mRNA_P-wetherbeei_contig14526.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14526.1.1
Unique NamemRNA_P-wetherbeei_contig14526.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig14526.1.1 vs. uniprot
Match: A0A835YR73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR73_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.250e-35
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:   97 RAVEESPPRPLQVFETGPMTRAEWARDKEAYKYQYVCLMDHEGNGTWYVRRAPRLWL-KKPPFHTRIIRPNVPGMLHFLLNSGRVEVRLEDREVPTPDGGRRKIKVHRLV 423
            R VEE PPRPLQVFE G  TRAE+ R+K  YKYQ+VCLMD EG G W+ RR P  W   KPPFH RI+RPN  GML+FL+++ +V V   + EV  PDG ++K   H++V
Sbjct:   51 RVVEEVPPRPLQVFEYGARTRAEFKRNKAKYKYQHVCLMDGEGAGVWHTRRTPWFWRGNKPPFHVRIVRPNFVGMLYFLMSNEKVRVDWVEEEVEMPDGTKKKCLKHKIV 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14526.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR73_9STRA3.250e-3556.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14526contigP-wetherbeei_contig14526:58..874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size571
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_005560.1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.722726-UTR-P-wetherbeei_contig14526:57..1841683186024.722726-UTR-P-wetherbeei_contig14526:57..184Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14526 58..184 -
1683186024.7524574-UTR-P-wetherbeei_contig14526:841..8741683186024.7524574-UTR-P-wetherbeei_contig14526:841..874Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig14526 842..874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.733938-CDS-P-wetherbeei_contig14526:184..4961683186024.733938-CDS-P-wetherbeei_contig14526:184..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14526 185..496 -
1683186024.7441726-CDS-P-wetherbeei_contig14526:742..8411683186024.7441726-CDS-P-wetherbeei_contig14526:742..841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14526 743..841 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14526.1.1prot_P-wetherbeei_contig14526.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14526 185..841 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14526.1.1

>prot_P-wetherbeei_contig14526.1.1 ID=prot_P-wetherbeei_contig14526.1.1|Name=mRNA_P-wetherbeei_contig14526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
MNPLLARLNELRTVRHFPNILRAVEESPPRPLQVFETGPMTRAEWARDKE
AYKYQYVCLMDHEGNGTWYVRRAPRLWLKKPPFHTRIIRPNVPGMLHFLL
NSGRVEVRLEDREVPTPDGGRRKIKVHRLVEAGKRK*
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mRNA from alignment at P-wetherbeei_contig14526:58..874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14526.1.1 ID=mRNA_P-wetherbeei_contig14526.1.1|Name=mRNA_P-wetherbeei_contig14526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=817bp|location=Sequence derived from alignment at P-wetherbeei_contig14526:58..874- (Phaeothamnion wetherbeei SAG_119_79)
GCCGCGGCGTCATCGGCTGGAGAGGGCGCCCGCATGAACCCTCTTCTTGC
ACGGCTTAACGAGCTGCGAACTGTGCGACACTTCCCCAACATCCTGCGGG
CTGTCGAAGAGAGCCCACCGCGACCGCTTCAGGTGAGGTGCAATGCCATT
AGCCATTCTTTCCTGTTTTGGGGGAGTTCATCGTCCACAGCTGTCATGTA
GGCAATGCACCCGCCTCTGTACACGTCGTAATTTCGCGAGAAGCATGCTG
CCGCGACTCCCTGCCATCCCCAACTCATCGCCTCTACTTTCGAAAGAAAG
CCTTACACATGTTTCCCTCCATGTGTCAAACCAAGCTTTTACCCGGGCGC
GCTTTTGCAAACCGTTGGTCTCTCCCAGGTTTTCGAGACGGGCCCGATGA
CACGGGCAGAGTGGGCGCGTGACAAGGAAGCCTACAAGTACCAATACGTC
TGCCTGATGGACCACGAGGGCAATGGCACCTGGTACGTCCGGCGGGCGCC
GCGGCTCTGGCTCAAGAAGCCGCCGTTCCACACACGCATCATCCGGCCGA
ACGTTCCGGGAATGCTCCACTTCCTGCTGAACTCCGGCCGCGTTGAAGTC
CGGTTGGAGGACCGGGAGGTTCCGACGCCAGACGGGGGCCGGAGAAAAAT
CAAAGTCCACCGGCTCGTCGAGGCCGGCAAAAGGAAGTAGGAGAAAAGAA
AAAGGAAGGAAAGTAAGGAACGAAGGAAAGAAAGAAAAAATTGAAGTTCC
CCGTTCTGTTGGAGTACTTTGCACGACAAAATGAAACTGACGAAAACGAG
CAAAGCAAAGAGTAACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14526:58..874-

>mRNA_P-wetherbeei_contig14526.1.1 ID=mRNA_P-wetherbeei_contig14526.1.1|Name=mRNA_P-wetherbeei_contig14526.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig14526:58..874- (Phaeothamnion wetherbeei SAG_119_79)
ATGAACCCTCTTCTTGCACGGCTTAACGAGCTGCGAACTGTGCGACACTT
CCCCAACATCCTGCGGGCTGTCGAAGAGAGCCCACCGCGACCGCTTCAGG
TTTTCGAGACGGGCCCGATGACACGGGCAGAGTGGGCGCGTGACAAGGAA
GCCTACAAGTACCAATACGTCTGCCTGATGGACCACGAGGGCAATGGCAC
CTGGTACGTCCGGCGGGCGCCGCGGCTCTGGCTCAAGAAGCCGCCGTTCC
ACACACGCATCATCCGGCCGAACGTTCCGGGAATGCTCCACTTCCTGCTG
AACTCCGGCCGCGTTGAAGTCCGGTTGGAGGACCGGGAGGTTCCGACGCC
AGACGGGGGCCGGAGAAAAATCAAAGTCCACCGGCTCGTCGAGGCCGGCA
AAAGGAAGTAG
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