mRNA_P-wetherbeei_contig14531.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14531.1.1
Unique NamemRNA_P-wetherbeei_contig14531.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A3D5DBS1_9GAMM (Glycosyltransferase family 1 protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DBS1_9GAMM)

HSP 1 Score: 217 bits (553), Expect = 7.450e-64
Identity = 110/235 (46.81%), Postives = 149/235 (63.40%), Query Frame = 3
Query:  384 LALVARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            L L+ RR + W++ QN DDLALL+ H +    R  +I G G+D   F F+ L      LVILPARL+RDKG+ EFV AA +++     +RF +VGA D  NP +++   + RW+  G +EWW HR DM AVY QA IVCLPSYREG+P+ LLEAAACGRPL+A+DV GCRE+C  G  G  VP R  + L  A++ ++   AL  +   A R  VE+E++++ I  QT   Y  +
Sbjct:  146 LRLLLRRPNVWIIVQNPDDLALLQTHKVGIPDRIRLIPGVGVDTSVFTFSELKFSGPCLVILPARLIRDKGIEEFVEAARKIKQSDPTIRFVVVGAEDPDNPASIESSVVDRWLRKGIIEWWGHRDDMTAVYQQARIVCLPSYREGMPKVLLEAAACGRPLVASDVAGCREVCRHGVNGTLVPPRASDELATAILNVMSSSALQVAYGTAGRRIVESEYSIEQIGQQTHECYENI 380          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A1E2UN28_9GAMM (Glycosyl transferase family 1 n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A1E2UN28_9GAMM)

HSP 1 Score: 213 bits (542), Expect = 2.330e-62
Identity = 129/307 (42.02%), Postives = 179/307 (58.31%), Query Frame = 3
Query:  195 MARSSTVVGLNRCHARARSG-----SIAPGVAQADIARRAGLALVAEALSGTARVHRTRLYLXXXXVLLAL-----VARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQ 1085
            +A   T++GL R +   +       +I P +     AR AG++ V  A+SG   V   R +      +  L     +  RD  WV+ QN DD   L   G  +  +  +I G+G+DL +F  TP       LV+LPAR+L DKGV EFVAAA ++ A+    RFALVG  D +NP +V  + LA W     VEWW +R+DM+AV+ +A I+CLPSYREGLP+ LLEA A GR ++ TDVPGCRE+ IDGE GL VPAR  E L EAL +++   AL  S  +  R   E+EF+++ +  Q +++YRQ
Sbjct:   67 LAEIKTILGLYRLYKELQPTLVHHVTIKPVLYGTLAARLAGVSAVVNAISGLGFVFLARGWFSSLARVAVLNSYRWLFSRDRLWVIVQNNDDYHYLLDEGCLSQEKIELIRGSGVDLSQFNMTP-ETAQVPLVVLPARMLWDKGVGEFVAAAQKLHAMGVKARFALVGGIDPSNPKSVPAKKLAEWARESDVEWWGNRQDMSAVFRRANIICLPSYREGLPKVLLEAVASGRAIVTTDVPGCREVVIDGENGLLVPARQSEPLAEALEKLINRQALRQSMGERGRQMAESEFSIEQVIEQHMSIYRQ 372          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A1J5SEN8_9ZZZZ (N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5SEN8_9ZZZZ)

HSP 1 Score: 212 bits (540), Expect = 4.500e-62
Identity = 131/286 (45.80%), Postives = 167/286 (58.39%), Query Frame = 3
Query:  255 SIAPGVAQADIARRAGLALVAEALSGTARV-----HRTRLYLXXXXVLLALVARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYR-EGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQLSG 1094
            ++ P +  A  AR A +  V  AL+G   V      + RL        L L      + ++ QN DD  +L   G+   AR  +I G+G+D++ F  +P  P    LV+LP+RLL DKGV EFVAAA  +R      RFALVG  D     A+    L  W + G VEWW  R DM AV A +++VCLPSYR EGLP+ LLEAAACGRPL+ATDVPGCREI IDG  GL VP RD   L EA+ R+L D  L A+  +  R  VE EF+ + +  QTLALYR+L+G
Sbjct:   90 ALKPALYGAIAARLARVPAVVNALAGLGFVFASASRKARLLRPWVVGALRLSIDAKGSALIVQNPDDRKMLVEAGVVRAARVRLIRGSGVDIRRFALSP-EPAGTPLVMLPSRLLWDKGVGEFVAAAKLLRERGVAARFALVGDSDPETAAAIPVGQLQAWQSGGAVEWWGRREDMPAVLASSHVVCLPSYRGEGLPKVLLEAAACGRPLVATDVPGCREIVIDGGNGLLVPPRDAPALAEAIGRLLADPGLRAAMGRRGRELVETEFSEERVVAQTLALYRELAG 374          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: UPI0007320997 (glycosyltransferase family 4 protein n=1 Tax=Thiohalocapsa sp. ML1 TaxID=1431688 RepID=UPI0007320997)

HSP 1 Score: 211 bits (538), Expect = 1.270e-61
Identity = 134/276 (48.55%), Postives = 167/276 (60.51%), Query Frame = 3
Query:  267 GVAQADIARRAGLALVAEALSGTARVHRTRLYLXXXXVLLALVARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQLSG 1094
            G A A +A  AG+  V  A S  AR+ R  L L    +L     R     V+ QN DD A LR +   +   A++I GAG+DL  F   P PP     V+L +R+L DKG+ EFV AAA +RA    +R ALVG  D +NP AV    L +W  +G VEWW HR DM AV A A+IVCLPSYREGLP  L+EAAA G PL+ATDVPGCRE+  DGE GL VP RD   L +AL R+ GD AL +   +A+R   EAE  +  +A +TLA+YR+L G
Sbjct:  117 GRAPALVATLAGMGYVFTATSPRARLLRAGLVLAYRALLGQPRVR-----VIVQNPDDQAELRRNAGVD---AALIRGAGVDLARFTPAP-PPPGPVTVVLASRMLWDKGLQEFVDAAAVLRARGVPLRMALVGKPDPSNPSAVPEAQLRQWHDSGAVEWWGHRADMPAVLAAAHIVCLPSYREGLPTILIEAAAAGLPLVATDVPGCREVVRDGENGLLVPPRDAAALADALARLAGDAALRSDYGRASRRLAEAELGIGRVAEETLAVYRELLG 383          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A3M0Y459_9PROT (Glycosyltransferase family 1 protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M0Y459_9PROT)

HSP 1 Score: 208 bits (529), Expect = 4.280e-60
Identity = 120/226 (53.10%), Postives = 141/226 (62.39%), Query Frame = 3
Query:  417 VLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKA--LVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            V+ QN DD       G+    R  +I G+G+D+  F   P PP S    +V+LPAR+LRDKGV EFVAAA  +RA     RF LVGA D  NP A+   DL  W A GTVEW     DM AV A A+IVCLPSYREGLP++L+EAAAC RP++ATDVPGCREI   GE  L VP RD   L EAL R++ + AL        RA  EAEF LD +  QTLALYR L
Sbjct:  157 VIFQNPDDRDWFIGRGLVKRDRWVLIKGSGVDMARFAPMPEPPESLGPPVVVLPARMLRDKGVAEFVAAARALRARGVAARFVLVGASDPGNPTAIPESDLRAWHAEGTVEWHGPAADMPAVLAGAHIVCLPSYREGLPKSLIEAAACARPIVATDVPGCREIARHGENALLVPPRDAAALAEALARLIAEPALRRRLGARGRAIAEAEFALDSVIDQTLALYRTL 382          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A849S853_9GAMM (Glycosyltransferase family 4 protein n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A849S853_9GAMM)

HSP 1 Score: 205 bits (522), Expect = 2.250e-59
Identity = 126/272 (46.32%), Postives = 163/272 (59.93%), Query Frame = 3
Query:  288 ARRAGLALVAEALSGTARV---HRTRLYLXXXXVLLA--LVARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            AR AG+ +V  AL+G   +    R +  +    V LA  L+  R  + V+ QN DD ALL    +    R S+I G+G++ Q F  TP       LVIL +RLL DKG+ EFVAAA  +RA+    RFALVG  D  NP ++    L +W   G +EWW  R DM  V A+A+IVCLPSYREGLP+ L+EAAAC RP++ATDVPGCREI    + GL VP +DV  LV A+ R+L D  L  +  Q  RA V AEF +  +  QTL LY++L
Sbjct:  104 ARLAGVRVVVNALAGLGFLFVSQRVQARVLRPVVELAFRLLLNRKGSHVIVQNPDDQALLVGRKLVAADRTSLIRGSGVNTQHFAATPQAD-GVPLVILASRLLWDKGITEFVAAARDIRALGISARFALVGVGDPENPASIADSQLQQWHDEGVIEWWGRRDDMPRVMAEAHIVCLPSYREGLPKVLIEAAACARPIVATDVPGCREIVRHEDNGLLVPPKDVAALVRAICRLLADPDLRQTMGQRGRAIVNAEFAIGQVLDQTLQLYQEL 374          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A3M0Z6T1_9GAMM (Glycosyltransferase family 1 protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0Z6T1_9GAMM)

HSP 1 Score: 201 bits (512), Expect = 4.250e-58
Identity = 116/237 (48.95%), Postives = 135/237 (56.96%), Query Frame = 3
Query:  378 VLLALVARRDDAWVLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            VL+    R     V+ QN  D  L RA G+     A +I GAG+DLQ F   P P  +   V+LPAR+L DKGV EFVAAA  +R      RF LVG HD ANP AV  R L  W A G VEWW HR DM  V A A++VCLPSYREG P+ L EAAACGR ++ T VPGCR+  + G TGL VP RD E L  AL  +L D     +   A R   E  F + HI    L LYR L
Sbjct:  116 VLMRGALRHSRQRVIFQNRSDRELFRARGLVRDGEAVLIGGAGVDLQRFRVCPEPQGAPPTVVLPARMLWDKGVGEFVAAAGMLRQRGLRARFVLVGGHDPANPAAVPERQLGAWQATGVVEWWGHREDMPEVLAGAHVVCLPSYREGFPKVLQEAAACGRAVVTTAVPGCRDAVVPGITGLLVPPRDPEALGRALEALLRDEERRRAMGTAGRRLAEERFDVRHIVRAHLDLYRAL 352          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: UPI001BC1A498 (Glycosyltransferase family 4 protein n=1 Tax=Sulfuricella sp. TaxID=2099377 RepID=UPI001BC1A498)

HSP 1 Score: 201 bits (511), Expect = 9.400e-58
Identity = 111/224 (49.55%), Postives = 142/224 (63.39%), Query Frame = 3
Query:  417 VLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            ++ QN DD A L   G+A  A+ S+I G+G+D + F F+  P     +++LPAR+L DKGV EFVAAA  ++A     RF L+G  D  NP A+    L  W A+G VEW   R DM    AQA IVCLPSYREGLP+ALLEAAACGR ++ATDVPGCREI  D   GL VPAR+ E L  AL R++ +        +  R  VE EF+++ I  +TLALYR+L
Sbjct:  151 IILQNPDDRAALLNSGVAKAAQISLIRGSGVDTRHFAFSAEPDHQPPVIVLPARMLGDKGVGEFVAAAQALKARGIAARFLLIGERDPDNPAAIPVAQLEEWHASGIVEWLGRRNDMEQQLAQANIVCLPSYREGLPKALLEAAACGRAIVATDVPGCREIVRDEYNGLLVPARNAEALANALRRLIENPDQRREFGRRGREMVEQEFSVEKITAETLALYREL 374          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A497XP85_9PROT (Glycosyltransferase involved in cell wall biosynthesis n=1 Tax=Sulfurisoma sediminicola TaxID=1381557 RepID=A0A497XP85_9PROT)

HSP 1 Score: 201 bits (511), Expect = 1.100e-57
Identity = 116/225 (51.56%), Postives = 142/225 (63.11%), Query Frame = 3
Query:  417 VLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLP-PRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQL 1088
            ++ QNADD  L    G+A  A   +I G+G+D   +   P P P  + LV+LPARLLRDKGV EFVAAA  +RA     RFALVG  D  NP ++    L  W A G VE W  R DM  V A   +VCLPSYREGLP+ LLEAA+CGR ++ATDVPGCREI  DG++GL VP RD   L  AL  +LGD AL  S  +  R +V AEF  + +A  TLA+YR+L
Sbjct:  157 LILQNADDRELFVRRGLAPAAGIRLIRGSGVDTDRY--APRPEPEGRPLVVLPARLLRDKGVGEFVAAARLLRARGIAARFALVGDVDPENPASIGREQLDAWQAEGVVEIWGCRDDMPEVLAGCALVCLPSYREGLPKVLLEAASCGRAIVATDVPGCREIVADGDSGLLVPPRDAAALAAALATLLGDPALRRSMGERGRQRVLAEFAAEKVAAATLAVYREL 379          
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Match: A0A2E3P0V7_9PROT (Glycosyl transferase family 1 n=3 Tax=Rhodospirillales TaxID=204441 RepID=A0A2E3P0V7_9PROT)

HSP 1 Score: 201 bits (511), Expect = 1.620e-57
Identity = 112/228 (49.12%), Postives = 138/228 (60.53%), Query Frame = 3
Query:  417 VLAQNADDLALLRAHGIANTARASIIAGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHADVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYIVCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDVETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQLSGVP 1100
            +L QN DD + L A GI    R  +I G+G+DL +FP TP PP      +L  RLL+ KGV EFV AA  ++    D+   LVGA D  NP  V    +  W+A G VEW   R D+AAV+A A+I  LPSYREGLP++LLEAAAC RPLIATDVPGCR +  DGE GL VP RD   L +A+ R+  DG L  +   AAR  VEA  + D IA     LY ++ G P
Sbjct:  161 MLVQNEDDQSFLAARGIGRAERTHLIPGSGVDLAQFPVTPEPPAPPVRAVLVGRLLKTKGVEEFVQAAGILKGRGCDIHMILVGAPDPGNPTTVTQDQIGAWVAEGLVEWAGERNDIAAVWAGAHIAVLPSYREGLPKSLLEAAACARPLIATDVPGCRALVRDGENGLLVPPRDPVALADAIERLAADGGLRRTYGAAARRDVEARLSQDRIAAVVQRLYAEVLGDP 388          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14531.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DBS1_9GAMM7.450e-6446.81Glycosyltransferase family 1 protein n=1 Tax=Gamma... [more]
A0A1E2UN28_9GAMM2.330e-6242.02Glycosyl transferase family 1 n=2 Tax=Gammaproteob... [more]
A0A1J5SEN8_9ZZZZ4.500e-6245.80N, N'-diacetylbacillosaminyl-diphospho-undecapreno... [more]
UPI00073209971.270e-6148.55glycosyltransferase family 4 protein n=1 Tax=Thioh... [more]
A0A3M0Y459_9PROT4.280e-6053.10Glycosyltransferase family 1 protein n=1 Tax=Alpha... [more]
A0A849S853_9GAMM2.250e-5946.32Glycosyltransferase family 4 protein n=1 Tax=Methy... [more]
A0A3M0Z6T1_9GAMM4.250e-5848.95Glycosyltransferase family 1 protein (Fragment) n=... [more]
UPI001BC1A4989.400e-5849.55Glycosyltransferase family 4 protein n=1 Tax=Sulfu... [more]
A0A497XP85_9PROT1.100e-5751.56Glycosyltransferase involved in cell wall biosynth... [more]
A0A2E3P0V7_9PROT1.620e-5749.12Glycosyl transferase family 1 n=3 Tax=Rhodospirill... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14531contigP-wetherbeei_contig14531:315..1417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1316936.K678_15676
PFAMsGlyco_trans_1_4,Glyco_trans_4_2,Glyco_trans_4_4,Glycos_transf_1
Model size1103
Max annot lvl204441|Rhodospirillales
Exons1
Evalue7.21e-55
EggNOG OGsCOG0438@1|root,COG0438@2|Bacteria,1N0DG@1224|Proteobacteria,2TU8I@28211|Alphaproteobacteria,2JQNW@204441|Rhodospirillales
DescriptionGlycosyl transferase 4-like
Cds size909
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.0604403-UTR-P-wetherbeei_contig14531:314..5081683186025.0604403-UTR-P-wetherbeei_contig14531:314..508Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14531 315..508 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186025.0693061-CDS-P-wetherbeei_contig14531:508..14171683186025.0693061-CDS-P-wetherbeei_contig14531:508..1417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14531 509..1417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14531.1.1prot_P-wetherbeei_contig14531.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14531 509..1417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14531.1.1

>prot_P-wetherbeei_contig14531.1.1 ID=prot_P-wetherbeei_contig14531.1.1|Name=mRNA_P-wetherbeei_contig14531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=303bp
MARSSTVVGLNRCHARARSGSIAPGVAQADIARRAGLALVAEALSGTARV
HRTRLYLXXXXVLLALVARRDDAWVLAQNADDLALLRAHGIANTARASII
AGAGLDLQEFPFTPLPPRSKALVILPARLLRDKGVYEFVAAAARVRAVHA
DVRFALVGAHDMANPGAVDGRDLARWMAAGTVEWWQHRRDMAAVYAQAYI
VCLPSYREGLPRALLEAAACGRPLIATDVPGCREICIDGETGLRVPARDV
ETLVEALMRMLGDGALAASCAQAARAKVEAEFTLDHIATQTLALYRQLSG
VP*
back to top

mRNA from alignment at P-wetherbeei_contig14531:315..1417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14531.1.1 ID=mRNA_P-wetherbeei_contig14531.1.1|Name=mRNA_P-wetherbeei_contig14531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1103bp|location=Sequence derived from alignment at P-wetherbeei_contig14531:315..1417+ (Phaeothamnion wetherbeei SAG_119_79)
CGACGCCCCTGTCTGTTATTTGTGGTGACTGAAGACTGGTACTTCATGTC CCATCGCCTCGGCCTTGCGCTGCGCGCACGCGCGGCTGGTTGGCGGGTGG TGGTGGCCGCGCGCGAGAGCAATCGCGCGGCGGCGATACGCAATGCTGGC TTGGAATTTATCGCGCTGCCGTTTGAGCGCGCGTTGACCTATCCATGGCG CGATCTTCGACTGTTGTGGGCCTTAACCGGTGTCATGCGCGAGCTCGCTC CGGATCTATTGCACCTGGTGTCGCTCAAGCCGATATTGCTCGGCGGGCTG GCCTTGCGTTGGTCGCCGAAGCCTTGTCCGGCACTGCTCGCGTTCACCGG ACTCGGCTATATCTTTNNNNNNNNNNGGTGCTGCTTGCGCTGGTTGCGCG CCGTGACGATGCCTGGGTGCTGGCGCAGAATGCCGACGATCTTGCGCTGC TACGCGCCCACGGCATCGCGAATACTGCCCGTGCCAGCATCATCGCCGGC GCTGGCCTCGACCTGCAGGAGTTTCCGTTCACACCATTGCCACCGCGCAG CAAGGCCTTGGTGATCCTGCCGGCGCGCCTGTTGCGCGACAAAGGCGTGT ATGAATTTGTCGCGGCGGCGGCGCGTGTGCGTGCAGTGCATGCCGATGTG CGCTTCGCATTGGTCGGCGCGCACGACATGGCCAATCCCGGTGCAGTCGA TGGGCGCGATCTGGCGCGATGGATGGCGGCGGGTACGGTGGAGTGGTGGC AGCATAGACGCGATATGGCTGCGGTGTATGCGCAGGCCTACATCGTCTGT CTGCCGTCCTATCGCGAAGGTCTGCCGCGCGCGCTGTTGGAAGCCGCGGC TTGTGGGCGGCCTCTGATCGCGACCGATGTGCCCGGTTGTCGCGAGATCT GCATCGATGGCGAGACCGGCTTGCGGGTGCCGGCGCGCGACGTCGAGACC TTGGTCGAGGCTTTGATGCGCATGCTGGGTGATGGCGCTTTGGCCGCGAG CTGTGCGCAGGCCGCGCGCGCCAAAGTCGAAGCAGAGTTCACGCTCGATC ACATAGCCACGCAGACTTTGGCCTTGTACCGGCAATTGAGTGGCGTGCCG TGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig14531:315..1417+

>mRNA_P-wetherbeei_contig14531.1.1 ID=mRNA_P-wetherbeei_contig14531.1.1|Name=mRNA_P-wetherbeei_contig14531.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=909bp|location=Sequence derived from alignment at P-wetherbeei_contig14531:315..1417+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGATCTTCGACTGTTGTGGGCCTTAACCGGTGTCATGCGCGAGC
TCGCTCCGGATCTATTGCACCTGGTGTCGCTCAAGCCGATATTGCTCGGC
GGGCTGGCCTTGCGTTGGTCGCCGAAGCCTTGTCCGGCACTGCTCGCGTT
CACCGGACTCGGCTATATCTTTNNNNNNNNNNGGTGCTGCTTGCGCTGGT
TGCGCGCCGTGACGATGCCTGGGTGCTGGCGCAGAATGCCGACGATCTTG
CGCTGCTACGCGCCCACGGCATCGCGAATACTGCCCGTGCCAGCATCATC
GCCGGCGCTGGCCTCGACCTGCAGGAGTTTCCGTTCACACCATTGCCACC
GCGCAGCAAGGCCTTGGTGATCCTGCCGGCGCGCCTGTTGCGCGACAAAG
GCGTGTATGAATTTGTCGCGGCGGCGGCGCGTGTGCGTGCAGTGCATGCC
GATGTGCGCTTCGCATTGGTCGGCGCGCACGACATGGCCAATCCCGGTGC
AGTCGATGGGCGCGATCTGGCGCGATGGATGGCGGCGGGTACGGTGGAGT
GGTGGCAGCATAGACGCGATATGGCTGCGGTGTATGCGCAGGCCTACATC
GTCTGTCTGCCGTCCTATCGCGAAGGTCTGCCGCGCGCGCTGTTGGAAGC
CGCGGCTTGTGGGCGGCCTCTGATCGCGACCGATGTGCCCGGTTGTCGCG
AGATCTGCATCGATGGCGAGACCGGCTTGCGGGTGCCGGCGCGCGACGTC
GAGACCTTGGTCGAGGCTTTGATGCGCATGCTGGGTGATGGCGCTTTGGC
CGCGAGCTGTGCGCAGGCCGCGCGCGCCAAAGTCGAAGCAGAGTTCACGC
TCGATCACATAGCCACGCAGACTTTGGCCTTGTACCGGCAATTGAGTGGC
GTGCCGTGA
back to top