV VTN +NGR+VTVTINDRGPF+ GR+IDLS+AAA  +GM G+GLARVS++VLGR
Sbjct:   92 ASYGGGS--TGIASYYWQGQMTASGARFNPSAMTAAHRTLPFGTRVLVTNQSNGRSVTVTINDRGPFIKGRIIDLSKAAAGAIGMQGAGLARVSISVLGR 189          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: V5SD29_9HYPH (Endolytic peptidoglycan transglycosylase RlpA n=2 Tax=Hyphomicrobium TaxID=81 RepID=V5SD29_9HYPH)

HSP 1 Score: 142 bits (359), Expect = 3.030e-40
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 1
Query:  139 SLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            +L+ G    GIASYYWQPQ+VASGG FNPNA+TAAH++LPFGT+VRVTN  NG++V VTINDRGPF+ GR+IDLS+ AA V+GM G+GLA VS+ V+GR
Sbjct:  101 TLSSGGGSHGIASYYWQPQKVASGGYFNPNALTAAHRSLPFGTKVRVTNKRNGKSVVVTINDRGPFIKGRIIDLSKRAAGVIGMQGAGLAPVSVEVVGR 199          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: UPI0009FB8073 (septal ring lytic transglycosylase RlpA family protein n=1 Tax=Hyphomicrobium sp. CS1BSMeth3 TaxID=1892844 RepID=UPI0009FB8073)

HSP 1 Score: 142 bits (359), Expect = 3.400e-40
Identity = 69/90 (76.67%), Postives = 79/90 (87.78%), Query Frame = 1
Query:  166 GIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            G+ASYYWQPQRVASGG FNPNAMTAAHKTLPFGTRVRVT+  NGR+V V INDRGP+V GR+IDLS+AAA V+GM G G+A+V + VLGR
Sbjct:  115 GVASYYWQPQRVASGGWFNPNAMTAAHKTLPFGTRVRVTHAGNGRSVVVKINDRGPYVRGRIIDLSKAAAGVIGMHGQGIAQVRMEVLGR 204          
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Match: A0A7Y5CY75_HYPSQ (Endolytic peptidoglycan transglycosylase RlpA n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A7Y5CY75_HYPSQ)

HSP 1 Score: 140 bits (354), Expect = 7.890e-40
Identity = 70/102 (68.63%), Postives = 85/102 (83.33%), Query Frame = 1
Query:  130 ALASLTGGSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGRAVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR 435
            A  S +GG   +G ASYYWQPQ +ASGG FNPNAMTAAHKTLPFGT+VRVTN NNG++V VTINDRGP++AGR+IDLS+AAA  + M GSG+  V++AVLG+
Sbjct:   71 ASQSNSGGYTLTGKASYYWQPQALASGGRFNPNAMTAAHKTLPFGTKVRVTNQNNGQSVVVTINDRGPYIAGRIIDLSKAAAHSINMQGSGVVPVTVAVLGK 172          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14534.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A258L5U8_9HYPH1.660e-4374.75Endolytic peptidoglycan transglycosylase RlpA n=2 ... [more]
A0A2S5MEG6_HYPSQ9.250e-4271.29Endolytic peptidoglycan transglycosylase RlpA n=1 ... [more]
UPI000931B0551.130e-4173.74septal ring lytic transglycosylase RlpA family pro... [more]
A0A7C2M2I1_9HYPH1.300e-4170.09Endolytic peptidoglycan transglycosylase RlpA n=1 ... [more]
A0A6N6SU47_9HYPH1.770e-4074.74Endolytic peptidoglycan transglycosylase RlpA n=1 ... [more]
A0A1I7N001_9HYPH2.000e-4071.84Endolytic peptidoglycan transglycosylase RlpA n=2 ... [more]
UPI00037EE49A2.270e-4073.00septal ring lytic transglycosylase RlpA family pro... [more]
V5SD29_9HYPH3.030e-4068.69Endolytic peptidoglycan transglycosylase RlpA n=2 ... [more]
UPI0009FB80733.400e-4076.67septal ring lytic transglycosylase RlpA family pro... [more]
A0A7Y5CY75_HYPSQ7.890e-4068.63Endolytic peptidoglycan transglycosylase RlpA n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14534contigP-wetherbeei_contig14534:551..988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1267005.KB911259_gene3857
Preferred namerlpA
PFAMsDPBB_1
Model size438
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03642
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.33e-41
EggNOG OGsCOG0797@1|root,COG0797@2|Bacteria,1MZ8S@1224|Proteobacteria,2UBTC@28211|Alphaproteobacteria,3N7AX@45401|Hyphomicrobiaceae
DescriptionLytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
Cds size438
COG categoryM
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.1226304-CDS-P-wetherbeei_contig14534:550..9881683186025.1226304-CDS-P-wetherbeei_contig14534:550..988Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14534 551..988 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14534.2.1prot_P-wetherbeei_contig14534.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14534 551..988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14534.2.1

>prot_P-wetherbeei_contig14534.2.1 ID=prot_P-wetherbeei_contig14534.2.1|Name=mRNA_P-wetherbeei_contig14534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=146bp
GSDRVAPSSRAERRSTRNTRVTRERTVRSAEARQSRRGARRGPALASLTG
GSAGSGIASYYWQPQRVASGGMFNPNAMTAAHKTLPFGTRVRVTNMNNGR
AVTVTINDRGPFVAGRVIDLSRAAASVVGMTGSGLARVSLAVLGR*
back to top

mRNA from alignment at P-wetherbeei_contig14534:551..988-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14534.2.1 ID=mRNA_P-wetherbeei_contig14534.2.1|Name=mRNA_P-wetherbeei_contig14534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig14534:551..988- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGATCGCGTAGCGCCGTCGTCCCGCGCCGAGCGGCGCAGCACCCG CAATACCCGGGTGACGCGCGAGCGGACTGTCCGCTCGGCCGAGGCTCGTC AGTCGCGCCGCGGCGCACGCCGCGGCCCCGCATTGGCCAGCCTCACGGGC GGGTCGGCCGGCTCGGGCATCGCGTCCTACTATTGGCAGCCGCAACGGGT CGCTTCGGGTGGCATGTTCAATCCGAACGCCATGACGGCTGCTCACAAGA CACTGCCGTTCGGCACCCGCGTTCGCGTGACGAACATGAACAATGGCCGT GCCGTCACGGTGACCATCAACGACCGCGGCCCCTTCGTCGCCGGTCGCGT GATCGATCTGTCGCGCGCAGCGGCTTCCGTGGTCGGCATGACCGGCTCGG GCCTCGCCCGCGTCAGCCTCGCCGTACTCGGCCGCTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14534:551..988-

>mRNA_P-wetherbeei_contig14534.2.1 ID=mRNA_P-wetherbeei_contig14534.2.1|Name=mRNA_P-wetherbeei_contig14534.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=438bp|location=Sequence derived from alignment at P-wetherbeei_contig14534:551..988- (Phaeothamnion wetherbeei SAG_119_79)
GGCAGCGATCGCGTAGCGCCGTCGTCCCGCGCCGAGCGGCGCAGCACCCG
CAATACCCGGGTGACGCGCGAGCGGACTGTCCGCTCGGCCGAGGCTCGTC
AGTCGCGCCGCGGCGCACGCCGCGGCCCCGCATTGGCCAGCCTCACGGGC
GGGTCGGCCGGCTCGGGCATCGCGTCCTACTATTGGCAGCCGCAACGGGT
CGCTTCGGGTGGCATGTTCAATCCGAACGCCATGACGGCTGCTCACAAGA
CACTGCCGTTCGGCACCCGCGTTCGCGTGACGAACATGAACAATGGCCGT
GCCGTCACGGTGACCATCAACGACCGCGGCCCCTTCGTCGCCGGTCGCGT
GATCGATCTGTCGCGCGCAGCGGCTTCCGTGGTCGGCATGACCGGCTCGG
GCCTCGCCCGCGTCAGCCTCGCCGTACTCGGCCGCTGA
back to top