mRNA_P-wetherbeei_contig14395.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig14395.5.1
Unique NamemRNA_P-wetherbeei_contig14395.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.170e-24
Identity = 47/107 (43.93%), Postives = 76/107 (71.03%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLDPAKGR 321
            G+R++Y+ R   LR+ L+AV++F P  ++L++  LS L++ ++  V  ++G+D +  +F+AT+DAGSD++  C  LL   WEWC+ H++NCA VKAFG  +DPAK R
Sbjct:    3 GIRLYYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSTLLQKYLERVLAEYGLDVSL-LFSATSDAGSDVKRLCDVLLPGLWEWCVCHMMNCAVVKAFGMHVDPAKSR 108          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A6H5KEC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEC8_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 7.860e-24
Identity = 45/105 (42.86%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLDPAK 315
            G+R++Y+ R   LR+ L+AV++F P  ++L++  LS L++ ++  V  ++G+D +  +F+AT+DAGSD++  C  LL   WEWC+ H+INCA V+AFG+ ++PAK
Sbjct:  103 GIRLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSL-LFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVNPAK 206          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.590e-23
Identity = 46/105 (43.81%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLDPAK 315
            G+R++Y  R   LR+ L+AV++F P  ++L++  LS L++ ++  V  ++G+D +  +F+AT+DAGSD++  C  LL   WEWC+ H+INCA V+AFG+ +DPAK
Sbjct:  182 GIRLFYADRTWVLRSRLIAVRQFNPTKELLEDNRLSALLQKYLESVLEEYGLDVSL-LFSATSDAGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDPAK 285          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A6H5KWS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.040e-22
Identity = 46/107 (42.99%), Postives = 74/107 (69.16%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLDPAKGR 321
            G+ ++Y+ R   LR+ L+AV++F P  ++L++  LS LV+  +  V  ++G+D +  VF+AT+D+GSD++  C  LL   WEWC+ H+INCA V+AFG+ +D AK R
Sbjct:  256 GIPLFYVDRTWVLRSRLIAVRQFNPTKELLEDNRLSALVQKHLESVLEEYGLDVSL-VFSATSDSGSDVKRLCDVLLPGLWEWCVCHMINCALVEAFGTHVDSAKSR 361          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A2V3ILY8_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILY8_9FLOR)

HSP 1 Score: 94.7 bits (234), Expect = 1.650e-21
Identity = 39/102 (38.24%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLD 306
            G++++Y+SR  +++  LLAV+ F P   +L   +LS++++LW   + ++F +   K + ++T+D GSD++  CS L+   WEWCLPH++NC  V AFG+ L+
Sbjct:  105 GIQLFYVSREWEVKAVLLAVRHFCPSGNLLPGRSLSDILQLWTNKIILEFNVSYDK-ILSSTSDTGSDVKRLCSVLIPESWEWCLPHMLNCVLVGAFGTGLN 205          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.390e-21
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSLDPA 312
            GLR+++ +    L + L+AVK F P   +   + LS+++ +WV  V  +FG+D   H+F   TDAGSD++  C K+L S WEWC PH++NC  V+AFG++   A
Sbjct:  264 GLRLFWCTSTFVLDSALVAVKLFQPSADLTSSKQLSDILLIWVQEVLKEFGLD-TNHLFCTVTDAGSDVKRLCLKVLTSAWEWCFPHMLNCVLVEAFGTNASRA 366          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.840e-16
Identity = 39/106 (36.79%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRC-CCSKLLESFWEWCLPHLINCACVKAFGSSLDPAK 315
            G+R++YI R  +L++ LLAV++F P  ++ + E LS +++ ++  V  +FG+D +  +F+AT+DAGSD++   C  L+   W+ C+ H++NC+ V+A G+ +D  K
Sbjct:   92 GVRLFYIDREWRLKSRLLAVRQFNPTLEMFENERLSAVLEKYLTDVLEEFGLDVSM-LFSATSDAGSDVKHRLCHTLIPRLWKSCVCHMLNCSLVEAIGTRVDSRK 196          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A0P1AIP3_PLAHL (Ribonuclease H-like domain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP3_PLAHL)

HSP 1 Score: 74.7 bits (182), Expect = 1.730e-13
Identity = 34/72 (47.22%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  103 LSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLES-FWEWCLPHLINCACVKAFGSSLDPAK 315
            LSE++  WV+ V  +FG+ P+  +  +T+D G D+R   SKLL + FWEWC+PHL NCA  +++G++LDP+K
Sbjct:  186 LSEVLYSWVIDVLAEFGLLPSD-IAGSTSDGGGDIRRLLSKLLTAAFWEWCVPHLSNCALQESYGANLDPSK 256          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: A0A2V3IPY4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPY4_9FLOR)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-10
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSSL 303
            G+RI        L++  L V+ F     +L+   LS ++ L      M F ++P  +V ++ +D+GS ++   SKLL  +W WC+ HL+NCA V+AFG+S+
Sbjct:  231 GVRIVVTDEQWCLQSKSLTVRHFDTCTTLLESGRLSGVLHLCYNKELMDFEVEP-NNVMSSVSDSGSTVKRLGSKLLPGYWNWCMSHLLNCALVEAFGTSI 330          
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Match: W2QNI4_PHYPN (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=W2QNI4_PHYPN)

HSP 1 Score: 64.3 bits (155), Expect = 9.310e-10
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQE-EALSELVKLWVVHVFMQFGIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFG 294
            GLR+++I    + ++ LL  + +  DP   +  E   E  K W++ +   FG+   K+V+AATTDAG +++   +  L   WEWC+PH  N A   AFG
Sbjct:   71 GLRLYFIDNNWQFQSILLGTRHY--DPMYGERSEGNREPFKRWILELLKDFGLT-IKNVYAATTDAGPNVKWMMATGLNLKWEWCMPHRTNAATKMAFG 166          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig14395.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JNY1_9PHAE1.170e-2443.93Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEC8_9PHAE7.860e-2442.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ82_9PHAE5.590e-2343.81Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KWS6_9PHAE3.040e-2242.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V3ILY8_9FLOR1.650e-2138.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A6H5KVU5_9PHAE4.390e-2141.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI5.840e-1636.79Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A0P1AIP3_PLAHL1.730e-1347.22Ribonuclease H-like domain n=1 Tax=Plasmopara hals... [more]
A0A2V3IPY4_9FLOR1.350e-1034.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
W2QNI4_PHYPN9.310e-1035.35Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig14395contigP-wetherbeei_contig14395:1393..1717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4792.ETI53983
Model size325
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.88e-10
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota,3QH9R@4776|Peronosporales
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186020.3409157-CDS-P-wetherbeei_contig14395:1392..17161683186020.3409157-CDS-P-wetherbeei_contig14395:1392..1716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig14395 1393..1716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig14395.5.1prot_P-wetherbeei_contig14395.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig14395 1393..1716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig14395.5.1

>prot_P-wetherbeei_contig14395.5.1 ID=prot_P-wetherbeei_contig14395.5.1|Name=mRNA_P-wetherbeei_contig14395.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
GLRIWYISRLGKLRTTLLAVKEFMPDPQVLQEEALSELVKLWVVHVFMQF
GIDPAKHVFAATTDAGSDMRCCCSKLLESFWEWCLPHLINCACVKAFGSS
LDPAKGRE
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mRNA from alignment at P-wetherbeei_contig14395:1393..1717+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig14395.5.1 ID=mRNA_P-wetherbeei_contig14395.5.1|Name=mRNA_P-wetherbeei_contig14395.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=325bp|location=Sequence derived from alignment at P-wetherbeei_contig14395:1393..1717+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGCGTATCTGGTACATCTCGCGCTTGGGAAAGCTTCGGACAACTCT GCTTGCGGTTAAGGAGTTTATGCCAGACCCACAAGTTCTACAGGAGGAGG CGTTGTCGGAGCTCGTGAAGCTGTGGGTCGTCCACGTCTTCATGCAGTTT GGCATCGACCCCGCGAAACACGTTTTTGCAGCCACAACAGACGCCGGCTC GGACATGCGCTGCTGCTGCAGCAAGCTGCTCGAGTCGTTCTGGGAGTGGT GCCTCCCCCACCTCATCAACTGCGCGTGCGTCAAGGCCTTCGGGAGCAGC CTCGACCCGGCAAAGGGCCGAGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig14395:1393..1717+

>mRNA_P-wetherbeei_contig14395.5.1 ID=mRNA_P-wetherbeei_contig14395.5.1|Name=mRNA_P-wetherbeei_contig14395.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig14395:1393..1717+ (Phaeothamnion wetherbeei SAG_119_79)
GGGCTGCGTATCTGGTACATCTCGCGCTTGGGAAAGCTTCGGACAACTCT
GCTTGCGGTTAAGGAGTTTATGCCAGACCCACAAGTTCTACAGGAGGAGG
CGTTGTCGGAGCTCGTGAAGCTGTGGGTCGTCCACGTCTTCATGCAGTTT
GGCATCGACCCCGCGAAACACGTTTTTGCAGCCACAACAGACGCCGGCTC
GGACATGCGCTGCTGCTGCAGCAAGCTGCTCGAGTCGTTCTGGGAGTGGT
GCCTCCCCCACCTCATCAACTGCGCGTGCGTCAAGGCCTTCGGGAGCAGC
CTCGACCCGGCAAAGGGCCGAGAG
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