mRNA_P-wetherbeei_contig1451.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1451.1.3
Unique NamemRNA_P-wetherbeei_contig1451.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1451.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1451contigP-wetherbeei_contig1451:1922..7113 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3188
Hectar predicted targeting categoryother localisation
Exons8
Cds size1626
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1451.1.3prot_P-wetherbeei_contig1451.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1451 3332..6961 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.2232022-UTR-P-wetherbeei_contig1451:1921..33311683186024.2232022-UTR-P-wetherbeei_contig1451:1921..3331Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1451 1922..3331 -
1683186024.308594-UTR-P-wetherbeei_contig1451:6961..71131683186024.308594-UTR-P-wetherbeei_contig1451:6961..7113Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1451 6962..7113 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186024.2318354-CDS-P-wetherbeei_contig1451:3331..34951683186024.2318354-CDS-P-wetherbeei_contig1451:3331..3495Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 3332..3495 -
1683186024.2398896-CDS-P-wetherbeei_contig1451:3800..38771683186024.2398896-CDS-P-wetherbeei_contig1451:3800..3877Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 3801..3877 -
1683186024.2482066-CDS-P-wetherbeei_contig1451:4259..44531683186024.2482066-CDS-P-wetherbeei_contig1451:4259..4453Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 4260..4453 -
1683186024.260514-CDS-P-wetherbeei_contig1451:4725..53891683186024.260514-CDS-P-wetherbeei_contig1451:4725..5389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 4726..5389 -
1683186024.2732112-CDS-P-wetherbeei_contig1451:5657..58021683186024.2732112-CDS-P-wetherbeei_contig1451:5657..5802Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 5658..5802 -
1683186024.2828555-CDS-P-wetherbeei_contig1451:6010..60661683186024.2828555-CDS-P-wetherbeei_contig1451:6010..6066Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 6011..6066 -
1683186024.2908719-CDS-P-wetherbeei_contig1451:6315..64401683186024.2908719-CDS-P-wetherbeei_contig1451:6315..6440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 6316..6440 -
1683186024.299031-CDS-P-wetherbeei_contig1451:6760..69611683186024.299031-CDS-P-wetherbeei_contig1451:6760..6961Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1451 6761..6961 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1451.1.3

>prot_P-wetherbeei_contig1451.1.3 ID=prot_P-wetherbeei_contig1451.1.3|Name=mRNA_P-wetherbeei_contig1451.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=542bp
MSAAWGRMSYVAAQQGQQGHGQGPAMVSTSQQSAQRCLDTVARWSQKSFE
ALSMLQSQQRGYGLDEKGLPDARQPLYSCPVCKIVRLGLERQTHHVDCGL
LVLLKSYSREVQPACETLSGEASSAGRGVSTDGGEGGGGGGSRDYYTGMV
MPAGNGSAAASGTRKEYVSNGRRFGAGSHGTSWSPVAGGGEEYWDKYKYG
GSGSALSGLSTAARDTASVVWDQGSRALRKHSNSEVAGRGSVPMSVAVAA
AAVAEEAARSGGGGTGYRCGERTSTRDGSGGDGGGGGGDEQGSGTAAVVP
KRRARRQRTRSRSNSTGRGKSRSHSRSRSRERSSSHGESKTTRRRGGGGG
GGSGADGHHGGDVSAATDALVQMGSPTGARGGGRTSSAGIGGGLRPEWKA
ATGEERVEFLLEDAVRKAGGGGGNDNEEDKEDSGDSVLLGAPAFDKGGQL
LGFYATVSSDAALDSAGDLDAPDKKYLQERLAAAIGRTNDRNFESPPDDR
LVALAPLSPFGRDPPKVFRRADFEDLRAFKHMALGVALRTA*
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mRNA from alignment at P-wetherbeei_contig1451:1922..7113-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1451.1.3 ID=mRNA_P-wetherbeei_contig1451.1.3|Name=mRNA_P-wetherbeei_contig1451.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=5192bp|location=Sequence derived from alignment at P-wetherbeei_contig1451:1922..7113- (Phaeothamnion wetherbeei SAG_119_79)
GCGACCTGGTGGGGGCCGGGCCCGGGGCGGCGCAGGCGGCGGCGGCGGGC
GGGACAGGATCGTCGTTGCCGGTGCCGCGGCTGCCAGCGCCGCCTGGTTC
GCTGAGCGGGCCGCCGCCGCCGCTGCCGCGGCTGGGGGAGCCCGAGCCGC
TCATGTCGGCGGCGTGGGGCCGGATGTCGTACGTAGCGGCGCAGCAGGGG
CAGCAGGGGCACGGACAGGGGCCGGCGATGGTGTCAACATCGCAGCAAAG
CGCGCAGCGGTGCCTCGATACGGTGGCGCGGTGGTCTCAGAAGAGCTTCG
AGGCGCTGTCCATGCTTCAGTCCCAACAGCGCGGCTACGGCCTCGACGAA
AAGGTGCGCAAGGATGGAGGAGACAGCGGCGGTGTCGACCTAGATGGCGA
CGGTGACGGCAGTGGCTTTGTGGCGGCGGCGAGGGCTGTTGACGGCTGAC
GGTGGCTTTCTCCGTGTCAGTGGCGCTACTGACCGGCCTCGCTACAGCGG
CCTTGGCTGCCCATTGAGTGCGTGCGTCCCTTCTCTTCACTCTTCCTTTC
AACCGTCCTCTTCCTTTCCGTCCTTCTTTCCTACCTCGTGCCGCTGTCTG
CCCGTCTGCCCCGGAATAACACGGTTCGTTTAAACAAAAAACTAACGAAC
AAATCCTCTAAAACCAACATCAGGGCCTGCCGGACGCGCGGCAGCCGTTG
TACTCGTGCCCCGTGTGCAAGATTGTGCGGCTGGGGCTCGAACGGCAGAC
CCACCACGTCGACTGCGGCCTCCTCGTGCTTCTGAAGTCCTACAGCCGGT
CAGTCAGTCCATCATTTACTAAATCAGTCAGTCAGTAATTCAACGGTCAG
TTATTCGGGCGATTGGCCAGGTCGCAATTAAATACGCGCGCGATGGAAAA
AAAAATTCGCAGAAGCCGGAAGCGGTGCGGTTATGTGGAGGGCGCAGCCG
GCTTCCTTTTGCCTCTGCGCCTCTGAAACTCGTTTTCCCATCTGTGCCCA
GCCGAATTGCTGCTTTTTTTGCTGTCTACCCGCTCGCCCGCCCGCAGGGA
GGTCCAGCCGGCCTGCGAGACATTGTCTGGCGAGGCGTCCTCCGCGGGTC
GGGGTGAGATATTCACCGAGGCAGTAACCGCCGAAACCCGTCGTAATGGA
AACAGAATGCGGACATCAACTATCCAGAACCGCTAAAGCTGCAATGGGAG
CCTCTTTTCGTGTCGGCGGTGCGTTGCCGTGTCTTGTGTTAAGTGATGTG
GGCTGATATTGGCAAGCCATCACTTCTCGATTTCGTTTCCTTGGTGTCCA
TTTGCCCGCAGGCGTCTCGACGGACGGCGGCGAGGGCGGCGGCGGTGGTG
GGAGCCGAGACTACTACACGGGGATGGTAATGCCCGCCGGCAATGGGTCG
GCGGCGGCAAGCGGCACGCGCAAAGAGTACGTGTCCAACGGGCGGCGCTT
CGGGGCGTGAGTTTTCTTTTTTCGTTTTGCGTTTCTTCTCTTTCTACTTG
TTTTCTCCAACGTCTGAGTCACATCTGCATGTCTTCGCGGCTTTTTGCTT
CAATCGGTGCCGGATTCATGCGATGTTGAACCGACTGTCTTGTGCTGCTT
TGGCGGGTTTAGGAGAGAAAGCAAGGGAAGCAGAGTGAAGGAGTAGTAAG
CATTTCCTGCAACCGCTTTGCAGACCCCCTCATCATCTTCCCTCCTCCCT
ACTCGCCCTGCCACGCACACACAGCGGCTCCCATGGGACCTCTTGGTCGC
CGGTGGCGGGCGGGGGGGAGGAGTACTGGGACAAATACAAGTACGGCGGC
AGCGGCAGCGCCCTCTCGGGCCTTTCCACCGCGGCTCGTGACACGGCGTC
CGTCGTGTGGGACCAGGGCTCGCGGGCGCTACGCAAGCACAGCAACAGCG
AAGTCGCCGGCCGGGGATCCGTGCCGATGTCAGTGGCAGTTGCGGCAGCG
GCAGTGGCGGAGGAGGCTGCCCGCAGCGGGGGTGGCGGTACCGGCTACCG
GTGCGGCGAGCGCACGAGCACTCGCGACGGTAGCGGTGGCGACGGCGGCG
GCGGCGGCGGGGACGAGCAGGGCTCCGGCACTGCTGCCGTCGTGCCGAAG
CGCCGGGCACGCCGGCAGCGCACCCGCAGTCGCAGCAACAGCACGGGCCG
CGGCAAGAGCCGCAGTCATAGTCGCAGCCGCAGCCGCGAACGCAGCTCCA
GCCATGGCGAGTCCAAGACGACCCGTCGTCGCGGCGGCGGCGGCGGTGGC
GGCAGCGGCGCCGATGGTCACCACGGCGGGGACGTCAGCGCGGCGACAGA
TGCGCTCGTGCAGATGGGCTCTCCGACGGGCGCGCGCGGCGGCGGCCGAA
CGAGCAGCGCCGGGATCGGCGGCGGGTTGCGCCCGGAGGTCAGGAAGCGG
TCATTGGATCGTAATGGTTTCCAGGGTGTCTGCCTCCTTTTTTCGTTACA
GGCTGCCGCTGCCTCTACCCCTATCTCTTCTCTCCTCAAGCAGGCAGTTC
GTGTCGCGCTTCTCAGCAGGAAGGGAGAGGGAGGTCTGCAAAAGCGGCCT
TGACCGTAAATTGGAAAAGAAGGGCTCGCTCTGCAAAACATCTAACCGTC
GCTTTCCTCCATGTGCCGCTCGCTGCCCCAAATCTGAATCTCCTATTCTG
GAACGCGCAGTGGAAGGCGGCAACGGGGGAGGAACGGGTGGAATTCTTGC
TGGAAGACGCCGTGCGCAAGGCGGGCGGCGGCGGCGGCAATGACAATGAG
GAGGACAAGGAGGATAGCGGCGACAGTGTGTTGCTGGGGGCGCCGGCGTT
CGACAAGGGCGGCCAGCTGCTCGGCTTCTACGCAACGGTCTCGTCTGACG
CCGCGTGAGTGCATTCGTTCGTTTATCGCATGTGTCTAATGCCGTCCGGC
AAAGCTTTGTTTTGCCTTCAGGGCGGCGCGGCTCCAGCCGTTTTTCCTGT
GTCCGGCGGCTCTGCGAATCGTTTGCAGATGGCAGCTCGCGTTTCATTAG
CAAAGGTTTGGTTAGCTTCTTGTTGCATTGGCTGGCATGCCTTAGTCTCC
CTGGCATTTCTGGCGCTTCTGACCCATATGAGGGAGAACGGGCACACGCC
GCCTGCCCGCCTTGCAAACTTTCCCCAACCTAGCGCCATCGTCGCCACTA
CATACTTTCCGCTAGGTAGTTGCATCCAATCCTTTTCCCTACTCCCAATA
TTTAATCCTATCATAAAATGTTGACGCGGCTGGCAGGCTGGATTCGGCGG
GGGATCTCGACGCGCCGGACAAGAAGTACCTCCAGGAGCGCCTCGCTGCC
GCCATCGGACGCAGTGAGTTGAAGAGCCGTTCTTTATTGCTTCCGATGCG
CCGTCTTACTAAAAACGGTTGCCCCACCTGCACGCACTTTCACTCGCATC
GTCGTCACTGAGCTTACGGGCGGGCTGTGGATGAGAGTGTGCACGCCCGG
TTTGTTTCCGCCGAAAAGGGGCAAGCTGTTCAGTTTCCTGTCAGTCAGTC
AAATGCAATTGTTCGACCCCTGCTAAATCCCCTGACCCGCGCATTGCGTT
CCTCCGTTCCTCTGTTTATTTCTGGCGCTCACCTGCCTGCTCCGTGCCTG
CGCCGCCTGCCCTGGCAGCCAACGACCGTAACTTCGAGTCACCGCCCGAC
GACCGCCTGGTGGCGCTGGCGCCGCTGTCGCCCTTTGGCCGCGACCCGCC
GAAGGTCTTTCGCCGGGCCGACTTCGAAGACCTCCGCGCCTTCAAGCATA
TGGCGCTCGGCGTCGCCCTGCGCACGGCGTAGGCGGCAGCGGCAACGGCG
ATAACGAGGCGGCAGCGATGGCAGCCGGTGACCGCTGGTTTTCGCTACTG
GCCGAAGGCCCGTGGCGACAACAGGGTAACAAGCGGCGGCTGCGGCGGCG
ACGGCGCGATGGCAGCGGCAGCTGGCTGGGTGACGCACACGTTGCTGTCC
TGGGCTCCGAAAGGAGCTGAAATATATAAGCATGGCGCAGAACGGACCGG
GAAGACGGACCACGGAGAACGTGCAGATTCGAAAGAGGCCCGGAGCGCGG
CGCCGGGCCCGCTGCAGCGTTCTCGCGGCTAATCCTTGAGTGAGTGGAAG
CTTCTGCTTGCGACGCGGCGGCATCTGCCAGTAACATGTGTGTACTCGTA
AGCAATCAACGGCCGCCACGATGCTTGCAGCGGCAGGTGCCCCCGCATCT
TTCGCCGCCGCGGCGATGGTGACTGTCGGTAATCCCAAGTCGTCAAACTA
TGAACGGTAGCAAGCTGCGGCAGAAGAGGAACGATGGGGAGCTGCAAGCT
CAACCAGCGGCGTTGCCGGCGCTCTCCTGCTGGCGGCAGAGATTCATGCC
GCTGCAGCCTGAAAAGGTTGAGCGGTGCCTGCAGGCGCAGTGGTGTCGTC
AGCTGCTGCATTCGTGGCAACGTCATCAGCGGCAAGTGGCGGTGAAGTAA
GCTGCAGCAACGGAGGGAACGGCGGCGGCGGCGGTGGCTGCAGCGGGGCA
ACGGCAGGAACGGGGGCGATTTCAGCTGGAGGAGCAGCGGTGACGGCGGA
GGCAGCAGCAGCGGCAACGGCAGTGATGGTGACAGAGCGCCGCTCAGCGG
CAGCAGGAGCGGCAGCAGGAGTGGCAGCAGGAGCGGCAGCGACGGCAGAA
GCCGCGATCGCTGCAACGGCGGCGGCGGCGGCGGCGCTGCGGCCGAGCTG
ACATGATGCACTTTCGCTCGGCCGCTTTTGCACCGCGGGGAAGACAGGAG
TGGGGAGGCATTCGGCTGCTGCAAGCTGTTCCACGTTGATGGTAGGGGGA
CGGAGCGTGGAGCAAGAGAATTAGTAGCGTGAAATATTGCAACGATTGGG
CCGGCGTGCACGGCAGCACCGCCGTCGCCGTGCCGCGGGCTTCTCCTCAG
GTGCGACAGGCGGTGCCCGTTGCAGTGGCGCATTCGGCGGCGCCGCACGG
GCTTGCTCGTTTCGCAAAGCAGTCCAGCGGCCGCCGCTAGGGGACTGCCG
CACCACACTGCTGTTGACGGGCGGCAGTTCATACATTTGGCAGGCATTGG
CGCCGGCTTTGTGATGCTCGATGACAGCGGCGCGCCGGGGCAGGACGAAG
GAAGAACCTTGTTGCAGTTGCGTGTTATTGACATCCGTCAGTCTAGCGTG
CTCCCTTCTCGCTGCTATTCGCGGATCCCTGGACGCGTGTGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1451:1922..7113-

>mRNA_P-wetherbeei_contig1451.1.3 ID=mRNA_P-wetherbeei_contig1451.1.3|Name=mRNA_P-wetherbeei_contig1451.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1626bp|location=Sequence derived from alignment at P-wetherbeei_contig1451:1922..7113- (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGGCGGCGTGGGGCCGGATGTCGTACGTAGCGGCGCAGCAGGGGCA
GCAGGGGCACGGACAGGGGCCGGCGATGGTGTCAACATCGCAGCAAAGCG
CGCAGCGGTGCCTCGATACGGTGGCGCGGTGGTCTCAGAAGAGCTTCGAG
GCGCTGTCCATGCTTCAGTCCCAACAGCGCGGCTACGGCCTCGACGAAAA
GGGCCTGCCGGACGCGCGGCAGCCGTTGTACTCGTGCCCCGTGTGCAAGA
TTGTGCGGCTGGGGCTCGAACGGCAGACCCACCACGTCGACTGCGGCCTC
CTCGTGCTTCTGAAGTCCTACAGCCGGGAGGTCCAGCCGGCCTGCGAGAC
ATTGTCTGGCGAGGCGTCCTCCGCGGGTCGGGGCGTCTCGACGGACGGCG
GCGAGGGCGGCGGCGGTGGTGGGAGCCGAGACTACTACACGGGGATGGTA
ATGCCCGCCGGCAATGGGTCGGCGGCGGCAAGCGGCACGCGCAAAGAGTA
CGTGTCCAACGGGCGGCGCTTCGGGGCCGGCTCCCATGGGACCTCTTGGT
CGCCGGTGGCGGGCGGGGGGGAGGAGTACTGGGACAAATACAAGTACGGC
GGCAGCGGCAGCGCCCTCTCGGGCCTTTCCACCGCGGCTCGTGACACGGC
GTCCGTCGTGTGGGACCAGGGCTCGCGGGCGCTACGCAAGCACAGCAACA
GCGAAGTCGCCGGCCGGGGATCCGTGCCGATGTCAGTGGCAGTTGCGGCA
GCGGCAGTGGCGGAGGAGGCTGCCCGCAGCGGGGGTGGCGGTACCGGCTA
CCGGTGCGGCGAGCGCACGAGCACTCGCGACGGTAGCGGTGGCGACGGCG
GCGGCGGCGGCGGGGACGAGCAGGGCTCCGGCACTGCTGCCGTCGTGCCG
AAGCGCCGGGCACGCCGGCAGCGCACCCGCAGTCGCAGCAACAGCACGGG
CCGCGGCAAGAGCCGCAGTCATAGTCGCAGCCGCAGCCGCGAACGCAGCT
CCAGCCATGGCGAGTCCAAGACGACCCGTCGTCGCGGCGGCGGCGGCGGT
GGCGGCAGCGGCGCCGATGGTCACCACGGCGGGGACGTCAGCGCGGCGAC
AGATGCGCTCGTGCAGATGGGCTCTCCGACGGGCGCGCGCGGCGGCGGCC
GAACGAGCAGCGCCGGGATCGGCGGCGGGTTGCGCCCGGAGTGGAAGGCG
GCAACGGGGGAGGAACGGGTGGAATTCTTGCTGGAAGACGCCGTGCGCAA
GGCGGGCGGCGGCGGCGGCAATGACAATGAGGAGGACAAGGAGGATAGCG
GCGACAGTGTGTTGCTGGGGGCGCCGGCGTTCGACAAGGGCGGCCAGCTG
CTCGGCTTCTACGCAACGGTCTCGTCTGACGCCGCGCTGGATTCGGCGGG
GGATCTCGACGCGCCGGACAAGAAGTACCTCCAGGAGCGCCTCGCTGCCG
CCATCGGACGCACCAACGACCGTAACTTCGAGTCACCGCCCGACGACCGC
CTGGTGGCGCTGGCGCCGCTGTCGCCCTTTGGCCGCGACCCGCCGAAGGT
CTTTCGCCGGGCCGACTTCGAAGACCTCCGCGCCTTCAAGCATATGGCGC
TCGGCGTCGCCCTGCGCACGGCGTAG
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