mRNA_P-wetherbeei_contig145.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig145.2.1
Unique NamemRNA_P-wetherbeei_contig145.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig145.2.1 vs. uniprot
Match: A0A835YHQ9_9STRA (Npa1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ9_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.780e-18
Identity = 93/265 (35.09%), Postives = 121/265 (45.66%), Query Frame = 1 
Query:    1 RVLCRALPWLDAANDPNQRAVVLAALSACPDVVPAYLASFGTDALAPRANSADCLATYRLLARVLAAAPL--GDVPARAGRAAARMTPMDAFLRVALPPALNKAVLTKGVLIGDGVLQAAVFRVAALALQRCGRLVRALEGSVVPSAGSAAAGVSRLAAAVATGSDLRHALRNRLPEVQTLVSLRARLDPSVTAVAISAAATAAAGGNVEGGSEKNGQGVS------------LYALLLRLLRLYQRWVPEAVAAASYDMLKLLP 753
            R + RA   L A +D   RA+++A L A P ++  +L S    +L PRA    CL  Y LLA VL  APL  GD+   +G AAA      A   + LPPAL K   TKG+L    ++QA+   +   AL R G L+R                  RL+AA    + L   LR +LPEVQT+++LRARLDP     A                                     +Y   L  LRLY R +P AV AA +D+LKLLP
Sbjct:  413 RAVARAALLLPAQSDAAARALLVAVLRATPPLLAPFLESLSAASLEPRATPR-CLRGYALLAEVLRCAPLPRGDL---SGAAAA------ALAALVLPPALGKKEFTKGILSPSPLVQASTLTLLCAALARAGALLR------------------RLSAAADARAALSAQLRAQLPEVQTILALRARLDPFTAPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTYIYGRALAALRLYARHLPAAVDAARFDLLKLLP 649
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BLAST of mRNA_P-wetherbeei_contig145.2.1 vs. uniprot
Match: D7G8A9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 3.940e-13
Identity = 82/254 (32.28%), Postives = 110/254 (43.31%), Query Frame = 1 
Query:    1 RVLCRALPWLDAANDPNQRAVVLAALSACPDVVPAYLASFGTDALAPRANSADCLATYRLLARVLAAAPLGDVPARAGRAAARMTPM---DAFLRVALPPALNKAVLTKGVLIGDGVLQAAVFRVAALALQRCGRLVRALEGSVVPSAGSAAAGVSRLAAAVATGSDLRHALRNRLPEVQTLVSLRARLDPSVTAVAISAAATAAAGGNVEGGSEKNGQGVSLYALLLRLLRLYQRWVPEAVAAASYDMLKLLP 753
            R L   L  L A  D  QR ++L  L ACP ++  YL +F T  L  R      L TY LL+ VL   P+                     A     +P  LNK  LT+GVL G  +LQAA   + A  L R   +  A  GS     G                 D++  LR R+P++QTL+ LR ++      V    A+ A  G +V+       + V L   +L LL  Y R +P +VAAA +D LKLLP
Sbjct:  505 RPLLAGLACLGAHEDLGQRTLLLPTLVACPSLLGPYLRTFNTAMLEARPTYR-LLQTYSLLSTVLRKVPVAGSXXXXXXXXXXXXXXXAGQALFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMAGILDRSSLVAAAAAGSSPSPPGVV---------------DMKRLLRQRMPDLQTLLGLRDKIG-----VGAGDASKAPGGQHVD-------RAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP 730
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BLAST of mRNA_P-wetherbeei_contig145.2.1 vs. uniprot
Match: A0A6H5K182_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.070e-12
Identity = 85/269 (31.60%), Postives = 113/269 (42.01%), Query Frame = 1 
Query:    1 RVLCRALPWLDAANDPNQRAVVL---------------AALSACPDVVPAYLASFGTDALAPRANSADCLATYRLLARVLAAAPL-GDVPARAGRAAARMTPM--DAFLRVALPPALNKAVLTKGVLIGDGVLQAAVFRVAALALQRCGRLVRALEGSVVPSAGSAAAGVSRLAAAVATGSDLRHALRNRLPEVQTLVSLRARLDPSVTAVAISAAATAAAGGNVEGGSEKNGQGVSLYALLLRLLRLYQRWVPEAVAAASYDMLKLLP 753
            R L   L  L A  D  QRA++L               + L ACP ++  YL +F T  L  R      L TY LL+ VL   P+ G  P                A     +P  LNK  LT+GVL G  +LQAA   + A  L R   +V A  GS     G                 +++  LR R+P++QTL+ LR ++              A  G  V GG   + + V L   +L LL  Y R +P +VAAA +D LKLLP
Sbjct:  473 RPLLAGLACLGAHEDLGQRALLLVGRCLLLEASSKWYRSTLVACPSLLGPYLRTFNTAILEARPTYR-LLQTYSLLSAVLRKVPVAGSSPLSEEXXXXXXXXXAGQALFSTVMPAELNKKELTRGVLSGSTLLQAATMNLMASILDRASLVVAAAAGSSPSPPGVV---------------EMKRLLRQRMPDLQTLLGLRDKIGVG-----------AGDGSKVTGGQHVD-RAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLP 713
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig145.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YHQ9_9STRA2.780e-1835.09Npa1 domain-containing protein n=1 Tax=Tribonema m... [more]
D7G8A9_ECTSI3.940e-1332.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K182_9PHAE6.070e-1231.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig145contigP-wetherbeei_contig145:11351..12190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8A9
Preferred nameURB1
PFAMsNopRA1,Npa1
Model size753
Max annot lvl2759|Eukaryota
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
Exons2
Evalue6.46e-14
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota
EC2.5.1.54,3.6.1.52
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cds size753
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186023.8324535-CDS-P-wetherbeei_contig145:11350..118931683186023.8324535-CDS-P-wetherbeei_contig145:11350..11893Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig145 11351..11893 -
1683186023.8450599-CDS-P-wetherbeei_contig145:11980..121901683186023.8450599-CDS-P-wetherbeei_contig145:11980..12190Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig145 11981..12190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig145.2.1prot_P-wetherbeei_contig145.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig145 11351..12190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig145.2.1

>prot_P-wetherbeei_contig145.2.1 ID=prot_P-wetherbeei_contig145.2.1|Name=mRNA_P-wetherbeei_contig145.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=251bp
RVLCRALPWLDAANDPNQRAVVLAALSACPDVVPAYLASFGTDALAPRAN
SADCLATYRLLARVLAAAPLGDVPARAGRAAARMTPMDAFLRVALPPALN
KAVLTKGVLIGDGVLQAAVFRVAALALQRCGRLVRALEGSVVPSAGSAAA
GVSRLAAAVATGSDLRHALRNRLPEVQTLVSLRARLDPSVTAVAISAAAT
AAAGGNVEGGSEKNGQGVSLYALLLRLLRLYQRWVPEAVAAASYDMLKLL
P
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mRNA from alignment at P-wetherbeei_contig145:11351..12190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig145.2.1 ID=mRNA_P-wetherbeei_contig145.2.1|Name=mRNA_P-wetherbeei_contig145.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=840bp|location=Sequence derived from alignment at P-wetherbeei_contig145:11351..12190- (Phaeothamnion wetherbeei SAG_119_79)
CGTGTCCTCTGCCGGGCTTTGCCCTGGCTGGATGCCGCGAATGACCCGAA
CCAGCGCGCCGTTGTGCTGGCAGCGCTTTCTGCCTGCCCGGACGTGGTCC
CAGCGTATCTCGCCAGCTTCGGCACGGACGCTCTCGCCCCGCGCGCCAAC
TCGGCTGACTGCCTGGCCACCTACCGGCTGCTCGCTCGCGTCCTGGCCGC
CGCGCCGCTGGTGGCGCCTCATGCTGTACCGTCGGCGGCAGCGGCGGCAG
TGGCGCAACCAATGACGGATGACATCAGCGCCTCTGACCGAGCAGAGGGC
GACGTTCCCGCGCGGGCAGGGCGGGCCGCAGCGAGAATGACTCCGATGGA
CGCGTTCCTGCGCGTCGCGCTCCCGCCGGCGCTGAACAAGGCGGTGCTGA
CTAAAGGAGTGCTGATTGGGGACGGAGTTTTGCAGGCGGCGGTTTTCCGT
GTGGCGGCGCTGGCCCTACAGCGCTGCGGCCGCCTCGTACGCGCGTTGGA
GGGCAGTGTGGTCCCTTCTGCCGGCAGCGCTGCTGCCGGCGTGTCTAGAC
TGGCCGCTGCCGTTGCAACTGGATCAGATCTTCGGCATGCTCTCCGCAAC
CGACTGCCGGAAGTCCAGACGCTGGTGAGCCTTCGCGCCCGCCTTGACCC
GAGCGTCACGGCCGTGGCCATTTCAGCTGCCGCAACGGCTGCCGCCGGCG
GCAATGTCGAAGGTGGTAGCGAGAAGAACGGCCAAGGCGTATCACTGTAT
GCGCTGCTGCTGCGGCTCCTTCGGCTCTACCAGCGGTGGGTGCCGGAGGC
GGTGGCGGCAGCGAGCTACGACATGCTTAAGCTTCTGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig145:11351..12190-

>mRNA_P-wetherbeei_contig145.2.1 ID=mRNA_P-wetherbeei_contig145.2.1|Name=mRNA_P-wetherbeei_contig145.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=753bp|location=Sequence derived from alignment at P-wetherbeei_contig145:11351..12190- (Phaeothamnion wetherbeei SAG_119_79)
CGTGTCCTCTGCCGGGCTTTGCCCTGGCTGGATGCCGCGAATGACCCGAA
CCAGCGCGCCGTTGTGCTGGCAGCGCTTTCTGCCTGCCCGGACGTGGTCC
CAGCGTATCTCGCCAGCTTCGGCACGGACGCTCTCGCCCCGCGCGCCAAC
TCGGCTGACTGCCTGGCCACCTACCGGCTGCTCGCTCGCGTCCTGGCCGC
CGCGCCGCTGGGCGACGTTCCCGCGCGGGCAGGGCGGGCCGCAGCGAGAA
TGACTCCGATGGACGCGTTCCTGCGCGTCGCGCTCCCGCCGGCGCTGAAC
AAGGCGGTGCTGACTAAAGGAGTGCTGATTGGGGACGGAGTTTTGCAGGC
GGCGGTTTTCCGTGTGGCGGCGCTGGCCCTACAGCGCTGCGGCCGCCTCG
TACGCGCGTTGGAGGGCAGTGTGGTCCCTTCTGCCGGCAGCGCTGCTGCC
GGCGTGTCTAGACTGGCCGCTGCCGTTGCAACTGGATCAGATCTTCGGCA
TGCTCTCCGCAACCGACTGCCGGAAGTCCAGACGCTGGTGAGCCTTCGCG
CCCGCCTTGACCCGAGCGTCACGGCCGTGGCCATTTCAGCTGCCGCAACG
GCTGCCGCCGGCGGCAATGTCGAAGGTGGTAGCGAGAAGAACGGCCAAGG
CGTATCACTGTATGCGCTGCTGCTGCGGCTCCTTCGGCTCTACCAGCGGT
GGGTGCCGGAGGCGGTGGCGGCAGCGAGCTACGACATGCTTAAGCTTCTG
CCG
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